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Cow genome map

           
Conread name:
           
Tra1-TCH01E040033
        

               
Conread position:
               
2-285
               

               
Cow position:
               
chr11:45282849-45283130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
249, 13
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr11:17036607-17036415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr11:27932187-27932398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 186
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr11:26845672-26845476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:71492931-71492701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
220, 5
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chr11:62789051-62789292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr11:35580180-35580427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
4-151
               

               
Cow position:
               
chr11:41176026-41175880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-151
               

               
Cow position:
               
chr11:70273229-70273375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-155
               

               
Cow position:
               
chr11:49231797-49231946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-156
               

               
Cow position:
               
chr11:55203536-55203386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr11:52983600-52983757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr11:27565259-27565417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chr11:33341223-33341057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr11:49934813-49934641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr11:35874081-35873912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr11:55494601-55494770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr11:56734552-56734724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr11:23128619-23128442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr11:34962988-34963167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr11:42359036-42359217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr11:44636834-44636657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 170
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr11:63482502-63482333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr11:16342307-16342126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr11:65767121-65767303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr11:33345367-33345549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr11:23232592-23232412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr11:71341542-71341356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr11:82107970-82107793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr11:42296694-42296509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr11:40478926-40478741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr11:7590117-7590303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
179, 28
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr11:70086252-70086445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr11:83230473-83230288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr11:47004268-47004457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 141
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr11:69075832-69076024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr11:23586559-23586753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr11:62155551-62155752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 189
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr11:25386988-25387186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr11:69119215-69119407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr11:28644008-28644205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr11:35684571-35684384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr11:36238707-36238898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr11:36658897-36658708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr11:43430533-43430336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr11:48272121-48272318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr11:72333516-72333706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr11:377720-377524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr11:28168501-28168304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr11:40573409-40573217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr11:83687510-83687315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr11:1071169-1070971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr11:35803057-35803252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr11:4653054-4652850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 183
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr11:6835454-6835667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr11:35536511-35536724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr11:36920656-36920428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
89, 179
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr11:35926983-35926760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
217, 97
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr11:17493400-17493632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 102
               

               
Conread position:
               
4-234
               

               
Cow position:
               
chr11:31410960-31410728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 182
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr11:43594976-43594743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
201, 21
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr11:48659855-48660083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 179
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr11:30830692-30830463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
216, 178
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr11:62578725-62578966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
204, 18
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr11:6202370-6202620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr11:30192098-30192342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr11:76652942-76653185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
216, 23
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr11:62239667-62239906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
26, 41
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr11:69015895-69016142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr11:4674521-4674278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr11:32398560-32398807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
176, 96
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr11:33287034-33286789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
216, 23
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr11:41986120-41985882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
214, 26
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr11:84890797-84890562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
30, 125
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:4199196-4199441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 29
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:4637250-4637008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:8525187-8524951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
219, 26
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:13043222-13042981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 35
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:17721881-17721634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 177
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:29960219-29960459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:38334448-38334688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:46998908-46999153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:48295956-48296192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:48474627-48474876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
198, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:52297297-52297056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:55761794-55762024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:63435441-63435689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:65607767-65607524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:72375762-72375499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr11:38670607-38670858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr11:67912229-67911994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr11:84228789-84228555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr11:41313733-41313492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
216, 29
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr11:42160137-42159892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
4-254
               

               
Cow position:
               
chr11:53462867-53463113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
143, 29
               

               
Conread position:
               
4-254
               

               
Cow position:
               
chr11:66572577-66572321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr11:41098-41357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr11:259249-258991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr11:52380950-52380689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr11:40608673-40608406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr11:67600706-67600962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
216, 166
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr11:15772791-15772523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 86
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr11:27248416-27248673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr11:43360859-43360599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr11:49872963-49872702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
170, 95
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr11:30165435-30165697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
216, 18
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr11:48383453-48383716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
160, 21
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr11:38236175-38236432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr11:17860230-17859963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr11:50472241-50472506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 18
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr11:64029338-64029077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr11:81168108-81167841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr11:8545089-8544826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
216, 20
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr11:62813028-62812760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr11:30808678-30808399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
29, 239
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr11:7458360-7458075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr11:25791767-25791496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
216, 18
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr11:26117796-26117542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr11:35347829-35347554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr11:3739876-3740164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
176, 37
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr11:36940672-36940389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr11:40792784-40792487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr11:34646511-34646801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 102
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr11:44031925-44032208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 191
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr11:56288471-56288745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr11:63999166-63998889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
216, 68
               

               
Conread position:
               
4-289
               

               
Cow position:
               
chr11:80923400-80923123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr11:19592067-19591793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
165, 27
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr11:21507927-21508216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr11:24438302-24438016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr11:39060676-39060399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr11:84385712-84385436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 31
               

