Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 298-690 |
| Cow position: | chr9:15529031-15529410 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 254 |
| Conread position: | 308-454 |
| Cow position: | chr9:8563344-8563490 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-789 |
| Cow position: | chr9:61331744-61332238 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 105 |
| Conread position: | 310-556 |
| Cow position: | chr9:18985603-18985355 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 311-648 |
| Cow position: | chr9:54203163-54202831 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 200 |
| Conread position: | 313-468 |
| Cow position: | chr9:19261539-19261694 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr9:4618782-4619018 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr9:23526458-23526223 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 313-556 |
| Cow position: | chr9:6668719-6668488 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 237, 37 |
| Conread position: | 313-561 |
| Cow position: | chr9:49295940-49295697 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 188, 169 |
| Conread position: | 313-690 |
| Cow position: | chr9:13539740-13540103 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 239 |
| Conread position: | 313-790 |
| Cow position: | chr9:1892652-1893118 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 313-790 |
| Cow position: | chr9:7958122-7957659 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 50 |
| Conread position: | 313-790 |
| Cow position: | chr9:40280101-40279637 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 127 |
| Conread position: | 314-547 |
| Cow position: | chr9:15817082-15816848 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 314-549 |
| Cow position: | chr9:7661443-7661208 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr9:23521185-23520951 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 314-549 |
| Cow position: | chr9:28537475-28537240 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr9:36467301-36467537 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 314-550 |
| Cow position: | chr9:6601390-6601626 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-553 |
| Cow position: | chr9:64438278-64438042 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 314-556 |
| Cow position: | chr9:8487050-8486807 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 314-556 |
| Cow position: | chr9:15816300-15816543 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 314-644 |
| Cow position: | chr9:60489746-60489434 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 314-699 |
| Cow position: | chr9:7533004-7532632 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 18, 234 |
| Conread position: | 314-790 |
| Cow position: | chr9:4855822-4856285 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 219, 17 |
| Conread position: | 314-790 |
| Cow position: | chr9:7841074-7841532 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 315 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 314-790 |
| Cow position: | chr9:14340699-14340242 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 318 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 275, 51 |
| Conread position: | 314-790 |
| Cow position: | chr9:21861197-21860733 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 227 |
| Conread position: | 314-790 |
| Cow position: | chr9:56833114-56832656 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 338, 170 |
| Conread position: | 314-790 |
| Cow position: | chr9:64598921-64599381 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 41 |
| Conread position: | 317-507 |
| Cow position: | chr9:54534233-54534421 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 317-549 |
| Cow position: | chr9:48548528-48548297 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 321-555 |
| Cow position: | chr9:36710230-36710464 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 322-647 |
| Cow position: | chr9:10572791-10573110 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 194, 76 |
| Conread position: | 323-651 |
| Cow position: | chr9:21516581-21516891 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 324-577 |
| Cow position: | chr9:60030527-60030269 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 105, 14 |
| Conread position: | 331-544 |
| Cow position: | chr9:30655056-30654841 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 355-546 |
| Cow position: | chr9:53048468-53048659 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-549 |
| Cow position: | chr9:10675347-10675181 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 449-790 |
| Cow position: | chr9:30698368-30698012 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 286 |
Show alignments to all cow chromosomes.