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Cow genome map

           
Conread name:
           
Tra1-TCH01E040033
        

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:69482007-69481817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 167
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr1:95296663-95296448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr1:89388284-89388531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
101, 183
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:100551917-100552178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 5
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chr1:1981168-1980870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
191, 28
               

               
Conread position:
               
4-143
               

               
Cow position:
               
chr1:85596889-85597022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-156
               

               
Cow position:
               
chr1:43703355-43703506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr1:4374391-4374236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr1:60707351-60707507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr1:45288924-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr1:89349910-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr1:61542970-61542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-176
               

               
Cow position:
               
chr1:48769751-48769919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-176
               

               
Cow position:
               
chr1:93810378-93810546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-176
               

               
Cow position:
               
chr1:101632391-101632220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr1:42545838-42545661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr1:46764821-46764994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr1:3352750-3352580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:39510107-39509937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:65028479-65028653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:68676309-68676483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
167, 29
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:82880592-82880765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr1:42138804-42138982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr1:42360222-42360415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr1:85647834-85647651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr1:58036966-58037150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr1:69264758-69264939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr1:52039580-52039770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr1:81913207-81913023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr1:84255711-84255902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr1:92989537-92989725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr1:4032576-4032772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr1:19885329-19885517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr1:72105359-72105542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr1:93043967-93044153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr1:23512711-23512524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr1:47233531-47233341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr1:78697822-78697636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr1:26895030-26894834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr1:85550130-85549941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr1:97696690-97696884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr1:39069007-39068818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr1:93554786-93554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:6240331-6240142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:8347071-8347264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:50991882-50992073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:52994968-52995169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:53308446-53308253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:68672652-68672461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:81580117-81580318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:85162602-85162404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:90868493-90868306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:95153167-95153363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:98551664-98551860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr1:52753221-52753018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr1:97231906-97232106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
170, 40
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr1:98511876-98512070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
186, 27
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr1:34300602-34300406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
189, 18
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr1:5539330-5539132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr1:7023066-7023266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr1:53458644-53458848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
174, 40
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr1:89342047-89341833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 190
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr1:7186730-7186944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
4-217
               

               
Cow position:
               
chr1:50964182-50963972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr1:635141-635364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
216, 17
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr1:69695044-69694830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr1:13637717-13637490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
217, 37
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr1:86578907-86579147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr1:90864345-90864116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
214, 33
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr1:78809828-78810062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
177, 27
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr1:13548036-13547795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr1:43311830-43311583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr1:95557984-95558225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr1:8564-8804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
219, 21
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr1:60986933-60987178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr1:91816824-91816582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
216, 22
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr1:1499744-1499503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
214, 21
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr1:6941411-6941653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr1:61884860-61885099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr1:25734816-25735056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
170, 18
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr1:56618703-56618468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
219, 35
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr1:63390823-63390576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 219
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:724685-724928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
186, 170
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:6228636-6228392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
216, 27
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:12464718-12464476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:19515667-19515428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:22944078-22943839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:28563625-28563372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:29935439-29935202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:33998704-33998938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
214, 96
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:35162357-35162594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
215, 28
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:43505472-43505713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:43855249-43855478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:45223527-45223765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
216, 40
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:46143515-46143278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 18
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:47886538-47886291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:48206588-48206351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:49317548-49317312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:51394363-51394607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:53622907-53623143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
214, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:54258510-54258758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 127
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:70538555-70538795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 103
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:72813562-72813806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:79003921-79004165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
178, 110
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:79165137-79164893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:81481437-81481196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
216, 178
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:82337833-82337591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:86340526-86340269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:89509975-89509739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:91066205-91065968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
216, 41
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:95072277-95072532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:97717629-97717387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
46, 136
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:98030862-98031104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 158
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:98453534-98453784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:6826347-6826102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
180, 28
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:6958824-6959069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:21954284-21954037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:22728999-22729244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 182
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:48444246-48444001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:54199434-54199204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:72068891-72068641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr1:2976046-2975798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr1:89448845-89449094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr1:3323813-3324079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
111, 155
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr1:74084247-74083983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:4243394-4243123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:8374508-8374247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:15333832-15334100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:22525823-22526086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:48618292-48618041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:59518866-59519117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:68855110-68855372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:76470603-76470863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
175, 27
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:92197400-92197665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:96365611-96365855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
216, 35
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr1:48105486-48105213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr1:64572461-64572721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr1:1877977-1878231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
216, 33
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr1:29626964-29626699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:43352710-43352443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:68817851-68817592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:78079668-78079937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
154, 21
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:91023520-91023254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:102753800-102754062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr1:61846093-61846368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr1:69539645-69539895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr1:69678381-69678113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
85, 47
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr1:88913266-88913533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr1:37322054-37321795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:7739893-7740160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
216, 97
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:26178865-26178594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:53374379-53374639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
216, 58
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:90621560-90621291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 5
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr1:87072643-87072913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr1:30189094-30189374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 250
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr1:41056624-41056896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
219, 29
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr1:4391335-4391046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
27, 258
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:23488559-23488284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:55429011-55428727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:78091983-78092265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:79640343-79640072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
219, 178
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:96964268-96964538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
219, 16
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr1:50931029-50930755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
221, 40
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr1:71350779-71350504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
216, 36
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr1:87197763-87198049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
25, 183
               