               
Conread position:
               
4-292
               

               
Cow position:
               
chr11:23272079-23271802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
4-292
               

               
Cow position:
               
chr11:53816782-53817059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
170, 9
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr11:9221804-9221515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr11:53778539-53778828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 27
               

               
Conread position:
               
4-296
               

               
Cow position:
               
chr11:13592660-13592946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 18
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr11:52690598-52690311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
4-305
               

               
Cow position:
               
chr11:31413377-31413674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chr11:6642732-6643057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chr11:35709192-35708988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr11:35213245-35213004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr11:21894232-21893947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
177, 44
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr11:8437765-8437463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
169, 26
               

               
Conread position:
               
6-186
               

               
Cow position:
               
chr11:64351868-64351687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
6-203
               

               
Cow position:
               
chr11:49721827-49722018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr11:49148964-49149212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
6-263
               

               
Cow position:
               
chr11:77319338-77319593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
104, 98
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr11:20761772-20762039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 27
               

               
Conread position:
               
6-284
               

               
Cow position:
               
chr11:26144171-26143894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
214, 40
               

               
Conread position:
               
6-293
               

               
Cow position:
               
chr11:40794424-40794140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
209, 42
               

               
Conread position:
               
7-130
               

               
Cow position:
               
chr11:7297890-7297769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
7-143
               

               
Cow position:
               
chr11:50236052-50235916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
7-168
               

               
Cow position:
               
chr11:7299059-7299220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-168
               

               
Cow position:
               
chr11:18588659-18588500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr11:33526979-33527144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
7-178
               

               
Cow position:
               
chr11:18785945-18785782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
7-178
               

               
Cow position:
               
chr11:73512510-73512348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chr11:80761452-80761280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr11:1157573-1157752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
168, 18
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr11:51196152-51195974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
7-196
               

               
Cow position:
               
chr11:39118679-39118869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 171
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chr11:41293891-41293701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr11:6633632-6633828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr11:48232749-48232942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 170
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr11:62778373-62778560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr11:83033310-83033121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr11:33414164-33414375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr11:30370034-30370255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
213, 85
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr11:56499764-56499991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
211, 31
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr11:83357321-83357549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr11:57724896-57724663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
211, 42
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr11:20684647-20684407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr11:3908685-3908450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
213, 14
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr11:31875017-31875258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr11:45700416-45700655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-247
               

               
Cow position:
               
chr11:4732269-4732509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
211, 20
               

               
Conread position:
               
7-247
               

               
Cow position:
               
chr11:19593743-19593984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
208, 83
               

               
Conread position:
               
7-247
               

               
Cow position:
               
chr11:62482563-62482807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
7-247
               

               
Cow position:
               
chr11:64048332-64048555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr11:30721020-30721266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr11:68112338-68112093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr11:40395364-40395603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr11:51729214-51729441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
213, 26
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr11:66188396-66188154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr11:68909925-68909686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chr11:46747938-46747691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr11:6233953-6233694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
213, 28
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr11:19247273-19247008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
213, 34
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr11:31024881-31024598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
167, 18
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr11:73573573-73573845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
211, 24
               

               
Conread position:
               
7-284
               

               
Cow position:
               
chr11:67931564-67931288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
7-285
               

               
Cow position:
               
chr11:21844208-21843933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
7-286
               

               
Cow position:
               
chr11:29308501-29308783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 243
               

               
Conread position:
               
7-286
               

               
Cow position:
               
chr11:58594461-58594183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
213, 15
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:953282-953563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
213, 15
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:3720180-3720462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
213, 91
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:4323284-4323568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
177, 25
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:23251665-23251399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:36914641-36914363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:36977732-36978010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
211, 24
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:55333838-55334120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
164, 25
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr11:70382765-70382481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
213, 85
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr11:69168509-69168801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 234
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr11:5075301-5075005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
7-311
               

               
Cow position:
               
chr11:8669934-8670244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
8-180
               

               
Cow position:
               
chr11:34113191-34113363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
8-186
               

               
Cow position:
               
chr11:17495817-17495638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr11:17831293-17831110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr11:36848855-36849035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr11:19233025-19232799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
210, 14
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr11:15062372-15062603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
8-236
               

               
Cow position:
               
chr11:61203092-61203320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
200, 17
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chr11:30209895-30209662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr11:61675396-61675624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
212, 12
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr11:7559925-7560168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr11:34144987-34144752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr11:67312698-67312952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 245
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr11:77705683-77705917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
8-250
               

               
Cow position:
               
chr11:53510574-53510327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
212, 93
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr11:17889798-17889538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr11:49152879-49153124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
212, 24
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chr11:23407389-23407649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 175
               

               
Conread position:
               
