Cow genome map

Conread name: Tra1-TCH01D110036

Conread position: 295-790
Cow position: chr17:38868809-38868325 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 327
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 361, 255

Conread position: 296-644
Cow position: chr17:35885038-35884707 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 19

Conread position: 299-790
Cow position: chr17:1915828-1916311 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 16

Conread position: 301-647
Cow position: chr17:38599316-38598979 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 12

Conread position: 303-548
Cow position: chr17:40682378-40682623 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 310-468
Cow position: chr17:17271142-17270984 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 310-488
Cow position: chr17:1659012-1659190 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 310-549
Cow position: chr17:6369341-6369103 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 103, 0

Conread position: 313-548
Cow position: chr17:24583816-24583587 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 313-549
Cow position: chr17:7837136-7837366 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 195, 0

Conread position: 313-549
Cow position: chr17:17776275-17776039 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 313-549
Cow position: chr17:21618985-21619221 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 313-549
Cow position: chr17:34958280-34958039 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 121, 16

Conread position: 313-549
Cow position: chr17:36655580-36655352 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 105, 0

Conread position: 313-648
Cow position: chr17:19125833-19126150 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 238, 0

Conread position: 313-740
Cow position: chr17:6528431-6528016 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 238

Conread position: 313-785
Cow position: chr17:3353782-3353321 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 313
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 343, 238

Conread position: 313-790
Cow position: chr17:21649531-21649064 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 236

Conread position: 313-790
Cow position: chr17:28815307-28815771 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 237

Conread position: 314-493
Cow position: chr17:10198527-10198706 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 314-543
Cow position: chr17:23804470-23804240 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 0

Conread position: 314-543
Cow position: chr17:24989602-24989374 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 121, 0

Conread position: 314-548
Cow position: chr17:28810030-28810262 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 120, 0

Conread position: 314-549
Cow position: chr17:1193072-1192838 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 169, 0

Conread position: 314-549
Cow position: chr17:5774295-5774527 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 314-549
Cow position: chr17:23459857-23460092 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 314-549
Cow position: chr17:23829867-23829632 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 314-549
Cow position: chr17:36071414-36071649 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 314-549
Cow position: chr17:37352706-37352937 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 39, 117

Conread position: 314-644
Cow position: chr17:13267297-13266989 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 314-646
Cow position: chr17:3967223-3966894 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 20

Conread position: 314-647
Cow position: chr17:1034250-1033919 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 99

Conread position: 314-690
Cow position: chr17:27786359-27785998 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 233

Conread position: 314-784
Cow position: chr17:21568307-21567822 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 16

Conread position: 314-790
Cow position: chr17:12960070-12959606 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 237

Conread position: 314-790
Cow position: chr17:24860732-24861187 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 322
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 122

Conread position: 314-790
Cow position: chr17:40870671-40870222 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 321
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 36, 43

Conread position: 315-693
Cow position: chr17:2466596-2466958 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 337, 186

Conread position: 317-491
Cow position: chr17:4874103-4874277 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 317-549
Cow position: chr17:590001-590229 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 317-553
Cow position: chr17:13633645-13633879 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 117, 0

Conread position: 318-648
Cow position: chr17:18462118-18462433 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 229
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 130, 78

Conread position: 321-556
Cow position: chr17:25148574-25148810 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 229, 0

Conread position: 352-540
Cow position: chr17:4555408-4555220 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 66

Conread position: 352-734
Cow position: chr17:6102781-6102403 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 199

Conread position: 356-790
Cow position: chr17:21383212-21383633 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 294
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 298, 10

Conread position: 387-648
Cow position: chr17:8299160-8298908 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 202, 129

Show alignments to all cow chromosomes.