Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 299-656 |
| Cow position: | chr25:7221481-7221150 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 305-549 |
| Cow position: | chr25:14532500-14532256 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 305-787 |
| Cow position: | chr25:34038632-34039099 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 353, 10 |
| Conread position: | 307-469 |
| Cow position: | chr25:3739115-3738954 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 112, 32 |
| Conread position: | 309-790 |
| Cow position: | chr25:6276231-6275761 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 242 |
| Conread position: | 311-788 |
| Cow position: | chr25:17372977-17373458 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 199 |
| Conread position: | 313-544 |
| Cow position: | chr25:4617029-4617259 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 313-548 |
| Cow position: | chr25:6918660-6918422 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 313-549 |
| Cow position: | chr25:23600170-23600406 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-556 |
| Cow position: | chr25:8623946-8624195 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 313-556 |
| Cow position: | chr25:10152645-10152399 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 313-556 |
| Cow position: | chr25:13714304-13714061 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 78, 73 |
| Conread position: | 313-672 |
| Cow position: | chr25:14532909-14532566 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 134 |
| Conread position: | 313-731 |
| Cow position: | chr25:12664565-12664161 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 313-790 |
| Cow position: | chr25:3630769-3631234 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 66 |
| Conread position: | 313-790 |
| Cow position: | chr25:4624842-4625309 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 236 |
| Conread position: | 313-790 |
| Cow position: | chr25:6879644-6879177 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 239 |
| Conread position: | 314-461 |
| Cow position: | chr25:34764294-34764441 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-505 |
| Cow position: | chr25:5202296-5202486 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 314-548 |
| Cow position: | chr25:12244060-12244294 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-548 |
| Cow position: | chr25:22814162-22814394 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 314-549 |
| Cow position: | chr25:6808306-6808541 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr25:12250166-12250401 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr25:20051626-20051391 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr25:20259266-20259035 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 314-549 |
| Cow position: | chr25:30473883-30473648 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr25:34686058-34686285 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 217, 173 |
| Conread position: | 314-648 |
| Cow position: | chr25:7771344-7771028 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 122 |
| Conread position: | 314-687 |
| Cow position: | chr25:13675034-13674677 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 179 |
| Conread position: | 314-790 |
| Cow position: | chr25:11650730-11651195 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 237 |
| Conread position: | 314-790 |
| Cow position: | chr25:18307995-18307512 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 314-790 |
| Cow position: | chr25:36156962-36156497 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 237 |
| Conread position: | 314-790 |
| Cow position: | chr25:41131492-41131027 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 237 |
| Conread position: | 317-549 |
| Cow position: | chr25:21133328-21133099 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 317-549 |
| Cow position: | chr25:21141289-21141058 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 317-549 |
| Cow position: | chr25:32677041-32677273 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-790 |
| Cow position: | chr25:29251740-29251273 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 239 |
| Conread position: | 318-552 |
| Cow position: | chr25:21519070-21518836 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-790 |
| Cow position: | chr25:18443383-18443843 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 138 |
| Conread position: | 319-549 |
| Cow position: | chr25:41238329-41238104 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 186, 42 |
| Conread position: | 319-690 |
| Cow position: | chr25:10726649-10727015 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 92 |
| Conread position: | 319-790 |
| Cow position: | chr25:31979492-31979952 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 328 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 313, 143 |
| Conread position: | 319-790 |
| Cow position: | chr25:32751393-32751849 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 339, 36 |
| Conread position: | 322-556 |
| Cow position: | chr25:10339266-10339499 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 117, 185 |
| Conread position: | 332-549 |
| Cow position: | chr25:11266317-11266098 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 341-790 |
| Cow position: | chr25:7509062-7509496 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 313, 70 |
| Conread position: | 355-767 |
| Cow position: | chr25:5776796-5777201 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 200, 27 |
| Conread position: | 366-639 |
| Cow position: | chr25:7489751-7489488 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 413-540 |
| Cow position: | chr25:16134870-16134997 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-790 |
| Cow position: | chr25:5202504-5202797 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 67, 212 |
| Conread position: | 515-694 |
| Cow position: | chr25:37620048-37619868 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 137 |
Show alignments to all cow chromosomes.