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Cow genome map

           
Conread name:
           
Tra1-TCH01E040033
        

               
Conread position:
               
2-276
               

               
Cow position:
               
chr9:45285437-45285716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 258
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr9:8288706-8288512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr9:3356667-3356911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 19
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr9:34024790-34024545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
4-129
               

               
Cow position:
               
chr9:41789372-41789250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-150
               

               
Cow position:
               
chr9:6089180-6089033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr9:40776885-40776729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr9:19493376-19493541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chr9:5509811-5509650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr9:45756454-45756280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr9:33697117-33696952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr9:43443889-43443720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr9:55321729-55321553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr9:63745898-63745730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr9:6851981-6852153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr9:6952195-6952015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 100
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr9:55084210-55084387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr9:62459456-62459281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr9:5763544-5763718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr9:28379056-28378876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr9:42445892-42446076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 172
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr9:5245949-5245754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr9:6596147-6596328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr9:26434969-26435156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr9:28354608-28354418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr9:30652617-30652806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr9:11313424-11313614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
139, 31
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr9:21888254-21888071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr9:56011586-56011399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr9:8534601-8534798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr9:18217012-18217201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr9:43342417-43342228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr9:8338116-8337923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr9:1973029-1972842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr9:3774248-3774058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
186, 29
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr9:4267896-4268088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 8
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr9:9461568-9461761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr9:15225211-15225404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
193, 31
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr9:17411104-17411300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr9:38645255-38645451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr9:39681427-39681233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr9:54528599-54528406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
188, 28
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr9:62668341-62668143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr9:47445940-47446142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
176, 11
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr9:48107029-48107235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr9:47906189-47906428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr9:52407254-52407030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
214, 149
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr9:16121257-16121033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
216, 27
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr9:33119798-33120036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr9:38624537-38624772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
216, 37
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr9:647864-647622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
211, 9
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr9:28263605-28263365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr9:48730516-48730276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr9:6933986-6934234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr9:25400109-25400340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr9:30402333-30402582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr9:38941344-38941590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
182, 37
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr9:61739013-61738768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 123
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:3186215-3185975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
216, 18
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:4630192-4629955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
214, 37
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:6189284-6189517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
214, 29
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:9723796-9724033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
216, 20
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:11123395-11123634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
216, 110
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:12225890-12226139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
172, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:13169574-13169819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
166, 40
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:15805833-15806080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:17872019-17872261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 204
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:22443540-22443777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:26403872-26403641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
216, 34
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:28726633-28726883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:29185045-29185294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:29819803-29819572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
216, 27
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:31626238-31625977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:34286890-34286644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
37, 181
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:37016984-37016745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:41283101-41282858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 27
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:42497913-42497674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:49764744-49764491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:55287804-55288043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
214, 31
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr9:58979485-58979251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 29
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr9:24652499-24652244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr9:26086151-26085902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr9:40215329-40215092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
160, 21
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr9:33940692-33940440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr9:19903168-19902935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
216, 31
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr9:27279396-27279149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr9:8834042-8834289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr9:34957965-34958213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 171
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr9:9552180-9551928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
219, 164
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr9:9753306-9753568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
170, 18
               

               
Conread position:
               
4-266
               

               
Cow position:
               
chr9:22151995-22152249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr9:26279084-26279343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
216, 17
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr9:39011382-39011637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
216, 27
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr9:11303992-11304261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
170, 28
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr9:54681594-54681345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
250, 27
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr9:51720815-51721064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
247, 26
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr9:23788525-23788246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
178, 34
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr9:28747435-28747694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr9:32676765-32676504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr9:15215598-15215869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
216, 37
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr9:40005563-40005303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
219, 29
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr9:47500122-47500375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
264, 153
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr9:8716681-8716961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 32
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr9:36410270-36410526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
216, 29
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr9:9311948-9311669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr9:60394963-60395232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr9:20755668-20755947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr9:31347043-31346757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr9:32669860-32670130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 38
               

               
Conread position:
               
4-285
               

               
Cow position:
               
chr9:37199211-37198936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
216, 20
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr9:17840587-17840867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 171
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr9:34902021-34902286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
216, 34
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr9:37934149-37934428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
4-289
               

               
Cow position:
               
chr9:26057354-26057620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
215, 37
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr9:53762786-53762508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 180
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr9:8723884-8723594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
4-303
               

               
Cow position:
               
chr9:5433725-5433441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 178
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr9:6954159-6954459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
5-183
               