8-287
               

               
Cow position:
               
chr11:20194502-20194219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
25, 245
               

               
Conread position:
               
9-174
               

               
Cow position:
               
chr11:36986884-36987041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
9-178
               

               
Cow position:
               
chr11:71501203-71501037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr11:35573560-35573373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr11:79019132-79018940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr11:7924662-7924453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr11:63396745-63396971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
211, 117
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr11:87155448-87155674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
211, 16
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr11:66733756-66733996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr11:36981490-36981731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
160, 219
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr11:39462550-39462786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 178
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr11:47837246-47837486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
9-250
               

               
Cow position:
               
chr11:1067514-1067270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
9-270
               

               
Cow position:
               
chr11:37804627-37804368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 246
               

               
Conread position:
               
9-273
               

               
Cow position:
               
chr11:10095274-10095530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
211, 22
               

               
Conread position:
               
9-273
               

               
Cow position:
               
chr11:57503410-57503667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
181, 32
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr11:68913071-68913340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
164, 16
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr11:42016704-42016432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
214, 24
               

               
Conread position:
               
9-297
               

               
Cow position:
               
chr11:48672642-48672926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
210, 22
               

               
Conread position:
               
10-201
               

               
Cow position:
               
chr11:33310901-33311096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
10-206
               

               
Cow position:
               
chr11:37999189-37999388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chr11:71868674-71868455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr11:1147441-1147212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
176, 15
               

               
Conread position:
               
10-246
               

               
Cow position:
               
chr11:9463764-9464001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr11:55636301-55636059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
17, 120
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr11:32198868-32199110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr11:37919115-37918881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
213, 22
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr11:80413083-80412842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
10-250
               

               
Cow position:
               
chr11:64009649-64009894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr11:47639099-47638835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr11:70756410-70756663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
211, 70
               

               
Conread position:
               
10-274
               

               
Cow position:
               
chr11:26067253-26067001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr11:63065588-63065855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
141, 23
               

               
Conread position:
               
10-290
               

               
Cow position:
               
chr11:57608527-57608261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
10-303
               

               
Cow position:
               
chr11:2084071-2084363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr11:63202319-63202085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
11-246
               

               
Cow position:
               
chr11:9234299-9234062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 144
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr11:11994778-11994545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
163, 100
               

               
Conread position:
               
11-272
               

               
Cow position:
               
chr11:59862138-59862397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
11-279
               

               
Cow position:
               
chr11:70459492-70459755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
209, 94
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr11:42884854-42884588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
209, 21
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chr11:62150961-62150783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
12-200
               

               
Cow position:
               
chr11:48248285-48248096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
158, 32
               

               
Conread position:
               
12-285
               

               
Cow position:
               
chr11:19487550-19487277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr11:78381127-78380869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
206, 19
               

               
Conread position:
               
12-291
               

               
Cow position:
               
chr11:44222817-44223089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
13-156
               

               
Cow position:
               
chr11:71482311-71482453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
13-296
               

               
Cow position:
               
chr11:76889980-76890250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
207, 11
               

               
Conread position:
               
13-299
               

               
Cow position:
               
chr11:36182622-36182912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
14-210
               

               
Cow position:
               
chr11:76835697-76835497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
15-249
               

               
Cow position:
               
chr11:62620309-62620543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
15-302
               

               
Cow position:
               
chr11:68555160-68554875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
188, 10
               

               
Conread position:
               
18-272
               

               
Cow position:
               
chr11:75285830-75285570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr11:13499953-13500241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
19-298
               

               
Cow position:
               
chr11:80893720-80893994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
201, 6
               

               
Conread position:
               
20-200
               

               
Cow position:
               
chr11:56290447-56290629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
20-247
               

               
Cow position:
               
chr11:30764430-30764657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
195, 5
               

               
Conread position:
               
20-249
               

               
Cow position:
               
chr11:46746572-46746803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
20-254
               

               
Cow position:
               
chr11:37778893-37778646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 113
               

               
Conread position:
               
20-272
               

               
Cow position:
               
chr11:21885768-21886016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 112
               

               
Conread position:
               
21-195
               

               
Cow position:
               
chr11:68173470-68173645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
21-218
               

               
Cow position:
               
chr11:36297745-36297547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
21-296
               

               
Cow position:
               
chr11:29916481-29916756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
199, 10
               

               
Conread position:
               
22-240
               

               
Cow position:
               
chr11:48233571-48233355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
170, 13
               

               
Conread position:
               
22-240
               

               
Cow position:
               
chr11:75090279-75090058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
22-283
               

               
Cow position:
               
chr11:1380615-1380881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
22-287
               

               
Cow position:
               
chr11:35665624-35665357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr11:35805598-35805867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
22-296
               

               
Cow position:
               
chr11:32868944-32869214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
166, 11
               

