Cow genome map


           Conread name:
           Tra1-TCH01D110036
        

               Conread position:
               204-549
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 24
               

               Conread position:
               279-548
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               19, 37
               

               Conread position:
               291-789
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               333
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               23, 109
               

               Conread position:
               301-556
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               8, 201
               

               Conread position:
               305-491
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               307-790
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 245
               

               Conread position:
               308-556
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               243, 82
               

               Conread position:
               309-790
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 89
               

               Conread position:
               310-470
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               310-549
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               310-743
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               346, 241
               

               Conread position:
               311-548
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               313-521
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               313-527
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               176, 0
               

               Conread position:
               313-549
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               69, 144
               

               Conread position:
               313-549
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               200, 59
               

               Conread position:
               313-549
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               313-556
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               43, 36
               

               Conread position:
               313-650
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               148, 243
               

               Conread position:
               313-790
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 107
               

               Conread position:
               313-790
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 238
               

               Conread position:
               313-790
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 238
               

               Conread position:
               313-790
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               321
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               341, 188
               

               Conread position:
               314-525
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               96, 104
               

               Conread position:
               314-525
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               314-547
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               42, 36
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               18, 37
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               18, 82
               

               Conread position:
               314-551
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               314-561
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               236, 84
               

               Conread position:
               314-644
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               146, 49
               

               Conread position:
               314-644
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               237
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               21, 238
               

               Conread position:
               314-692
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               265
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               275, 84
               

               Conread position:
               314-743
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               291
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               329, 161
               

               Conread position:
               314-743
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 240
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 237
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 237
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               320
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               340, 125
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 239
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               313
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               138, 238
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               340, 237
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               324
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               338, 167
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               322
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               334, 237
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 110
               

               Conread position:
               315-693
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               337, 186
               

               Conread position:
               316-790
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               330
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               126, 21
               

               Conread position:
               317-548
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               216, 212
               

               Conread position:
               317-549
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               317-633
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 89
               

               Conread position:
               317-743
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 251
               

               Conread position:
               317-790
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 42
               

               Conread position:
               317-790
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 46
               

               Conread position:
               318-549
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               319-549
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               320-789
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 102
               

               Conread position:
               321-549
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               322-646
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               267, 57
               

               Conread position:
               322-648
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               322-790
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 186
               

               Conread position:
               323-648
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               200, 16
               

               Conread position:
               323-790
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               291
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               227, 246
               

               Conread position:
               325-547
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               334-790
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               316
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               340-790
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               314, 211
               

               Conread position:
               355-538
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               355-656
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               288, 158
               

               Conread position:
               387-549
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               434-556
               

               Cow position:
               
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               451-675
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               117, 20
               

               Conread position:
               466-647
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               123, 42
               
Show alignments to all cow chromosomes.