Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 281-549 |
| Cow position: | chr5:15705341-15705607 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 296-731 |
| Cow position: | chr5:71134013-71133589 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 306-648 |
| Cow position: | chr5:44903534-44903211 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 307-790 |
| Cow position: | chr5:61893689-61894163 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 323 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 125, 248 |
| Conread position: | 308-482 |
| Cow position: | chr5:27382798-27382971 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 310-465 |
| Cow position: | chr5:47994085-47993930 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-549 |
| Cow position: | chr5:8769185-8769424 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-553 |
| Cow position: | chr5:21509329-21509569 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 311-549 |
| Cow position: | chr5:49869319-49869082 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 313-487 |
| Cow position: | chr5:13540444-13540618 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-491 |
| Cow position: | chr5:35979203-35979025 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr5:22847759-22847996 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 88, 166 |
| Conread position: | 313-549 |
| Cow position: | chr5:53177613-53177849 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-790 |
| Cow position: | chr5:54668353-54668829 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 143, 249 |
| Conread position: | 314-497 |
| Cow position: | chr5:50869295-50869113 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 314-548 |
| Cow position: | chr5:26827683-26827916 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 314-548 |
| Cow position: | chr5:35332480-35332249 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 314-548 |
| Cow position: | chr5:74169394-74169628 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 314-549 |
| Cow position: | chr5:8762615-8762853 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 314-549 |
| Cow position: | chr5:9967790-9967556 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 314-549 |
| Cow position: | chr5:18779645-18779413 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 314-549 |
| Cow position: | chr5:63141946-63141715 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 314-556 |
| Cow position: | chr5:27889225-27889468 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 314-690 |
| Cow position: | chr5:68411449-68411098 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 277, 83 |
| Conread position: | 314-731 |
| Cow position: | chr5:37023829-37024228 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 340, 168 |
| Conread position: | 314-782 |
| Cow position: | chr5:47865436-47864985 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 24 |
| Conread position: | 314-787 |
| Cow position: | chr5:19563273-19563744 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 238 |
| Conread position: | 314-788 |
| Cow position: | chr5:50824110-50823637 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 236, 105 |
| Conread position: | 314-790 |
| Cow position: | chr5:27385278-27384815 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 322 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 314-790 |
| Cow position: | chr5:35483071-35482576 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 260 |
| Conread position: | 314-790 |
| Cow position: | chr5:53941648-53942113 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 237 |
| Conread position: | 314-790 |
| Cow position: | chr5:64799427-64799890 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 338, 182 |
| Conread position: | 314-790 |
| Cow position: | chr5:70712786-70713251 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 82 |
| Conread position: | 317-468 |
| Cow position: | chr5:31096095-31096246 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-549 |
| Cow position: | chr5:667038-667267 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 317-549 |
| Cow position: | chr5:3039338-3039106 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-549 |
| Cow position: | chr5:60097164-60096926 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 317-549 |
| Cow position: | chr5:60151306-60151075 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 317-549 |
| Cow position: | chr5:66391186-66390954 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-790 |
| Cow position: | chr5:33334143-33334606 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 234 |
| Conread position: | 317-790 |
| Cow position: | chr5:47998103-47997652 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 329, 166 |
| Conread position: | 319-544 |
| Cow position: | chr5:5943875-5944091 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 319-549 |
| Cow position: | chr5:30234391-30234163 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 323-642 |
| Cow position: | chr5:14896801-14897110 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 117 |
| Conread position: | 338-790 |
| Cow position: | chr5:59558389-59557955 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 340-549 |
| Cow position: | chr5:67945639-67945847 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 352-549 |
| Cow position: | chr5:9539828-9540023 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 358-683 |
| Cow position: | chr5:13565573-13565915 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 366-790 |
| Cow position: | chr5:18892741-18893152 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 292, 72 |
| Conread position: | 399-786 |
| Cow position: | chr5:17873081-17873457 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 244, 147 |
| Conread position: | 565-790 |
| Cow position: | chr5:13540660-13540893 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 26, 195 |
Show alignments to all cow chromosomes.