Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 299-549 |
| Cow position: | chr18:464442-464676 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 301-549 |
| Cow position: | chr18:22257212-22256961 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 308-683 |
| Cow position: | chr18:29268587-29268220 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 35 |
| Conread position: | 311-466 |
| Cow position: | chr18:43134729-43134574 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-790 |
| Cow position: | chr18:14247045-14246584 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 343, 187 |
| Conread position: | 312-561 |
| Cow position: | chr18:1176624-1176378 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 238, 10 |
| Conread position: | 313-549 |
| Cow position: | chr18:17321143-17321379 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 313-790 |
| Cow position: | chr18:24230701-24230238 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 348, 25 |
| Conread position: | 313-790 |
| Cow position: | chr18:39683277-39683743 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 314-547 |
| Cow position: | chr18:17311292-17311067 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 314-549 |
| Cow position: | chr18:6808590-6808354 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 97, 102 |
| Conread position: | 314-549 |
| Cow position: | chr18:18470688-18470456 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 314-549 |
| Cow position: | chr18:40060447-40060682 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr18:51022572-51022807 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr18:54127700-54127469 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 314-553 |
| Cow position: | chr18:30693394-30693155 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-556 |
| Cow position: | chr18:13727566-13727805 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 236, 108 |
| Conread position: | 314-556 |
| Cow position: | chr18:37709587-37709342 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 99, 224 |
| Conread position: | 314-647 |
| Cow position: | chr18:38348534-38348847 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 314-648 |
| Cow position: | chr18:6087607-6087923 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 314-694 |
| Cow position: | chr18:56481002-56481369 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 84 |
| Conread position: | 314-734 |
| Cow position: | chr18:21715949-21716353 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 346, 16 |
| Conread position: | 314-790 |
| Cow position: | chr18:17339656-17339192 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 43 |
| Conread position: | 314-790 |
| Cow position: | chr18:20220587-20220125 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 181, 65 |
| Conread position: | 314-790 |
| Cow position: | chr18:30973543-30974008 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 237 |
| Conread position: | 314-790 |
| Cow position: | chr18:32793676-32793212 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 203 |
| Conread position: | 314-790 |
| Cow position: | chr18:40702897-40703356 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 187, 170 |
| Conread position: | 317-547 |
| Cow position: | chr18:33972270-33972505 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 317-549 |
| Cow position: | chr18:8912452-8912220 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-549 |
| Cow position: | chr18:43488236-43488004 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-734 |
| Cow position: | chr18:24145644-24146060 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 256, 116 |
| Conread position: | 317-790 |
| Cow position: | chr18:39936002-39936465 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 234 |
| Conread position: | 319-549 |
| Cow position: | chr18:44005638-44005408 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-790 |
| Cow position: | chr18:42834546-42834090 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 149 |
| Conread position: | 322-504 |
| Cow position: | chr18:1517949-1518127 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 324-790 |
| Cow position: | chr18:17319706-17319250 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 91, 228 |
| Conread position: | 324-790 |
| Cow position: | chr18:53534096-53534544 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 265, 93 |
| Conread position: | 335-790 |
| Cow position: | chr18:42160951-42160495 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 216 |
| Conread position: | 340-553 |
| Cow position: | chr18:43797594-43797804 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 340-790 |
| Cow position: | chr18:54120814-54120370 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 211 |
| Conread position: | 352-708 |
| Cow position: | chr18:22168247-22168610 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 357-561 |
| Cow position: | chr18:11919654-11919452 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 193, 107 |
| Conread position: | 372-650 |
| Cow position: | chr18:13702761-13702497 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 390-549 |
| Cow position: | chr18:1974755-1974601 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.