Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 271-766 |
| Cow position: | chr6:4150014-4149495 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 273-790 |
| Cow position: | chr6:44459874-44460381 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 299-790 |
| Cow position: | chr6:2597817-2597342 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 194 |
| Conread position: | 299-790 |
| Cow position: | chr6:32521832-32522324 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 302-463 |
| Cow position: | chr6:4816941-4817103 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 303-790 |
| Cow position: | chr6:22875338-22875819 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 247, 10 |
| Conread position: | 308-549 |
| Cow position: | chr6:7870693-7870934 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 309-549 |
| Cow position: | chr6:2982587-2982346 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 310-549 |
| Cow position: | chr6:104183-104422 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-549 |
| Cow position: | chr6:23904336-23904575 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-790 |
| Cow position: | chr6:19261211-19261682 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 177, 26 |
| Conread position: | 312-790 |
| Cow position: | chr6:20532914-20532458 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 344, 170 |
| Conread position: | 312-790 |
| Cow position: | chr6:26939887-26939419 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 181, 90 |
| Conread position: | 313-537 |
| Cow position: | chr6:5075010-5074786 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 313-548 |
| Cow position: | chr6:44691756-44691521 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr6:48724608-48724372 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr6:50350282-50350519 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 313-566 |
| Cow position: | chr6:67428923-67428673 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 236, 17 |
| Conread position: | 313-786 |
| Cow position: | chr6:60865844-60866306 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 238 |
| Conread position: | 313-790 |
| Cow position: | chr6:23898163-23898628 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 238 |
| Conread position: | 313-790 |
| Cow position: | chr6:57793702-57794168 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 314-542 |
| Cow position: | chr6:54538596-54538823 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 314-549 |
| Cow position: | chr6:2981599-2981829 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 314-549 |
| Cow position: | chr6:36675191-36674956 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr6:42768526-42768749 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 314-549 |
| Cow position: | chr6:48025326-48025561 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr6:52961887-52962116 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 314-556 |
| Cow position: | chr6:19041870-19042114 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 314-648 |
| Cow position: | chr6:26246061-26245730 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 314-648 |
| Cow position: | chr6:39448763-39449067 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 314-648 |
| Cow position: | chr6:61409111-61409427 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 314-731 |
| Cow position: | chr6:36923103-36923516 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 237 |
| Conread position: | 314-787 |
| Cow position: | chr6:66256286-66255816 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 69 |
| Conread position: | 314-790 |
| Cow position: | chr6:3661416-3660951 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 215 |
| Conread position: | 314-790 |
| Cow position: | chr6:23212983-23212520 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 84 |
| Conread position: | 314-790 |
| Cow position: | chr6:36924374-36923908 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 237 |
| Conread position: | 314-790 |
| Cow position: | chr6:49756894-49756430 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 119 |
| Conread position: | 314-790 |
| Cow position: | chr6:52418918-52418453 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 237 |
| Conread position: | 314-790 |
| Cow position: | chr6:55844149-55843702 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 329, 83 |
| Conread position: | 314-790 |
| Cow position: | chr6:59689445-59688988 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 240 |
| Conread position: | 314-790 |
| Cow position: | chr6:65680292-65679830 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 135 |
| Conread position: | 317-549 |
| Cow position: | chr6:53430604-53430835 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 317-646 |
| Cow position: | chr6:61434723-61435033 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 53 |
| Conread position: | 318-717 |
| Cow position: | chr6:15034863-15035260 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 323-790 |
| Cow position: | chr6:7527868-7528331 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 342-549 |
| Cow position: | chr6:46533364-46533158 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 352-549 |
| Cow position: | chr6:2159311-2159114 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 354-644 |
| Cow position: | chr6:55522513-55522241 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 368-646 |
| Cow position: | chr6:16554866-16554606 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 381-648 |
| Cow position: | chr6:49411751-49412001 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 11, 171 |
Show alignments to all cow chromosomes.