               
Conread position:
               
23-283
               

               
Cow position:
               
chr11:71935012-71934750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
187, 8
               

               
Conread position:
               
24-273
               

               
Cow position:
               
chr11:65058678-65058425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
25-240
               

               
Cow position:
               
chr11:22102957-22102740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
25-246
               

               
Cow position:
               
chr11:15287387-15287609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
163, 20
               

               
Conread position:
               
25-249
               

               
Cow position:
               
chr11:18543563-18543354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
25-275
               

               
Cow position:
               
chr11:67345710-67345470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
25-286
               

               
Cow position:
               
chr11:41438243-41437980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
193, 16
               

               
Conread position:
               
25-293
               

               
Cow position:
               
chr11:2788336-2788601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
192, 221
               

               
Conread position:
               
25-293
               

               
Cow position:
               
chr11:64104112-64103847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 192
               

               
Conread position:
               
25-295
               

               
Cow position:
               
chr11:29954314-29954577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
26-271
               

               
Cow position:
               
chr11:71110836-71111083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
26-282
               

               
Cow position:
               
chr11:33349757-33349500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
217, 191
               

               
Conread position:
               
27-193
               

               
Cow position:
               
chr11:897618-897785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
27-200
               

               
Cow position:
               
chr11:62754373-62754202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
28-239
               

               
Cow position:
               
chr11:35109590-35109380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
29-249
               

               
Cow position:
               
chr11:56311649-56311433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
191, 119
               

               
Conread position:
               
29-270
               

               
Cow position:
               
chr11:13940137-13940371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
144, 49
               

               
Conread position:
               
29-283
               

               
Cow position:
               
chr11:18924692-18924948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
145, 155
               

               
Conread position:
               
30-270
               

               
Cow position:
               
chr11:71854331-71854098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
190, 105
               

               
Conread position:
               
32-209
               

               
Cow position:
               
chr11:944803-944976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
32-245
               

               
Cow position:
               
chr11:3405237-3405023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr11:36217748-36217536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
188, 132
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr11:43524558-43524774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr11:81406212-81406001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
32-273
               

               
Cow position:
               
chr11:13864155-13863913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
123, 222
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr11:54742130-54741888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
176, 12
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr11:7247943-7247669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
188, 137
               

               
Conread position:
               
33-170
               

               
Cow position:
               
chr11:77546365-77546503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
33-178
               

               
Cow position:
               
chr11:16320237-16320379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
33-184
               

               
Cow position:
               
chr11:77556048-77556198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
33-200
               

               
Cow position:
               
chr11:50072888-50073055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
33-203
               

               
Cow position:
               
chr11:61137224-61137054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
33-221
               

               
Cow position:
               
chr11:59902842-59903029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 8
               

               
Conread position:
               
33-249
               

               
Cow position:
               
chr11:64101724-64101940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
33-249
               

               
Cow position:
               
chr11:85723649-85723861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
187, 8
               

               
Conread position:
               
33-288
               

               
Cow position:
               
chr11:29659510-29659762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 170
               

               
Conread position:
               
33-293
               

               
Cow position:
               
chr11:65826800-65826547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
76, 71
               

               
Conread position:
               
33-299
               

               
Cow position:
               
chr11:37411577-37411304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
34-170
               

               
Cow position:
               
chr11:48512117-48512251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
34-178
               

               
Cow position:
               
chr11:58022462-58022318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
74, 53
               

               
Conread position:
               
34-178
               

               
Cow position:
               
chr11:84977407-84977262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr11:1362516-1362371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-186
               

               
Cow position:
               
chr11:81931161-81931013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 54
               

               
Conread position:
               
34-202
               

               
Cow position:
               
chr11:37278272-37278104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-218
               

               
Cow position:
               
chr11:18243990-18243811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 75
               

               
Conread position:
               
34-231
               

               
Cow position:
               
chr11:32684579-32684775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
34-235
               

               
Cow position:
               
chr11:52464364-52464558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
183, 59
               

               
Conread position:
               
34-241
               

               
Cow position:
               
chr11:30893746-30893538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
186, 38
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr11:27913237-27913453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
186, 10
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr11:55744419-55744636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr11:56675867-56676099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr11:33639167-33639399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
187, 114
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr11:6245270-6245518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
34-288
               

               
Cow position:
               
chr11:29677153-29677409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
7, 151
               

               
Conread position:
               
34-296
               

               
Cow position:
               
chr11:15369338-15369601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
13, 220
               

               
Conread position:
               
34-301
               

               
Cow position:
               
chr11:5219207-5218952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
184, 15
               

               
Conread position:
               
34-324
               

               
Cow position:
               
chr11:69977923-69978202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
35-168
               

