Cow genome map

Conread name: Tra1-TCH01D110036

Conread position: 264-549
Cow position: chr19:34066385-34066100 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 67

Conread position: 297-554
Cow position: chr19:35641281-35641025 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 301-549
Cow position: chr19:3930392-3930154 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 301-553
Cow position: chr19:42246038-42246287 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 12, 0

Conread position: 304-561
Cow position: chr19:50550541-50550285 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 96, 18

Conread position: 304-790
Cow position: chr19:28945064-28944597 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 143

Conread position: 305-549
Cow position: chr19:33257671-33257915 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 307-648
Cow position: chr19:35616568-35616250 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 182, 0

Conread position: 308-549
Cow position: chr19:14480140-14480379 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 308-647
Cow position: chr19:47874789-47874468 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 0

Conread position: 308-790
Cow position: chr19:28608917-28608448 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 175

Conread position: 308-790
Cow position: chr19:38055186-38055656 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 156

Conread position: 310-549
Cow position: chr19:13227500-13227739 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 310-790
Cow position: chr19:28469164-28469632 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 45

Conread position: 310-790
Cow position: chr19:30242594-30242126 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 321
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 23, 90

Conread position: 311-521
Cow position: chr19:37277176-37276968 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 87, 0

Conread position: 313-548
Cow position: chr19:28446655-28446423 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 108, 0

Conread position: 313-549
Cow position: chr19:19008243-19008005 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 89

Conread position: 313-549
Cow position: chr19:50658042-50657808 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 313-644
Cow position: chr19:6476713-6477013 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 158, 0

Conread position: 313-790
Cow position: chr19:30251595-30251131 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 317
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 40, 86

Conread position: 313-790
Cow position: chr19:45585386-45585845 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 233

Conread position: 314-443
Cow position: chr19:7647784-7647913 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 314-549
Cow position: chr19:6471771-6472007 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 105, 225

Conread position: 314-549
Cow position: chr19:8550961-8551196 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 314-549
Cow position: chr19:14380377-14380142 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 314-549
Cow position: chr19:27823674-27823908 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 314-644
Cow position: chr19:7715128-7714792 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 105, 161

Conread position: 314-648
Cow position: chr19:2939378-2939681 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 84, 0

Conread position: 314-648
Cow position: chr19:39753585-39753270 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 314-694
Cow position: chr19:21125652-21125281 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 108

Conread position: 314-730
Cow position: chr19:52332425-52332838 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 122

Conread position: 314-743
Cow position: chr19:27828292-27828708 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 291
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 325, 69

Conread position: 314-790
Cow position: chr19:7700349-7700817 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 16

Conread position: 314-790
Cow position: chr19:11111761-11112215 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 236

Conread position: 314-790
Cow position: chr19:11209675-11210141 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 26

Conread position: 314-790
Cow position: chr19:28436889-28437353 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 122

Conread position: 314-790
Cow position: chr19:43435185-43434722 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 76

Conread position: 314-790
Cow position: chr19:43751084-43750625 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 325
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 233

Conread position: 314-790
Cow position: chr19:50677448-50677912 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 110

Conread position: 316-548
Cow position: chr19:53640314-53640088 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 0

Conread position: 317-493
Cow position: chr19:30263425-30263601 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 83, 21

Conread position: 317-547
Cow position: chr19:11241578-11241348 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 317-549
Cow position: chr19:6486067-6485846 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 30, 21

Conread position: 317-556
Cow position: chr19:42155897-42155657 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 231, 0

Conread position: 342-790
Cow position: chr19:53533806-53533365 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 293
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 207, 87

Conread position: 344-648
Cow position: chr19:2011768-2011472 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 141, 123

Conread position: 348-646
Cow position: chr19:8824202-8823907 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 211, 104

Conread position: 352-549
Cow position: chr19:33082158-33082355 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 352-647
Cow position: chr19:24985879-24986169 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 352-788
Cow position: chr19:11978680-11979106 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 198

Conread position: 355-549
Cow position: chr19:12053751-12053557 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 355-549
Cow position: chr19:12066841-12067035 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 565-790
Cow position: chr19:3930157-3929925 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 29

Show alignments to all cow chromosomes.