               
Conread position:
               
4-285
               

               
Cow position:
               
chr1:25383611-25383898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr1:3815747-3815454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr1:63434858-63434575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
159, 30
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr1:81228394-81228108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
31, 182
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr1:81290451-81290728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr1:99642418-99642141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
4-289
               

               
Cow position:
               
chr1:35554853-35555138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr1:42398246-42397965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
216, 131
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr1:89076681-89076399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
170, 21
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr1:13810599-13810887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
161, 21
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr1:97794601-97794321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
173, 37
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr1:75744808-75745090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
216, 37
               

               
Conread position:
               
4-296
               

               
Cow position:
               
chr1:42175672-42175959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
4-296
               

               
Cow position:
               
chr1:102266322-102266037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
85, 37
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr1:96081428-96081706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
178, 28
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr1:53370029-53370318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr1:54267986-54267703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
216, 13
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr1:73545960-73545673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
71, 18
               

               
Conread position:
               
4-305
               

               
Cow position:
               
chr1:47790718-47790428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
4-309
               

               
Cow position:
               
chr1:30862464-30862157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
184, 102
               

               
Conread position:
               
4-311
               

               
Cow position:
               
chr1:83072385-83072694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
4-317
               

               
Cow position:
               
chr1:38418975-38419283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
184, 21
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr1:85028901-85029073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:84768931-84768742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chr1:71253604-71253415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr1:3965788-3966007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr1:49825121-49824876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 176
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr1:84811994-84811752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 171
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr1:77232625-77232365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
175, 24
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr1:197059-196796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr1:78066590-78066326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr1:52912950-52912675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
177, 46
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr1:56225415-56225685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
217, 175
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr1:86682613-86682344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
215, 20
               

               
Conread position:
               
6-231
               

               
Cow position:
               
chr1:61742020-61741792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
107, 93
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr1:19568799-19569030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
151, 29
               

               
Conread position:
               
6-288
               

               
Cow position:
               
chr1:10942148-10941869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
6-288
               

               
Cow position:
               
chr1:10964238-10964517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr1:71770369-71770078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
20, 252
               

               
Conread position:
               
7-166
               

               
Cow position:
               
chr1:75141948-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr1:43822351-43822515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chr1:4291111-4291285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chr1:98594523-98594686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr1:95974345-95974531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 176
               

               
Conread position:
               
7-193
               

               
Cow position:
               
chr1:45007415-45007604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
7-195
               

               
Cow position:
               
chr1:74927833-74928020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr1:71796365-71796170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr1:98575996-98576186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr1:816461-816272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr1:69127216-69127024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
7-202
               

               
Cow position:
               
chr1:92965345-92965150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
181, 24
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr1:24728889-24728690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
7-218
               

               
Cow position:
               
chr1:48581082-48581286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr1:186326-186105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr1:70025419-70025184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr1:10030257-10030017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr1:101268057-101267816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr1:28059018-28058779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr1:39681946-39682184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
181, 21
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr1:42968364-42968131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
213, 15
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr1:61185428-61185191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr1:2971861-2972108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr1:5776091-5776334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr1:20667791-20667562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
213, 24
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr1:18936884-18936648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
216, 34
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr1:42541548-42541780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr1:70227746-70227502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
162, 151
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chr1:93528649-93528884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr1:70297227-70297474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
201, 28
               

               
Conread position:
               
7-253
               

               
Cow position:
               
chr1:500123-500369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
212, 195
               

               
Conread position:
               
7-268
               

               
Cow position:
               
chr1:44075764-44075520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
213, 14
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr1:95637781-95638044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
213, 24
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr1:648275-648539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
213, 15
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr1:6394509-6394763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
177, 23
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr1:34771554-34771292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
175, 26
               

               
Conread position:
               
7-272
               

               
Cow position:
               
chr1:42868987-42868742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
126, 34
               

               
Conread position:
               
7-273
               

               
Cow position:
               
chr1:23186850-23186592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
213, 107
               

               
Conread position:
               
7-282
               

               
Cow position:
               
chr1:874601-874886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
7-282
               

               
Cow position:
               
chr1:49753430-49753707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-282
               

               
Cow position:
               
chr1:57089733-57089459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 143
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr1:71228037-71228319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
7-285
               

               
Cow position:
               
chr1:98467754-98468027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
215, 25
               

               
Conread position:
               
7-286
               

               
Cow position:
               
chr1:68217413-68217141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
213, 99
               

               
Conread position:
               
7-286
               

               
Cow position:
               
chr1:100753479-100753755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr1:31607944-31607673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr1:83659330-83659051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
211, 243
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr1:41289827-41289555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
150, 13
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr1:86113454-86113170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr1:6102961-6102677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr1:21560966-21561246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
164, 15
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr1:98583708-98583972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr1:11226294-11226002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
7-296
               

               
Cow position:
               
chr1:73584460-73584172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
163, 18
               

               
Conread position:
               
7-296
               

               
Cow position:
               
chr1:75250062-75250340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
7-297
               

               
Cow position:
               
chr1:54156783-54156495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 18
               

               
Conread position:
               
7-297
               

               
Cow position:
               
chr1:56477538-56477823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 177
               

               
Conread position:
               
7-300
               

               
Cow position:
               
chr1:64804154-64803863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 248
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr1:22823853-22824151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:76613186-76612896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 24
               