               
Cow position:
               
chr9:54615214-54615389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr9:9686327-9686519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr9:5163897-5164132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
213, 101
               

               
Conread position:
               
5-253
               

               
Cow position:
               
chr9:52267670-52267920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
177, 20
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chr9:48628117-48627849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr9:21460064-21460326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr9:8628829-8629087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
218, 95
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr9:55256464-55256732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr9:33584596-33584875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chr9:21080648-21080492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
6-178
               

               
Cow position:
               
chr9:28754905-28754735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chr9:32981986-32982180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr9:35652381-35652583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
16, 124
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr9:62007255-62007012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 212
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr9:34278969-34279213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
7-193
               

               
Cow position:
               
chr9:11168814-11168632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
7-195
               

               
Cow position:
               
chr9:45171134-45171326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
7-196
               

               
Cow position:
               
chr9:50139371-50139183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr9:33237475-33237279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
7-218
               

               
Cow position:
               
chr9:50125509-50125720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
7-230
               

               
Cow position:
               
chr9:35930350-35930573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
213, 13
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr9:9815500-9815270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr9:64559800-64560028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
175, 25
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr9:1846895-1847128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
213, 20
               

               
Conread position:
               
7-240
               

               
Cow position:
               
chr9:6338880-6338645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 99
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr9:33542141-33541905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr9:25964746-25964990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
172, 153
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr9:12398684-12398444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr9:22638188-22637948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
211, 18
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr9:56262024-56262260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
213, 14
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr9:28917395-28917638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr9:56065640-56065412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
213, 31
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr9:34284036-34283793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr9:35547356-35547094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 240
               

               
Conread position:
               
7-271
               

               
Cow position:
               
chr9:27356010-27355746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
7-271
               

               
Cow position:
               
chr9:27358796-27358532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chr9:8547898-8547629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr9:3573553-3573275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 120
               

               
Conread position:
               
7-284
               

               
Cow position:
               
chr9:21030393-21030113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
7-286
               

               
Cow position:
               
chr9:4512573-4512288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr9:40543239-40543511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
213, 15
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr9:49863466-49863749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
167, 18
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr9:31557642-31557926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr9:44396743-44396463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 18
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr9:29091879-29091565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
7-312
               

               
Cow position:
               
chr9:18426002-18425697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 235
               

               
Conread position:
               
8-163
               

               
Cow position:
               
chr9:27029620-27029774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr9:7805879-7806065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr9:9443520-9443708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
177, 24
               

               
Conread position:
               
8-207
               

               
Cow position:
               
chr9:35105706-35105903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr9:47590895-47591131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr9:8998440-8998199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 183
               

               
Conread position:
               
8-258
               

               
Cow position:
               
chr9:20901041-20901282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr9:64064273-64064535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 196
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr9:58662322-58662064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
214, 23
               

               
Conread position:
               
8-293
               

               
Cow position:
               
chr9:12428424-12428697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
210, 66
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr9:16217057-16216776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
8-299
               

               
Cow position:
               
chr9:52754773-52755053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
212, 17
               

               
Conread position:
               
8-305
               

               
Cow position:
               
chr9:61544733-61544455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
276, 14
               

               
Conread position:
               
9-193
               

               
Cow position:
               
chr9:41781737-41781555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
9-218
               

               
Cow position:
               
chr9:824045-823838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr9:53257969-53258209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr9:12281056-12280819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
208, 171
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr9:63153735-63153968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
166, 16
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chr9:63170052-63169801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
168, 13
               

               
Conread position:
               
9-269
               

               
Cow position:
               
chr9:7363107-7362833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
156, 24
               

               
Conread position:
               
9-306
               

               
Cow position:
               
chr9:34410313-34410600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
211, 16
               

               
Conread position:
               
10-180
               

               
Cow position:
               
chr9:43871060-43870889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
10-202
               

               
Cow position:
               
chr9:5594583-5594394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
165, 21
               

               
Conread position:
               
10-233
               

               
Cow position:
               
chr9:5649891-5650104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr9:5110942-5110702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr9:25804914-25804674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr9:48564165-48563924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
10-272
               

               
Cow position:
               
chr9:52511196-52510942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
164, 15
               

               
Conread position:
               
10-278
               

               
Cow position:
               
chr9:1877926-1878182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
208, 22
               

               
Conread position:
               
10-282
               

               
Cow position:
               
chr9:34344691-34344426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
213, 15
               

               
Conread position:
               
