Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 281-790 |
| Cow position: | chrX:28601-28118 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 338 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 430, 17 |
| Conread position: | 291-549 |
| Cow position: | chrX:20-277 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 187 |
| Conread position: | 298-549 |
| Cow position: | chrX:835202-834948 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 299-548 |
| Cow position: | chrX:10749381-10749132 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 300-549 |
| Cow position: | chrX:28868433-28868678 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 304-527 |
| Cow position: | chrX:46750932-46750709 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 306-462 |
| Cow position: | chrX:36053567-36053723 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-558 |
| Cow position: | chrX:44682170-44681921 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 310-790 |
| Cow position: | chrX:823941-823461 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 288 |
| Conread position: | 310-790 |
| Cow position: | chrX:9099903-9099440 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 311-553 |
| Cow position: | chrX:38748954-38749194 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 313-549 |
| Cow position: | chrX:16902567-16902332 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 313-648 |
| Cow position: | chrX:29428702-29429009 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 102, 85 |
| Conread position: | 313-650 |
| Cow position: | chrX:32754456-32754118 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 283 |
| Conread position: | 313-790 |
| Cow position: | chrX:2982-2517 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 126, 166 |
| Conread position: | 313-790 |
| Cow position: | chrX:833234-832768 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 183 |
| Conread position: | 313-790 |
| Cow position: | chrX:27980742-27981208 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 238 |
| Conread position: | 313-790 |
| Cow position: | chrX:42402759-42403224 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 314-462 |
| Cow position: | chrX:29126618-29126766 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-482 |
| Cow position: | chrX:47120995-47121165 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 314-547 |
| Cow position: | chrX:43358003-43357778 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 218, 34 |
| Conread position: | 314-549 |
| Cow position: | chrX:9313412-9313186 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 314-549 |
| Cow position: | chrX:15764641-15764404 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 314-549 |
| Cow position: | chrX:39827516-39827750 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 314-549 |
| Cow position: | chrX:48236459-48236221 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 314-556 |
| Cow position: | chrX:35933810-35933565 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 314-556 |
| Cow position: | chrX:44615643-44615886 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 314-690 |
| Cow position: | chrX:18434899-18434546 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 329, 35 |
| Conread position: | 314-731 |
| Cow position: | chrX:25266272-25266676 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 331, 84 |
| Conread position: | 314-737 |
| Cow position: | chrX:29531426-29531019 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 25 |
| Conread position: | 314-790 |
| Cow position: | chrX:16795655-16795186 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 79, 165 |
| Conread position: | 314-790 |
| Cow position: | chrX:23430282-23430749 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 314-790 |
| Cow position: | chrX:25272409-25272876 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 238 |
| Conread position: | 314-790 |
| Cow position: | chrX:28874526-28874061 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 237 |
| Conread position: | 314-790 |
| Cow position: | chrX:32647506-32647041 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 236 |
| Conread position: | 314-790 |
| Cow position: | chrX:32753607-32753143 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 314-790 |
| Cow position: | chrX:34443237-34442775 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 85 |
| Conread position: | 317-546 |
| Cow position: | chrX:45419803-45420034 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 317-549 |
| Cow position: | chrX:4543312-4543097 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 317-549 |
| Cow position: | chrX:9108534-9108303 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 321-648 |
| Cow position: | chrX:25221037-25220709 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 77 |
| Conread position: | 329-593 |
| Cow position: | chrX:8448311-8448052 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 196, 139 |
| Conread position: | 335-549 |
| Cow position: | chrX:16891342-16891550 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 356-790 |
| Cow position: | chrX:4853-5284 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 365-648 |
| Cow position: | chrX:25951348-25951082 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 554-790 |
| Cow position: | chrX:13063946-13063711 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 36, 10 |
Show alignments to all cow chromosomes.