               
Conread position:
               
7-312
               

               
Cow position:
               
chr1:63596105-63595801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr1:81355757-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
8-180
               

               
Cow position:
               
chr1:102504527-102504692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
8-187
               

               
Cow position:
               
chr1:4027819-4027991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
8-196
               

               
Cow position:
               
chr1:100569106-100569293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr1:88397894-88397660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr1:53603705-53603945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
212, 0
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr1:10616832-10617079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr1:48605982-48606222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
210, 10
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr1:11913931-11913692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
29, 121
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr1:15547423-15547654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
212, 25
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr1:17196678-17196436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
212, 167
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr1:37726468-37726225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
150, 14
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr1:5597258-5596997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:7971367-7971623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
8-293
               

               
Cow position:
               
chr1:38278079-38277790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
8-303
               

               
Cow position:
               
chr1:101866547-101866260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
211, 63
               

               
Conread position:
               
9-164
               

               
Cow position:
               
chr1:61735485-61735330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-174
               

               
Cow position:
               
chr1:37309565-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
9-178
               

               
Cow position:
               
chr1:54478277-54478448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
9-182
               

               
Cow position:
               
chr1:6972482-6972649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
9-194
               

               
Cow position:
               
chr1:19180327-19180512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
178, 118
               

               
Conread position:
               
9-199
               

               
Cow position:
               
chr1:48730875-48730693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
9-200
               

               
Cow position:
               
chr1:10778518-10778704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr1:91811734-91811949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
149, 23
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr1:98050343-98050120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
211, 26
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:51609326-51609561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr1:36920973-36921206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
211, 16
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr1:57880833-57880595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
208, 16
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr1:68688144-68688380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
208, 16
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr1:53402740-53402971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr1:34856678-34856436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr1:77739668-77739913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
10, 156
               

               
Conread position:
               
9-250
               

               
Cow position:
               
chr1:30983538-30983302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
147, 18
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr1:49082693-49082938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
9-270
               

               
Cow position:
               
chr1:30035165-30035430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 126
               

               
Conread position:
               
9-271
               

               
Cow position:
               
chr1:56225741-56225994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
212, 23
               

               
Conread position:
               
9-289
               

               
Cow position:
               
chr1:49077381-49077094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
148, 185
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr1:68276367-68276647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
199, 13
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr1:94687820-94687539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
259, 26
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr1:65103571-65103880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
173, 92
               

               
Conread position:
               
10-175
               

               
Cow position:
               
chr1:30504455-30504617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
10-189
               

               
Cow position:
               
chr1:56832821-56832649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
10-200
               

               
Cow position:
               
chr1:89835203-89835392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
10-200
               

               
Cow position:
               
chr1:99221401-99221215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr1:2462333-2462532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr1:86073548-86073749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
10-224
               

               
Cow position:
               
chr1:32001367-32001161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr1:74956067-74955844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr1:11172329-11172557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
210, 21
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr1:31357558-31357325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
170, 133
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr1:60490456-60490713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
164, 35
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr1:60961938-60962198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr1:92996943-92996680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 157
               

               
Conread position:
               
10-274
               

               
Cow position:
               
chr1:35600343-35600080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr1:73020709-73020440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
10-296
               

               
Cow position:
               
chr1:74751682-74751397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
10-310
               

               
Cow position:
               
chr1:81390870-81391170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
11-201
               

               
Cow position:
               
chr1:77880783-77880593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:4518006-4517764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
11-271
               

               
Cow position:
               
chr1:65318529-65318785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 14
               

               
Conread position:
               
11-285
               

               
Cow position:
               
chr1:22035564-22035828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
11-287
               

               
Cow position:
               
chr1:71665980-71665710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
13-272
               

               
Cow position:
               
chr1:71790193-71789940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
207, 26
               

               
Conread position:
               
13-287
               

               
Cow position:
               
chr1:10633003-10633269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
243, 21
               

               
Conread position:
               
14-177
               

               
Cow position:
               
chr1:43312075-43311913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
14-200
               

               
Cow position:
               
chr1:81613344-81613529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
14-242
               

               
Cow position:
               
chr1:6294544-6294312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
15-201
               

               
Cow position:
               
chr1:80336292-80336108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr1:94226596-94226356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
158, 16
               

               
Conread position:
               
15-274
               

               
Cow position:
               
chr1:81569073-81568816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
23, 168
               

               
Conread position:
               
16-240
               

               
Cow position:
               
chr1:4582509-4582733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
204, 16
               

               
Conread position:
               
16-246
               

               
Cow position:
               
chr1:62997756-62997987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
17-275
               

               
Cow position:
               
chr1:79718769-79719019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
18-183
               

               
Cow position:
               
chr1:79087903-79087735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
18-200
               

               
Cow position:
               
chr1:8670733-8670915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
133, 13
               

               
Conread position:
               
18-249
               

               
Cow position:
               
chr1:95835836-95835606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
202, 17
               

               
Conread position:
               
19-271
               

               
Cow position:
               
chr1:21093078-21093330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
203, 22
               

               
Conread position:
               
20-193
               

               
Cow position:
               
chr1:69227479-69227310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:45478897-45478721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:71916155-71915978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
20-290
               

