Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 204-549 |
| Cow position: | chr2:82290225-82290567 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 279-548 |
| Cow position: | chr2:80565568-80565830 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 291-789 |
| Cow position: | chr2:68157424-68156938 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 301-556 |
| Cow position: | chr2:36586516-36586772 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 201 |
| Conread position: | 305-491 |
| Cow position: | chr2:5513567-5513385 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 307-790 |
| Cow position: | chr2:25245009-25245482 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 245 |
| Conread position: | 308-556 |
| Cow position: | chr2:74691234-74691480 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 243, 82 |
| Conread position: | 309-790 |
| Cow position: | chr2:76038884-76039349 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 89 |
| Conread position: | 310-470 |
| Cow position: | chr2:31893933-31894093 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-549 |
| Cow position: | chr2:46767022-46766783 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-743 |
| Cow position: | chr2:16807987-16808409 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 241 |
| Conread position: | 311-548 |
| Cow position: | chr2:41630361-41630124 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-521 |
| Cow position: | chr2:74690830-74691038 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-527 |
| Cow position: | chr2:37756277-37756490 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 313-549 |
| Cow position: | chr2:3484336-3484572 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 69, 144 |
| Conread position: | 313-549 |
| Cow position: | chr2:56316779-56317014 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 200, 59 |
| Conread position: | 313-549 |
| Cow position: | chr2:64659740-64659504 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-556 |
| Cow position: | chr2:44415606-44415843 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 313-650 |
| Cow position: | chr2:26527447-26527124 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 148, 243 |
| Conread position: | 313-790 |
| Cow position: | chr2:21635895-21636391 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 107 |
| Conread position: | 313-790 |
| Cow position: | chr2:21890407-21890875 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 238 |
| Conread position: | 313-790 |
| Cow position: | chr2:46774816-46775282 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 238 |
| Conread position: | 313-790 |
| Cow position: | chr2:52373419-52373884 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 321 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 341, 188 |
| Conread position: | 314-525 |
| Cow position: | chr2:40413205-40413416 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 104 |
| Conread position: | 314-525 |
| Cow position: | chr2:57984246-57984454 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 314-547 |
| Cow position: | chr2:44506826-44507059 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 314-549 |
| Cow position: | chr2:16797997-16798232 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr2:30930634-30930398 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 314-549 |
| Cow position: | chr2:36857479-36857712 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 314-549 |
| Cow position: | chr2:37171033-37170798 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr2:39753143-39753378 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr2:45558219-45557992 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 314-551 |
| Cow position: | chr2:80585960-80585725 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 314-561 |
| Cow position: | chr2:66060354-66060109 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 236, 84 |
| Conread position: | 314-644 |
| Cow position: | chr2:11882154-11881844 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 146, 49 |
| Conread position: | 314-644 |
| Cow position: | chr2:46774497-46774184 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 21, 238 |
| Conread position: | 314-692 |
| Cow position: | chr2:63086801-63087160 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 265 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 275, 84 |
| Conread position: | 314-743 |
| Cow position: | chr2:48511901-48512314 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 291 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 329, 161 |
| Conread position: | 314-743 |
| Cow position: | chr2:52328703-52329124 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 240 |
| Conread position: | 314-790 |
| Cow position: | chr2:7295273-7294808 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 237 |
| Conread position: | 314-790 |
| Cow position: | chr2:47840166-47839704 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 237 |
| Conread position: | 314-790 |
| Cow position: | chr2:55826005-55825541 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 340, 125 |
| Conread position: | 314-790 |
| Cow position: | chr2:58852948-58853415 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 239 |
| Conread position: | 314-790 |
| Cow position: | chr2:65682713-65683184 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 313 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 138, 238 |
| Conread position: | 314-790 |
| Cow position: | chr2:66701506-66701040 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 237 |
| Conread position: | 314-790 |
| Cow position: | chr2:70651826-70651371 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 338, 167 |
| Conread position: | 314-790 |
| Cow position: | chr2:77921502-77921969 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 334, 237 |
| Conread position: | 314-790 |
| Cow position: | chr2:86168865-86169328 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 110 |
| Conread position: | 315-693 |
| Cow position: | chr2:596526-596888 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 337, 186 |
| Conread position: | 316-790 |
| Cow position: | chr2:58697340-58697810 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 330 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 126, 21 |
| Conread position: | 317-548 |
| Cow position: | chr2:47571897-47571666 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 216, 212 |
| Conread position: | 317-549 |
| Cow position: | chr2:61219845-61219617 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 317-633 |
| Cow position: | chr2:85328372-85328678 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 89 |
| Conread position: | 317-743 |
| Cow position: | chr2:1633228-1632806 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 251 |
| Conread position: | 317-790 |
| Cow position: | chr2:7547216-7546756 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 42 |
| Conread position: | 317-790 |
| Cow position: | chr2:18160190-18160651 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 46 |
| Conread position: | 318-549 |
| Cow position: | chr2:80147534-80147765 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-549 |
| Cow position: | chr2:46025938-46026165 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 320-789 |
| Cow position: | chr2:75069256-75068772 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 102 |
| Conread position: | 321-549 |
| Cow position: | chr2:58342692-58342920 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-646 |
| Cow position: | chr2:28587368-28587677 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 267, 57 |
| Conread position: | 322-648 |
| Cow position: | chr2:9019773-9020078 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 322-790 |
| Cow position: | chr2:32227380-32227836 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 186 |
| Conread position: | 323-648 |
| Cow position: | chr2:62460925-62461246 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 200, 16 |
| Conread position: | 323-790 |
| Cow position: | chr2:74229874-74230340 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 291 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 227, 246 |
| Conread position: | 325-547 |
| Cow position: | chr2:11252134-11252353 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 334-790 |
| Cow position: | chr2:35400489-35400023 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 340-790 |
| Cow position: | chr2:55287174-55287612 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 314, 211 |
| Conread position: | 355-538 |
| Cow position: | chr2:36621921-36621743 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 355-656 |
| Cow position: | chr2:68958601-68958882 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 288, 158 |
| Conread position: | 387-549 |
| Cow position: | chr2:19148463-19148625 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 434-556 |
| Cow position: | chr2:57979686-57979563 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 451-675 |
| Cow position: | chr2:24812803-24812580 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 466-647 |
| Cow position: | chr2:30688478-30688298 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 123, 42 |
Show alignments to all cow chromosomes.