               
Cow position:
               
chr11:34106716-34106584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
35-178
               

               
Cow position:
               
chr11:21910674-21910531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr11:30925109-30925267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr11:3234028-3234191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr11:30888330-30888162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr11:61958791-61958627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr11:81762815-81762984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
35-201
               

               
Cow position:
               
chr11:36635088-36634923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
35-228
               

               
Cow position:
               
chr11:36112376-36112564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
185, 57
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr11:54387859-54388063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
185, 91
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr11:39554245-39554026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr11:66326157-66325944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr11:132377-132162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr11:31525828-31526044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr11:35791869-35791656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 112
               

               
Conread position:
               
35-247
               

               
Cow position:
               
chr11:66289504-66289718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr11:12077133-12076919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
183, 197
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr11:53649421-53649205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 206
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr11:5201699-5201479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
147, 134
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr11:30638997-30638785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
185, 147
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr11:60302007-60301810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
177, 9
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr11:63484899-63485099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
185, 29
               

               
Conread position:
               
35-250
               

               
Cow position:
               
chr11:55972979-55972762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr11:85571852-85571622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
182, 31
               

               
Conread position:
               
35-272
               

               
Cow position:
               
chr11:46329447-46329684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 207
               

               
Conread position:
               
35-279
               

               
Cow position:
               
chr11:19119030-19118782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
173, 79
               

               
Conread position:
               
35-281
               

               
Cow position:
               
chr11:41215685-41215929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
187, 217
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chr11:27907735-27907967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
185, 23
               

               
Conread position:
               
35-286
               

               
Cow position:
               
chr11:37436033-37435786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
185, 19
               

               
Conread position:
               
35-287
               

               
Cow position:
               
chr11:66041237-66041477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
185, 39
               

               
Conread position:
               
35-287
               

               
Cow position:
               
chr11:68401754-68402005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
185, 193
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chr11:40467173-40466906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 127
               

               
Conread position:
               
35-306
               

               
Cow position:
               
chr11:3597070-3597336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
185, 215
               

               
Conread position:
               
35-307
               

               
Cow position:
               
chr11:59024407-59024131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
146, 87
               

               
Conread position:
               
35-340
               

               
Cow position:
               
chr11:81300668-81300366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 122
               

               
Conread position:
               
36-183
               

               
Cow position:
               
chr11:63920100-63919953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-196
               

               
Cow position:
               
chr11:2933097-2933260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
36-200
               

               
Cow position:
               
chr11:15373792-15373959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
36-200
               

               
Cow position:
               
chr11:48649926-48650090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-228
               

               
Cow position:
               
chr11:372751-372559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 107
               

               
Conread position:
               
36-228
               

               
Cow position:
               
chr11:35669998-35669811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
184, 103
               

               
Conread position:
               
36-235
               

               
Cow position:
               
chr11:82289536-82289741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
161, 56
               

               
Conread position:
               
36-248
               

               
Cow position:
               
chr11:8461958-8462171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
184, 128
               

               
Conread position:
               
36-248
               

               
Cow position:
               
chr11:8684128-8683912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
36-249
               

               
Cow position:
               
chr11:15382549-15382328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
36-271
               

               
Cow position:
               
chr11:70483897-70483666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
184, 15
               

               
Conread position:
               
36-283
               

               
Cow position:
               
chr11:13067712-13067460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
36-283
               

               
Cow position:
               
chr11:20562040-20561794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 95
               

               
Conread position:
               
36-290
               

               
Cow position:
               
chr11:70950824-70951080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
182, 136
               

               
Conread position:
               
36-293
               

               
Cow position:
               
chr11:31417374-31417635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 216
               

               
Conread position:
               
36-296
               

               
Cow position:
               
chr11:34896515-34896781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
182, 231
               

               
Conread position:
               
36-298
               

               
Cow position:
               
chr11:81848841-81849105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
184, 195
               

               
Conread position:
               
37-179
               

               
Cow position:
               
chr11:77118659-77118796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
37-196
               

               
Cow position:
               
chr11:34692808-34692967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-201
               

               
Cow position:
               
chr11:29983762-29983600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
37-235
               

               
Cow position:
               
chr11:35562674-35562874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
37-246
               

               
Cow position:
               
chr11:32595412-32595623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
37-248
               

               
Cow position:
               
chr11:29786544-29786327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr11:38211600-38211808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
175, 143
               

               
Conread position:
               
37-270
               

               
Cow position:
               
chr11:62811252-62811480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
183, 103
               

               
Conread position:
               
37-283
               

               
Cow position:
               
chr11:25698333-25698082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
37-290
               

               
Cow position:
               
chr11:64077551-64077298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
38-180
               

               
Cow position:
               
chr11:17278716-17278578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
38-228
               