               
Cow position:
               
chr1:67919095-67919359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
22-240
               

               
Cow position:
               
chr1:54628891-54628672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
198, 176
               

               
Conread position:
               
22-247
               

               
Cow position:
               
chr1:79339593-79339370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chr1:70428701-70428925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
198, 12
               

               
Conread position:
               
22-293
               

               
Cow position:
               
chr1:63138805-63139081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
198, 13
               

               
Conread position:
               
23-246
               

               
Cow position:
               
chr1:867768-867992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 39
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr1:1053546-1053768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
194, 99
               

               
Conread position:
               
24-290
               

               
Cow position:
               
chr1:84104096-84103832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
196, 222
               

               
Conread position:
               
25-178
               

               
Cow position:
               
chr1:20732670-20732823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
25-186
               

               
Cow position:
               
chr1:42178706-42178872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
25-230
               

               
Cow position:
               
chr1:2010284-2010080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
190, 47
               

               
Conread position:
               
25-246
               

               
Cow position:
               
chr1:82637228-82637443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
195, 10
               

               
Conread position:
               
25-249
               

               
Cow position:
               
chr1:26895845-26895623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
195, 150
               

               
Conread position:
               
25-283
               

               
Cow position:
               
chr1:32217217-32217462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
192, 42
               

               
Conread position:
               
25-304
               

               
Cow position:
               
chr1:72841301-72841585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
163, 139
               

               
Conread position:
               
27-194
               

               
Cow position:
               
chr1:54157262-54157431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
27-201
               

               
Cow position:
               
chr1:24791978-24791804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
27-211
               

               
Cow position:
               
chr1:57420763-57420583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
176, 100
               

               
Conread position:
               
27-239
               

               
Cow position:
               
chr1:47939995-47939784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
138, 8
               

               
Conread position:
               
29-249
               

               
Cow position:
               
chr1:16962040-16961805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
30-199
               

               
Cow position:
               
chr1:89785881-89786049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
30-201
               

               
Cow position:
               
chr1:3904589-3904419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 74
               

               
Conread position:
               
30-209
               

               
Cow position:
               
chr1:6965114-6964929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
30-255
               

               
Cow position:
               
chr1:2075380-2075156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
31-248
               

               
Cow position:
               
chr1:85867561-85867788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
31-249
               

               
Cow position:
               
chr1:16767114-16766897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
31-249
               

               
Cow position:
               
chr1:62034854-62034646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
31-290
               

               
Cow position:
               
chr1:36079795-36080055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 213
               

               
Conread position:
               
32-235
               

               
Cow position:
               
chr1:29481658-29481452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
32-235
               

               
Cow position:
               
chr1:31716296-31716089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr1:91649444-91649229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
188, 74
               

               
Conread position:
               
32-289
               

               
Cow position:
               
chr1:36688405-36688155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
185, 122
               

               
Conread position:
               
32-290
               

               
Cow position:
               
chr1:52435244-52435501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
6, 208
               

               
Conread position:
               
32-299
               

               
Cow position:
               
chr1:92523987-92524251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
180, 221
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:72422435-72422156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
188, 92
               

               
Conread position:
               
33-192
               

               
Cow position:
               
chr1:80757118-80756962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
33-199
               

               
Cow position:
               
chr1:77892113-77892276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
148, 29
               

               
Conread position:
               
33-200
               

               
Cow position:
               
chr1:92684721-92684553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
33-248
               

               
Cow position:
               
chr1:40215441-40215224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
33-248
               

               
Cow position:
               
chr1:68961302-68961515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
187, 60
               

               
Conread position:
               
33-248
               

               
Cow position:
               
chr1:102349772-102349571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
33-252
               

               
Cow position:
               
chr1:40531126-40530914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
33-256
               

               
Cow position:
               
chr1:11729151-11729367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
187, 8
               

               
Conread position:
               
33-269
               

               
Cow position:
               
chr1:6731154-6731384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
33-272
               

               
Cow position:
               
chr1:55229950-55230181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
184, 154
               

               
Conread position:
               
33-286
               

               
Cow position:
               
chr1:81515205-81515461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
33-293
               

               
Cow position:
               
chr1:83677363-83677097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
33-296
               

               
Cow position:
               
chr1:17875733-17875481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
190, 73
               

               
Conread position:
               
33-299
               

               
Cow position:
               
chr1:96019203-96019476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
34-174
               

               
Cow position:
               
chr1:95215215-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-194
               

               
Cow position:
               
chr1:9092119-9091957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
34-194
               

               
Cow position:
               
chr1:97778967-97779126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
34-198
               

               
Cow position:
               
chr1:80422252-80422409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
34-235
               

               
Cow position:
               
chr1:50461807-50461605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
186, 49
               

               
Conread position:
               
34-245
               

               
Cow position:
               
chr1:24909077-24908857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 142
               

               
Conread position:
               
34-245
               

               
Cow position:
               
chr1:79846276-79846062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
34-246
               

               
Cow position:
               
chr1:91861324-91861111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
186, 53
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr1:3923824-3923615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
186, 10
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr1:89381252-89381463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
189, 10
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr1:102648253-102648469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
186, 156
               

               
Conread position:
               
34-254
               

               
Cow position:
               
chr1:87095239-87095017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
34-261
               

               
Cow position:
               
chr1:95618617-95618843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
178, 145
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr1:102468641-102468413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
34-274
               

