Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 282-549 |
| Cow position: | chr3:11713459-11713191 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 295-542 |
| Cow position: | chr3:29708136-29708384 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 299-641 |
| Cow position: | chr3:8008955-8008616 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 16 |
| Conread position: | 299-790 |
| Cow position: | chr3:56969048-56969519 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 12 |
| Conread position: | 300-789 |
| Cow position: | chr3:5452517-5452039 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 209 |
| Conread position: | 303-549 |
| Cow position: | chr3:3250645-3250398 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 178, 173 |
| Conread position: | 305-549 |
| Cow position: | chr3:27866337-27866092 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 307-549 |
| Cow position: | chr3:52683559-52683317 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-474 |
| Cow position: | chr3:10228984-10229148 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-521 |
| Cow position: | chr3:30766365-30766574 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 310-549 |
| Cow position: | chr3:45835328-45835089 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-558 |
| Cow position: | chr3:45840555-45840308 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 129 |
| Conread position: | 310-790 |
| Cow position: | chr3:25086464-25086001 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 342, 144 |
| Conread position: | 311-468 |
| Cow position: | chr3:19201184-19201345 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 311-790 |
| Cow position: | chr3:10132122-10131649 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 27 |
| Conread position: | 312-548 |
| Cow position: | chr3:25718693-25718460 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 313-494 |
| Cow position: | chr3:78209508-78209689 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-524 |
| Cow position: | chr3:24769390-24769182 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 313-549 |
| Cow position: | chr3:26611917-26611685 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 212, 155 |
| Conread position: | 313-549 |
| Cow position: | chr3:51795883-51796121 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 313-549 |
| Cow position: | chr3:64509646-64509410 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr3:78502033-78501797 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-644 |
| Cow position: | chr3:6047120-6046804 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 40, 241 |
| Conread position: | 313-690 |
| Cow position: | chr3:7866251-7865889 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 313-790 |
| Cow position: | chr3:1466298-1465833 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 42 |
| Conread position: | 313-790 |
| Cow position: | chr3:5451564-5451105 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 98 |
| Conread position: | 313-790 |
| Cow position: | chr3:8810286-8809823 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 77 |
| Conread position: | 313-790 |
| Cow position: | chr3:42333100-42333555 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 330, 53 |
| Conread position: | 313-790 |
| Cow position: | chr3:55263950-55263489 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 314-461 |
| Cow position: | chr3:2470341-2470197 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 314-533 |
| Cow position: | chr3:13009271-13009488 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 314-537 |
| Cow position: | chr3:23831014-23830796 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 16, 107 |
| Conread position: | 314-547 |
| Cow position: | chr3:11243956-11243723 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-548 |
| Cow position: | chr3:28466463-28466698 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:2469852-2470087 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:19115436-19115667 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:22885273-22885506 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 180, 25 |
| Conread position: | 314-549 |
| Cow position: | chr3:24812523-24812289 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:30994073-30993841 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:34170749-34170523 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:35249030-35249267 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 314-549 |
| Cow position: | chr3:53803112-53802885 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:62737581-62737346 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:69037236-69037001 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr3:76509539-76509774 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-553 |
| Cow position: | chr3:32682528-32682764 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 314-553 |
| Cow position: | chr3:51094439-51094672 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 314-556 |
| Cow position: | chr3:60091259-60091016 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 314-556 |
| Cow position: | chr3:84917759-84917522 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 314-644 |
| Cow position: | chr3:71012549-71012238 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 314-788 |
| Cow position: | chr3:2409880-2409418 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 318 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 314-790 |
| Cow position: | chr3:7020389-7020853 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 169 |
| Conread position: | 314-790 |
| Cow position: | chr3:7530718-7530252 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 238 |
| Conread position: | 314-790 |
| Cow position: | chr3:14728797-14729260 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 181 |
| Conread position: | 314-790 |
| Cow position: | chr3:15057169-15056703 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 314-790 |
| Cow position: | chr3:19206636-19206179 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 314-790 |
| Cow position: | chr3:45935324-45935788 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 175, 122 |
| Conread position: | 314-790 |
| Cow position: | chr3:52711128-52711592 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 222 |
| Conread position: | 316-549 |
| Cow position: | chr3:78788756-78788989 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-545 |
| Cow position: | chr3:57722885-57722664 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 317-553 |
| Cow position: | chr3:81350292-81350056 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-558 |
| Cow position: | chr3:19474862-19474621 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 233, 70 |
| Conread position: | 317-624 |
| Cow position: | chr3:22665281-22665591 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 317-642 |
| Cow position: | chr3:60064437-60064752 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 241, 13 |
| Conread position: | 317-683 |
| Cow position: | chr3:34562624-34562270 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 271, 98 |
| Conread position: | 317-743 |
| Cow position: | chr3:64111673-64111262 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 202 |
| Conread position: | 317-786 |
| Cow position: | chr3:80440799-80441256 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 234 |
| Conread position: | 317-790 |
| Cow position: | chr3:75163895-75163440 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 335, 103 |
| Conread position: | 319-549 |
| Cow position: | chr3:7864087-7864317 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-585 |
| Cow position: | chr3:61963827-61963570 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 321-549 |
| Cow position: | chr3:6462560-6462799 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 322-556 |
| Cow position: | chr3:26607259-26607494 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 322-740 |
| Cow position: | chr3:13613396-13613809 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 322-790 |
| Cow position: | chr3:38529542-38529996 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 229 |
| Conread position: | 326-549 |
| Cow position: | chr3:7829533-7829321 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 330-544 |
| Cow position: | chr3:62423879-62423679 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 335-549 |
| Cow position: | chr3:38280424-38280638 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 337-548 |
| Cow position: | chr3:83331252-83331462 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 338-787 |
| Cow position: | chr3:2445803-2446243 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 312, 213 |
| Conread position: | 352-556 |
| Cow position: | chr3:81827504-81827707 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 106 |
| Conread position: | 399-542 |
| Cow position: | chr3:74477168-74477025 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-790 |
| Cow position: | chr3:2481884-2482257 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 144 |
| Conread position: | 415-648 |
| Cow position: | chr3:49874158-49873924 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 31 |
Show alignments to all cow chromosomes.