Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 295-541 |
| Cow position: | chr4:36162364-36162117 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 297-548 |
| Cow position: | chr4:52121128-52120879 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 299-786 |
| Cow position: | chr4:4717563-4717091 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 320 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 304-549 |
| Cow position: | chr4:10906875-10907119 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 307-690 |
| Cow position: | chr4:55322871-55322503 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 341, 242 |
| Conread position: | 310-492 |
| Cow position: | chr4:32189417-32189235 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-790 |
| Cow position: | chr4:12564154-12563685 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 179 |
| Conread position: | 312-548 |
| Cow position: | chr4:45059033-45059271 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 312-549 |
| Cow position: | chr4:48842555-48842318 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr4:10382679-10382915 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr4:16738151-16738387 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr4:34268230-34267994 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr4:43402515-43402279 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-648 |
| Cow position: | chr4:32711493-32711836 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 313-705 |
| Cow position: | chr4:65584070-65583694 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 204 |
| Conread position: | 313-790 |
| Cow position: | chr4:8195252-8195724 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 330 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 313-790 |
| Cow position: | chr4:14529281-14528815 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 313-790 |
| Cow position: | chr4:18953594-18954060 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 237 |
| Conread position: | 313-790 |
| Cow position: | chr4:69177605-69177136 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 235 |
| Conread position: | 314-483 |
| Cow position: | chr4:13487806-13487637 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:11259438-11259674 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:16938265-16938494 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:17142047-17142282 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:30044687-30044919 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:32835537-32835772 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:35044600-35044366 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:48555252-48555483 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 314-549 |
| Cow position: | chr4:54860456-54860691 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-644 |
| Cow position: | chr4:46952551-46952239 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 314-731 |
| Cow position: | chr4:12228963-12228567 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 338, 115 |
| Conread position: | 314-786 |
| Cow position: | chr4:9263092-9262632 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 215 |
| Conread position: | 314-790 |
| Cow position: | chr4:6262265-6262732 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 314-790 |
| Cow position: | chr4:14526314-14526779 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 237 |
| Conread position: | 314-790 |
| Cow position: | chr4:20827101-20826643 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 33 |
| Conread position: | 314-790 |
| Cow position: | chr4:22906854-22907317 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 187 |
| Conread position: | 314-790 |
| Cow position: | chr4:31956707-31956243 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 216 |
| Conread position: | 314-790 |
| Cow position: | chr4:35239064-35238599 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 237 |
| Conread position: | 314-790 |
| Cow position: | chr4:60736420-60735959 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 184 |
| Conread position: | 316-647 |
| Cow position: | chr4:46297481-46297163 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 213 |
| Conread position: | 317-469 |
| Cow position: | chr4:67531158-67531310 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 98 |
| Conread position: | 317-549 |
| Cow position: | chr4:30414752-30414989 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 87 |
| Conread position: | 317-549 |
| Cow position: | chr4:35552055-35552287 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 19, 177 |
| Conread position: | 319-664 |
| Cow position: | chr4:60136252-60136597 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 244 |
| Conread position: | 321-549 |
| Cow position: | chr4:11737538-11737315 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 322-790 |
| Cow position: | chr4:5233752-5234207 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 111 |
| Conread position: | 322-790 |
| Cow position: | chr4:27763547-27763080 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 300 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 31, 121 |
| Conread position: | 343-549 |
| Cow position: | chr4:5227031-5227238 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 75, 87 |
| Conread position: | 399-790 |
| Cow position: | chr4:45560680-45560299 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 251, 156 |
Show alignments to all cow chromosomes.