               
Cow position:
               
chr1:42887302-42887070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
189, 140
               

               
Conread position:
               
34-290
               

               
Cow position:
               
chr1:102768155-102768400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
34-293
               

               
Cow position:
               
chr1:10881107-10880845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 110
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:20864033-20864189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:97938939-97939098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
35-227
               

               
Cow position:
               
chr1:57637333-57637527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr1:7305945-7306154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr1:92370393-92370183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
185, 122
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr1:18152436-18152649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr1:75411863-75411650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr1:85580605-85580818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr1:96304993-96304786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
183, 151
               

               
Conread position:
               
35-247
               

               
Cow position:
               
chr1:43389071-43388867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
183, 14
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr1:6867489-6867274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr1:52618805-52619018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr1:62964242-62964456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
185, 139
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr1:83982404-83982188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr1:91755256-91755471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr1:67529031-67529245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
183, 171
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr1:73721337-73721553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr1:7748190-7748422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
151, 9
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr1:7752356-7752586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
183, 9
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr1:86062009-86061771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
35-272
               

               
Cow position:
               
chr1:44611731-44611495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
185, 211
               

               
Conread position:
               
35-273
               

               
Cow position:
               
chr1:90267695-90267933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr1:17055970-17056201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr1:94212198-94212432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
35-275
               

               
Cow position:
               
chr1:96038824-96038586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
185, 137
               

               
Conread position:
               
35-281
               

               
Cow position:
               
chr1:55753239-55753002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
35-288
               

               
Cow position:
               
chr1:22192745-22192996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
185, 152
               

               
Conread position:
               
35-289
               

               
Cow position:
               
chr1:13157161-13157420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 128
               

               
Conread position:
               
35-298
               

               
Cow position:
               
chr1:70094310-70094571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chr1:31934483-31934745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 92
               

               
Conread position:
               
35-311
               

               
Cow position:
               
chr1:53394040-53394321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 106
               

               
Conread position:
               
35-319
               

               
Cow position:
               
chr1:11772109-11771825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
185, 103
               

               
Conread position:
               
36-230
               

               
Cow position:
               
chr1:15206895-15206704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
184, 91
               

               
Conread position:
               
36-245
               

               
Cow position:
               
chr1:49433287-49433076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
36-246
               

               
Cow position:
               
chr1:58653464-58653252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
36-248
               

               
Cow position:
               
chr1:63530535-63530747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
186, 146
               

               
Conread position:
               
36-249
               

               
Cow position:
               
chr1:41027051-41027261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 68
               

               
Conread position:
               
36-249
               

               
Cow position:
               
chr1:98413749-98413965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
139, 207
               

               
Conread position:
               
36-252
               

               
Cow position:
               
chr1:78857353-78857134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
36-269
               

               
Cow position:
               
chr1:38706877-38706648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
184, 139
               

               
Conread position:
               
36-270
               

               
Cow position:
               
chr1:77986448-77986210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
36-271
               

               
Cow position:
               
chr1:12222630-12222397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
184, 217
               

               
Conread position:
               
36-285
               

               
Cow position:
               
chr1:101834796-101835045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
136, 56
               

               
Conread position:
               
36-287
               

               
Cow position:
               
chr1:97144489-97144244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
36-290
               

               
Cow position:
               
chr1:72011836-72011596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
36-292
               

               
Cow position:
               
chr1:100823014-100823268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
37-200
               

               
Cow position:
               
chr1:84010750-84010908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
37-201
               

               
Cow position:
               
chr1:93149709-93149874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
37-218
               

               
Cow position:
               
chr1:52488002-52487822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 89
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr1:8287651-8287441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
183, 7
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr1:83025186-83024976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
115, 138
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr1:86057093-86056889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
186, 17
               

               
Conread position:
               
37-252
               

               
Cow position:
               
chr1:22730712-22730925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
183, 135
               

               
Conread position:
               
37-252
               

               
Cow position:
               
chr1:98897716-98897498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
143, 207
               

               
Conread position:
               
37-283
               

               
Cow position:
               
chr1:52496750-52496992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
181, 28
               

               
Conread position:
               
37-290
               

               
Cow position:
               
chr1:77425080-77425336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 69
               

               
Conread position:
               
37-290
               

               
Cow position:
               
chr1:86110759-86110517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
233, 69
               

               
Conread position:
               
37-311
               

               
Cow position:
               
chr1:84906085-84905811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
182, 209
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:74082002-74081842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
38-282
               

               
Cow position:
               
chr1:81858923-81858683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
32, 155
               

               
Conread position:
               
38-286
               

               
Cow position:
               
chr1:26201215-26201454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
184, 54
               

               
Conread position:
               
39-249
               

               
Cow position:
               
chr1:26983990-26984201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
181, 56
               

               
Conread position:
               
39-302
               

               
Cow position:
               
chr1:49334412-49334152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
129, 48
               

               
Conread position:
               
40-196
               

               
Cow position:
               
chr1:3914937-3914782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
40-248
               

               
Cow position:
               
chr1:63078991-63079189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
40-250
               

               
Cow position:
               
chr1:49980691-49980898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
180, 76
               

               
Conread position:
               
40-252
               

               
Cow position:
               
chr1:16061023-16060816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
180, 134
               