               
Cow position:
               
chr11:53853044-53853236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
39-236
               

               
Cow position:
               
chr11:34136200-34136395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
39-248
               

               
Cow position:
               
chr11:34616215-34616427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
40-179
               

               
Cow position:
               
chr11:18587638-18587499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
40-200
               

               
Cow position:
               
chr11:54334286-54334446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
40-235
               

               
Cow position:
               
chr11:3714783-3714975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
180, 41
               

               
Conread position:
               
40-244
               

               
Cow position:
               
chr11:3702908-3703114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
40-246
               

               
Cow position:
               
chr11:78544241-78544449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
40-248
               

               
Cow position:
               
chr11:62889936-62889726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
40-249
               

               
Cow position:
               
chr11:41213000-41213219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
40-249
               

               
Cow position:
               
chr11:73354102-73353900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
180, 142
               

               
Conread position:
               
40-263
               

               
Cow position:
               
chr11:78820112-78820331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr11:28078461-28078691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
40-287
               

               
Cow position:
               
chr11:68883676-68883921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
178, 213
               

               
Conread position:
               
41-166
               

               
Cow position:
               
chr11:56654514-56654639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
41-179
               

               
Cow position:
               
chr11:29946955-29946817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr11:56575805-56575645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 121
               

               
Conread position:
               
41-200
               

               
Cow position:
               
chr11:63909705-63909549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr11:45849541-45849362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
41-235
               

               
Cow position:
               
chr11:4392395-4392193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
41-249
               

               
Cow position:
               
chr11:45742336-45742538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
41-269
               

               
Cow position:
               
chr11:35352080-35351850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
41-285
               

               
Cow position:
               
chr11:40459066-40459309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
117, 196
               

               
Conread position:
               
42-249
               

               
Cow position:
               
chr11:39855054-39854855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
176, 50
               

               
Conread position:
               
42-249
               

               
Cow position:
               
chr11:62742683-62742481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
178, 55
               

               
Conread position:
               
42-272
               

               
Cow position:
               
chr11:36520834-36521066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
73, 137
               

               
Conread position:
               
42-288
               

               
Cow position:
               
chr11:7874098-7874345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
181, 211
               

               
Conread position:
               
42-299
               

               
Cow position:
               
chr11:5231693-5231424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
43-247
               

               
Cow position:
               
chr11:3780457-3780250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
44-240
               

               
Cow position:
               
chr11:63695177-63695375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
44-264
               

               
Cow position:
               
chr11:63975091-63975312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
176, 209
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr11:74427639-74427877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
44-293
               

               
Cow position:
               
chr11:17990275-17990026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
153, 75
               

               
Conread position:
               
45-199
               

               
Cow position:
               
chr11:53717844-53717691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
45-249
               

               
Cow position:
               
chr11:26633051-26632846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
173, 194
               

               
Conread position:
               
46-201
               

               
Cow position:
               
chr11:58173589-58173743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
46-207
               

               
Cow position:
               
chr11:58938781-58938622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
48-200
               

               
Cow position:
               
chr11:5789935-5789782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
48-270
               

               
Cow position:
               
chr11:32260500-32260715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
164, 29
               

               
Conread position:
               
48-282
               

               
Cow position:
               
chr11:28675042-28675272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 79
               

               
Conread position:
               
49-281
               

               
Cow position:
               
chr11:69417370-69417603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
171, 45
               

               
Conread position:
               
49-303
               

               
Cow position:
               
chr11:66939626-66939376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
169, 204
               

               
Conread position:
               
50-218
               

               
Cow position:
               
chr11:2344218-2344386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 137
               

               
Conread position:
               
51-248
               

               
Cow position:
               
chr11:37514524-37514723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
51-270
               

               
Cow position:
               
chr11:34968645-34968429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
172, 76
               

               
Conread position:
               
52-201
               

               
Cow position:
               
chr11:62168361-62168213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr11:64408946-64409133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
168, 40
               

               
Conread position:
               
52-257
               

               
Cow position:
               
chr11:21173464-21173262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
168, 21
               

               
Conread position:
               
52-276
               

               
Cow position:
               
chr11:51687761-51687546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
52-285
               

               
Cow position:
               
chr11:31537470-31537250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
125, 64
               

               
Conread position:
               
52-293
               

               
Cow position:
               
chr11:18509061-18508816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
54-293
               

               
Cow position:
               
chr11:19739424-19739181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
164, 235
               

               
Conread position:
               
55-283
               

               
Cow position:
               
chr11:70458014-70458241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
55, 113
               

               
Conread position:
               
55-284
               

               
Cow position:
               
chr11:20205879-20205662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
55-287
               

               
Cow position:
               
chr11:45350539-45350304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
56-250
               

               
Cow position:
               
chr11:60486446-60486248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 175
               

               
Conread position:
               