               
Conread position:
               
40-275
               

               
Cow position:
               
chr1:31819092-31819314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
40-275
               

               
Cow position:
               
chr1:68127209-68126979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
142, 165
               

               
Conread position:
               
40-275
               

               
Cow position:
               
chr1:99570506-99570287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
40-282
               

               
Cow position:
               
chr1:50765593-50765832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
180, 55
               

               
Conread position:
               
40-294
               

               
Cow position:
               
chr1:20871578-20871329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
183, 213
               

               
Conread position:
               
41-249
               

               
Cow position:
               
chr1:101177497-101177711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
95, 81
               

               
Conread position:
               
41-268
               

               
Cow position:
               
chr1:51860579-51860360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
179, 141
               

               
Conread position:
               
41-285
               

               
Cow position:
               
chr1:31795023-31794787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
179, 59
               

               
Conread position:
               
41-286
               

               
Cow position:
               
chr1:36998168-36998405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
176, 25
               

               
Conread position:
               
41-286
               

               
Cow position:
               
chr1:57087824-57088072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
41-287
               

               
Cow position:
               
chr1:46245767-46245513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 106
               

               
Conread position:
               
41-299
               

               
Cow position:
               
chr1:852152-852408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
177, 212
               

               
Conread position:
               
42-200
               

               
Cow position:
               
chr1:33996941-33996783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
42-200
               

               
Cow position:
               
chr1:43148565-43148403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
42-237
               

               
Cow position:
               
chr1:76735495-76735299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
146, 63
               

               
Conread position:
               
42-248
               

               
Cow position:
               
chr1:69940840-69940636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
137, 161
               

               
Conread position:
               
42-249
               

               
Cow position:
               
chr1:67585543-67585740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
178, 94
               

               
Conread position:
               
42-249
               

               
Cow position:
               
chr1:73719444-73719660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
42-274
               

               
Cow position:
               
chr1:5751296-5751525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
178, 166
               

               
Conread position:
               
42-282
               

               
Cow position:
               
chr1:21955389-21955154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
182, 24
               

               
Conread position:
               
43-249
               

               
Cow position:
               
chr1:6381756-6381965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
139, 98
               

               
Conread position:
               
43-283
               

               
Cow position:
               
chr1:45315652-45315412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
139, 215
               

               
Conread position:
               
43-290
               

               
Cow position:
               
chr1:242541-242779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
180, 139
               

               
Conread position:
               
44-169
               

               
Cow position:
               
chr1:77683337-77683462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-195
               

               
Cow position:
               
chr1:24570962-24570813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
44-199
               

               
Cow position:
               
chr1:45874093-45873928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
44-211
               

               
Cow position:
               
chr1:19304556-19304722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chr1:802330-802126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
44-249
               

               
Cow position:
               
chr1:61011166-61011364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
176, 138
               

               
Conread position:
               
44-281
               

               
Cow position:
               
chr1:3605901-3605669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 130
               

               
Conread position:
               
44-287
               

               
Cow position:
               
chr1:61005577-61005335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
179, 72
               

               
Conread position:
               
44-295
               

               
Cow position:
               
chr1:74027252-74026998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
44-295
               

               
Cow position:
               
chr1:87083614-87083864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
176, 199
               

               
Conread position:
               
45-234
               

               
Cow position:
               
chr1:6031610-6031801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
46-272
               

               
Cow position:
               
chr1:6790762-6790982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
46-276
               

               
Cow position:
               
chr1:10674138-10674360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
48-249
               

               
Cow position:
               
chr1:24133071-24132874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
172, 52
               

               
Conread position:
               
48-272
               

               
Cow position:
               
chr1:66898509-66898280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
48-296
               

               
Cow position:
               
chr1:759429-759182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 199
               

               
Conread position:
               
49-178
               

               
Cow position:
               
chr1:83301962-83301831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
49-196
               

               
Cow position:
               
chr1:22461248-22461101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
49-272
               

               
Cow position:
               
chr1:68688573-68688791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
49-272
               

               
Cow position:
               
chr1:95152861-95153088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
49-287
               

               
Cow position:
               
chr1:4444852-4444616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
174, 204
               

               
Conread position:
               
49-293
               

               
Cow position:
               
chr1:1489410-1489177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
171, 10
               

               
Conread position:
               
50-289
               

               
Cow position:
               
chr1:101439491-101439257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
52-199
               

               
Cow position:
               
chr1:64019528-64019381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
52-200
               

               
Cow position:
               
chr1:92603011-92603160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
52-200
               

               
Cow position:
               
chr1:97750626-97750478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr1:101280741-101280548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
171, 38
               

               
Conread position:
               
52-277
               

               
Cow position:
               
chr1:76739916-76739696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
52-287
               

               
Cow position:
               
chr1:21681544-21681311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
171, 201
               

               
Conread position:
               
53-201
               

               
Cow position:
               
chr1:69445323-69445474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr1:6590027-6590226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr1:11489167-11488969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 183
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr1:101525931-101525731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
53-257
               

               
Cow position:
               
chr1:61134398-61134612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
53-337
               

               
Cow position:
               
chr1:93590592-93590324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 74
               

               
Conread position:
               
54-268
               

               
Cow position:
               
chr1:73551515-73551298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 201
               

               
Conread position:
               
55-275
               

               
Cow position:
               
chr1:100852705-100852914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
162, 127
               

               
Conread position:
               
56-249
               

               
Cow position:
               
chr1:95156967-95156776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
156, 128
               

               
Conread position:
               
56-274
               

               
Cow position:
               
chr1:7442972-7443192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
6, 201
               

               
Conread position:
               
57-200
               

               
Cow position:
               
chr1:82877183-82877325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
57-249
               

               
Cow position:
               
chr1:76518420-76518614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
58-293
               

               
Cow position:
               
chr1:70344039-70344274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
132, 184
               

               
Conread position:
               
59-257
               

               
Cow position:
               
chr1:23633932-23633731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 196
               

               
Conread position:
               
59-270
               

               
Cow position:
               
chr1:56913529-56913326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 100
               

               
Conread position:
               
59-275
               

               
Cow position:
               
chr1:731974-731759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 184
               

               
Conread position:
               
60-246
               

               
Cow position:
               
chr1:5821514-5821702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
60-247
               

               
Cow position:
               
chr1:69691714-69691525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
60-250
               

               
Cow position:
               
chr1:54569698-54569891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr1:32014199-32014413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
60-287
               

               
Cow position:
               
chr1:81364261-81364492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
163, 192
               

               
Conread position:
               
61-186
               

               
Cow position:
               
chr1:60821-60948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
62-272
               

               
Cow position:
               
chr1:56719345-56719548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
63-230
               

               
Cow position:
               
chr1:60367383-60367214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
64-178
               

               
Cow position:
               
chr1:4027439-4027553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
65-277
               

               
Cow position:
               
chr1:96518699-96518915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 194
               

               
Conread position:
               
65-287
               

               
Cow position:
               
chr1:34001053-34001265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
66-276
               

               
Cow position:
               
chr1:68710284-68710496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 191
               

               
Conread position:
               
66-288
               

               
Cow position:
               
chr1:1802172-1802394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 186
               

               
Conread position:
               
66-290
               

               
Cow position:
               
chr1:1347628-1347408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 177
               

               
Conread position:
               
66-290
               

               
Cow position:
               
chr1:99637247-99637020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
67-235
               

               
Cow position:
               
chr1:73534633-73534464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
153, 101
               

               
Conread position:
               
67-246
               

               
Cow position:
               
chr1:71070551-71070370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
67-270
               

               
Cow position:
               
chr1:36018769-36018573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
67-283
               

               
Cow position:
               
chr1:102423801-102424014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
153, 164
               

               
Conread position:
               
67-287
               

               
Cow position:
               
chr1:43296710-43296488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
136, 20
               

               
Conread position:
               
67-293
               

               
Cow position:
               
chr1:67674594-67674381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
68-200
               

               
Cow position:
               
chr1:46100831-46100699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
68-218
               

               
Cow position:
               
chr1:67539567-67539718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
68-245
               

               
Cow position:
               
chr1:52450780-52450951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
68-246
               

               
Cow position:
               
chr1:31630278-31630097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr1:69411689-69411506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr1:96201307-96201126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 80
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr1:98557110-98556929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 116
               

               
Conread position:
               
68-250
               

               
Cow position:
               
chr1:78030023-78029836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
68-250
               

               
Cow position:
               
chr1:87149806-87149626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 116
               

               
Conread position:
               
68-268
               

               
Cow position:
               
chr1:60603568-60603366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 189
               

               
Conread position:
               
68-276
               

               
Cow position:
               
chr1:49297660-49297863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 104
               

               
Conread position:
               
68-277
               

               
Cow position:
               
chr1:98380288-98380082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
152, 93
               

               
Conread position:
               
68-283
               

               
Cow position:
               
chr1:81473164-81473377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
103, 87
               

               
Conread position:
               
68-285
               

               
Cow position:
               
chr1:45099769-45099975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
69-246
               

               
Cow position:
               
chr1:69346969-69346790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
69-249
               

               
Cow position:
               
chr1:25022065-25021889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
151, 117
               

               
Conread position:
               
69-249
               

               
Cow position:
               
chr1:81638558-81638728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
69-270
               

               
Cow position:
               
chr1:63460888-63461084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
69-303
               

               
Cow position:
               
chr1:86486686-86486921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
151, 182
               

               
Conread position:
               
70-195
               

               
Cow position:
               
chr1:45673765-45673890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
70-298
               

               
Cow position:
               
chr1:70483323-70483100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
148, 112
               

               
Conread position:
               
70-307
               

               
Cow position:
               
chr1:20537216-20537455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
150, 105
               

               
Conread position:
               
71-249
               

               
Cow position:
               
chr1:15875672-15875848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
149, 103
               

               
Conread position:
               
71-265
               

               
Cow position:
               
chr1:69532511-69532320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
146, 118
               

               
Conread position:
               
72-249
               

               
Cow position:
               
chr1:70416747-70416571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 110
               

               
Conread position:
               
72-249
               

               
Cow position:
               
chr1:94823379-94823200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
72-274
               

               
Cow position:
               
chr1:64457978-64458187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 55
               

               
Conread position:
               
72-274
               

               
Cow position:
               
chr1:77685968-77685768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
146, 181
               

               
Conread position:
               
72-276
               

               
Cow position:
               
chr1:40303564-40303765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
148, 110
               