57-249
               

               
Cow position:
               
chr11:32782909-32782707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
58-271
               

               
Cow position:
               
chr11:47784750-47784965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
123, 199
               

               
Conread position:
               
59-252
               

               
Cow position:
               
chr11:39057569-39057764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
59-279
               

               
Cow position:
               
chr11:35238777-35239002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
60-249
               

               
Cow position:
               
chr11:25783690-25783882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
62-180
               

               
Cow position:
               
chr11:15683000-15682882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
62-296
               

               
Cow position:
               
chr11:46884353-46884590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
62-299
               

               
Cow position:
               
chr11:18119481-18119714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
62-308
               

               
Cow position:
               
chr11:42084696-42084451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 192
               

               
Conread position:
               
62-311
               

               
Cow position:
               
chr11:17517378-17517630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
124, 179
               

               
Conread position:
               
64-201
               

               
Cow position:
               
chr11:70517612-70517476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
64-249
               

               
Cow position:
               
chr11:25968869-25968686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
156, 31
               

               
Conread position:
               
64-298
               

               
Cow position:
               
chr11:72791756-72791519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
156, 10
               

               
Conread position:
               
66-198
               

               
Cow position:
               
chr11:62808522-62808393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
66-228
               

               
Cow position:
               
chr11:29482452-29482286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
66-270
               

               
Cow position:
               
chr11:36092933-36092735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
66-294
               

               
Cow position:
               
chr11:36361659-36361433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
67-200
               

               
Cow position:
               
chr11:37982593-37982460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-240
               

               
Cow position:
               
chr11:17807979-17807803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
67-274
               

               
Cow position:
               
chr11:20234669-20234874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
104, 94
               

               
Conread position:
               
68-235
               

               
Cow position:
               
chr11:18792082-18791910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
68-235
               

               
Cow position:
               
chr11:35139893-35140063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
68-246
               

               
Cow position:
               
chr11:66099877-66099693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
68-248
               

               
Cow position:
               
chr11:60516547-60516367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
146, 38
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr11:68326878-68326695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
68-274
               

               
Cow position:
               
chr11:48315411-48315208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
155, 136
               

               
Conread position:
               
68-287
               

               
Cow position:
               
chr11:21124621-21124409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
152, 24
               

               
Conread position:
               
68-291
               

               
Cow position:
               
chr11:37100183-37099967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 32
               

               
Conread position:
               
68-297
               

               
Cow position:
               
chr11:21830224-21830000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
152, 103
               

               
Conread position:
               
69-249
               

               
Cow position:
               
chr11:49396539-49396359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
156, 115
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr11:20117060-20117274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
69-285
               

               
Cow position:
               
chr11:35183002-35182780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
70-200
               

               
Cow position:
               
chr11:70709771-70709905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
70-273
               

               
Cow position:
               
chr11:25603935-25604140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 187
               

               
Conread position:
               
70-277
               

               
Cow position:
               
chr11:60296718-60296934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
70-292
               

               
Cow position:
               
chr11:15366985-15366772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
148, 117
               

               
Conread position:
               
70-305
               

               
Cow position:
               
chr11:87172089-87171857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 132
               

               
Conread position:
               
71-235
               

               
Cow position:
               
chr11:63849271-63849105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
71-249
               

               
Cow position:
               
chr11:47411830-47412009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
71-257
               

               
Cow position:
               
chr11:27760506-27760692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
156, 181
               

               
Conread position:
               
71-293
               

               
Cow position:
               
chr11:6094414-6094196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 128
               

               
Conread position:
               
72-202
               

               
Cow position:
               
chr11:32615725-32615856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 34
               

               
Conread position:
               
72-249
               

               
Cow position:
               
chr11:19549474-19549643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
145, 20
               

               
Conread position:
               
72-249
               

               
Cow position:
               
chr11:49207700-49207878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
148, 34
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr11:12555316-12555098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
148, 173
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr11:41980215-41979999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 169
               

               
Conread position:
               
73-356
               

               
Cow position:
               
chr11:64781077-64781360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
147, 173
               

               
Conread position:
               
74-249
               

               
Cow position:
               
chr11:5176388-5176214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
75-246
               

               
Cow position:
               
chr11:42155217-42155390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
75-287
               

               
Cow position:
               
chr11:36917784-36917567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
111, 73
               

               
Conread position:
               
76-218
               

               
Cow position:
               
chr11:79869319-79869464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
76-270
               

               
Cow position:
               
chr11:36300584-36300400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 23
               

               
Conread position:
               
76-296
               

               
Cow position:
               
chr11:32653282-32653502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 175
               

               
Conread position:
               
77-214
               

               
Cow position:
               
chr11:69624577-69624441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
77-217
               

               
Cow position:
               
chr11:81614519-81614379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
78-249
               

               
Cow position:
               
chr11:60720460-60720287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
78-255
               

               
Cow position:
               
chr11:67538122-67537942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
93, 79
               

               
Conread position:
               
78-256
               

               
Cow position:
               
chr11:2835854-2836034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
78-280
               

               
Cow position:
               
chr11:63499131-63498937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
142, 22
               

               
Conread position:
               
78-287
               

               
Cow position:
               
chr11:42064229-42064023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
93, 72
               

               
Conread position:
               
78-290
               

               
Cow position:
               
chr11:33368078-33368275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
78-295
               

               
Cow position:
               
chr11:57767186-57767399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
79-245
               

               
Cow position:
               
chr11:4363915-4363750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
141, 27
               

               
Conread position:
               
79-301
               

               
Cow position:
               
chr11:79666265-79666049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
107, 126
               

               
Conread position:
               
81-248
               

               
Cow position:
               
chr11:76248048-76248212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 82
               

               
Conread position:
               
81-277
               

               
Cow position:
               
chr11:30322494-30322303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
131, 93
               

               
Conread position:
               
81-316
               

               
Cow position:
               
chr11:6320134-6319894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
137, 172
               

               
Conread position:
               
82-249
               

               
Cow position:
               
chr11:80370114-80370281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 25
               

               
Conread position:
               
84-272
               

               
Cow position:
               
chr11:70600827-70600641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 119
               

               
Conread position:
               
84-274
               

               
Cow position:
               
chr11:41278187-41278375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
85-290
               

               
Cow position:
               
chr11:33369151-33369362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
87-285
               

               
Cow position:
               
chr11:26442500-26442303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
130, 166
               

               
Conread position:
               
90-290
               

               
Cow position:
               
chr11:26057643-26057441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 169
               

               
Conread position:
               
92-278
               

               
Cow position:
               
chr11:32108679-32108496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
129, 82
               

               
Conread position:
               
92-329
               

               
Cow position:
               
chr11:35924070-35924306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 161
               

               
Conread position:
               
94-249
               

               
Cow position:
               
chr11:49486790-49486956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
94-249
               

               
Cow position:
               
chr11:68570369-68570214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
118, 86
               

               
Conread position:
               
94-290
               

               
Cow position:
               
chr11:7652055-7651859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 169
               

               
Conread position:
               
95-296
               

               
Cow position:
               
chr11:63407708-63407902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
96-252
               

               
Cow position:
               
chr11:86664768-86664611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
122, 38
               

               
Conread position:
               
96-270
               

               
Cow position:
               
chr11:35733070-35732894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
96-296
               

               
Cow position:
               
chr11:32800639-32800840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 157
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr11:83028007-83028199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 78
               

               
Conread position:
               
100-270
               

               
Cow position:
               
chr11:76896357-76896189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
118, 146
               

               
Conread position:
               
101-249
               

               
Cow position:
               
chr11:78672689-78672838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
118, 97
               

               
Conread position:
               
101-259
               

               
Cow position:
               
chr11:63475654-63475495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
119, 153
               

               
Conread position:
               
101-276
               

               
Cow position:
               
chr11:5559300-5559473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
122, 146
               

               
Conread position:
               
107-268
               

               
Cow position:
               
chr11:44176620-44176775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
107-270
               

               
Cow position:
               
chr11:63849927-63849766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
113, 144
               

               
Conread position:
               
107-271
               

               
Cow position:
               
chr11:46010229-46010074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr11:71303603-71303776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 73
               

               
Conread position:
               
107-286
               

               
Cow position:
               
chr11:46314035-46314213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 88
               

               
Conread position:
               
107-296
               

               
Cow position:
               
chr11:67208277-67208457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
109-249
               

               
Cow position:
               
chr11:63695819-63695672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
111-273
               

               
Cow position:
               
chr11:51683244-51683403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
112-269
               

               
Cow position:
               
chr11:17369560-17369709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 70
               

               
Conread position:
               
112-277
               

               
Cow position:
               
chr11:9691034-9691203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
90, 145
               

               
Conread position:
               
112-312
               

               
Cow position:
               
chr11:33271460-33271649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
118-249
               

               
Cow position:
               
chr11:65436256-65436389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
118-272
               

               
Cow position:
               
chr11:68592052-68592205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 129
               

               
Conread position:
               
121-249
               

               
Cow position:
               
chr11:38657145-38657015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
124-249
               

               
Cow position:
               
chr11:899474-899603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
131-276
               

               
Cow position:
               
chr11:53460745-53460891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 44
               

               
Conread position:
               
132-299
               

               
Cow position:
               
chr11:80695193-80695031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 121
               
Show alignments to all cow chromosomes.