               
Conread position:
               
73-249
               

               
Cow position:
               
chr1:29671210-29671031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
116, 168
               

               
Conread position:
               
73-249
               

               
Cow position:
               
chr1:84815143-84815324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
74-249
               

               
Cow position:
               
chr1:40181610-40181432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
74-290
               

               
Cow position:
               
chr1:84594903-84595118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
145, 179
               

               
Conread position:
               
75-250
               

               
Cow position:
               
chr1:83683155-83682981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
145, 100
               

               
Conread position:
               
76-200
               

               
Cow position:
               
chr1:99024214-99024090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
76-235
               

               
Cow position:
               
chr1:70146894-70146733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
76-249
               

               
Cow position:
               
chr1:69442501-69442326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
76-273
               

               
Cow position:
               
chr1:53442095-53441906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
76-293
               

               
Cow position:
               
chr1:69378582-69378368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
77-282
               

               
Cow position:
               
chr1:32035692-32035493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
77-282
               

               
Cow position:
               
chr1:97986431-97986226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr1:96477834-96478036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
140, 30
               

               
Conread position:
               
79-273
               

               
Cow position:
               
chr1:102797978-102797790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
141, 158
               

               
Conread position:
               
79-311
               

               
Cow position:
               
chr1:24792807-24793038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
141, 167
               

               
Conread position:
               
80-237
               

               
Cow position:
               
chr1:3667010-3666851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
80-281
               

               
Cow position:
               
chr1:74919958-74919758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
80-287
               

               
Cow position:
               
chr1:31801899-31801696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
32, 112
               

               
Conread position:
               
80-290
               

               
Cow position:
               
chr1:92069776-92069561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 36
               

               
Conread position:
               
80-297
               

               
Cow position:
               
chr1:79178649-79178864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
140, 173
               

               
Conread position:
               
81-248
               

               
Cow position:
               
chr1:23372881-23373049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
139, 94
               

               
Conread position:
               
81-272
               

               
Cow position:
               
chr1:3244233-3244422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
138, 166
               

               
Conread position:
               
82-273
               

               
Cow position:
               
chr1:100512920-100513106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
86-217
               

               
Cow position:
               
chr1:37543759-37543628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-279
               

               
Cow position:
               
chr1:4618716-4618527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
94-249
               

               
Cow position:
               
chr1:86503329-86503171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
94-290
               

               
Cow position:
               
chr1:46795793-46795982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
126, 34
               

               
Conread position:
               
94-305
               

               
Cow position:
               
chr1:90879701-90879497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
129, 49
               

               
Conread position:
               
95-248
               

               
Cow position:
               
chr1:22231684-22231839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
95-249
               

               
Cow position:
               
chr1:33720137-33720293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
95-296
               

               
Cow position:
               
chr1:41022455-41022649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
125, 91
               

               
Conread position:
               
96-283
               

               
Cow position:
               
chr1:7965883-7966066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
127, 106
               

               
Conread position:
               
97-275
               

               
Cow position:
               
chr1:43379324-43379150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
123, 93
               

               
Conread position:
               
97-275
               

               
Cow position:
               
chr1:52509727-52509553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
100-272
               

               
Cow position:
               
chr1:3130508-3130338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
101-283
               

               
Cow position:
               
chr1:71664855-71664671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 152
               

               
Conread position:
               
104-290
               

               
Cow position:
               
chr1:66445006-66445182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
107-239
               

               
Cow position:
               
chr1:10523748-10523881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
113, 68
               

               
Conread position:
               
107-290
               

               
Cow position:
               
chr1:42796925-42797109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 81
               

               
Conread position:
               
108-283
               

               
Cow position:
               
chr1:41953953-41953780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 145
               

               
Conread position:
               
108-290
               

               
Cow position:
               
chr1:47190946-47190767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
112, 138
               

               
Conread position:
               
112-299
               

               
Cow position:
               
chr1:3749528-3749347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 123
               

               
Conread position:
               
114-249
               

               
Cow position:
               
chr1:57395452-57395316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 66
               

               
Conread position:
               
116-249
               

               
Cow position:
               
chr1:55260179-55260045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
116-249
               

               
Cow position:
               
chr1:73398017-73397882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
116-270
               

               
Cow position:
               
chr1:50853965-50854119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 133
               

               
Conread position:
               
116-281
               

               
Cow position:
               
chr1:11107301-11107464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
102, 127
               

               
Conread position:
               
116-296
               

               
Cow position:
               
chr1:31274933-31274749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
119-275
               

               
Cow position:
               
chr1:83246485-83246639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
101, 124
               

               
Conread position:
               
119-287
               

               
Cow position:
               
chr1:73375042-73374870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
119-299
               

               
Cow position:
               
chr1:89213293-89213112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 134
               

               
Conread position:
               
119-311
               

               
Cow position:
               
chr1:65160188-65160376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
124-250
               

               
Cow position:
               
chr1:36625580-36625708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
124-299
               

               
Cow position:
               
chr1:64705964-64706131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 129
               

               
Conread position:
               
129-239
               

               
Cow position:
               
chr1:66693831-66693719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
129-275
               

               
Cow position:
               
chr1:17443954-17444097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
150-296
               

               
Cow position:
               
chr1:36306766-36306911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 101
               
Show alignments to all cow chromosomes.