11-180
               

               
Cow position:
               
chr9:23797319-23797150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
11-186
               

               
Cow position:
               
chr9:60110332-60110158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
11-192
               

               
Cow position:
               
chr9:17518408-17518585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
11-200
               

               
Cow position:
               
chr9:50543342-50543533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 152
               

               
Conread position:
               
11-230
               

               
Cow position:
               
chr9:1729589-1729809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
26, 213
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chr9:20416426-20416658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
11-253
               

               
Cow position:
               
chr9:37139126-37138881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
11-274
               

               
Cow position:
               
chr9:51566412-51566673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 242
               

               
Conread position:
               
11-296
               

               
Cow position:
               
chr9:26477296-26477015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 29
               

               
Conread position:
               
11-298
               

               
Cow position:
               
chr9:42062184-42061891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
57, 247
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chr9:64050480-64050662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
12-200
               

               
Cow position:
               
chr9:28686468-28686281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
172, 22
               

               
Conread position:
               
12-233
               

               
Cow position:
               
chr9:5327337-5327124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
208, 19
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chr9:16300484-16300720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
12-245
               

               
Cow position:
               
chr9:63691822-63691590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
208, 13
               

               
Conread position:
               
12-270
               

               
Cow position:
               
chr9:19067864-19067598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
160, 89
               

               
Conread position:
               
13-200
               

               
Cow position:
               
chr9:11319553-11319740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-200
               

               
Cow position:
               
chr9:22696300-22696117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
14-240
               

               
Cow position:
               
chr9:52030554-52030331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
206, 11
               

               
Conread position:
               
14-249
               

               
Cow position:
               
chr9:29194944-29195186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
14-249
               

               
Cow position:
               
chr9:35167253-35167015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
15-249
               

               
Cow position:
               
chr9:50977165-50977410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
16-296
               

               
Cow position:
               
chr9:45253837-45254128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
161, 240
               

               
Conread position:
               
18-184
               

               
Cow position:
               
chr9:19714155-19713990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
18-296
               

               
Cow position:
               
chr9:12337982-12337701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 187
               

               
Conread position:
               
19-246
               

               
Cow position:
               
chr9:54664925-54664697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
20-210
               

               
Cow position:
               
chr9:9316529-9316339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
20-296
               

               
Cow position:
               
chr9:44584669-44584404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
7, 156
               

               
Conread position:
               
22-181
               

               
Cow position:
               
chr9:10650230-10650386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
25-190
               

               
Cow position:
               
chr9:31098815-31098981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
25-246
               

               
Cow position:
               
chr9:13994231-13994008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
146, 23
               

               
Conread position:
               
25-246
               

               
Cow position:
               
chr9:17276821-17277043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
195, 10
               

               
Conread position:
               
25-248
               

               
Cow position:
               
chr9:54986085-54986314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
25-255
               

               
Cow position:
               
chr9:41394580-41394810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
195, 15
               

               
Conread position:
               
25-269
               

               
Cow position:
               
chr9:26102792-26102560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
195, 65
               

               
Conread position:
               
25-283
               

               
Cow position:
               
chr9:32387915-32388176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
190, 119
               

               
Conread position:
               
25-299
               

               
Cow position:
               
chr9:59053735-59053459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
193, 227
               

               
Conread position:
               
26-311
               

               
Cow position:
               
chr9:38184398-38184677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
194, 149
               

               
Conread position:
               
27-249
               

               
Cow position:
               
chr9:5342180-5342400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
29-253
               

               
Cow position:
               
chr9:31359668-31359446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
29-272
               

               
Cow position:
               
chr9:33598052-33597800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
16, 229
               

               
Conread position:
               
30-181
               

               
Cow position:
               
chr9:50076126-50075977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
30-286
               

               
Cow position:
               
chr9:20406711-20406468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
32-195
               

               
Cow position:
               
chr9:5666128-5665967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
32-202
               

               
Cow position:
               
chr9:788881-788711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
32-206
               

               
Cow position:
               
chr9:61493093-61492920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr9:6340622-6340839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
32-270
               

               
Cow position:
               
chr9:52638106-52638341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
191, 12
               

               
Conread position:
               
32-290
               

               
Cow position:
               
chr9:28156755-28156509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
184, 115
               

               
Conread position:
               
32-304
               

               
Cow position:
               
chr9:12681176-12680903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
188, 80
               

               
Conread position:
               
33-186
               

               
Cow position:
               
chr9:31772017-31772169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
33-198
               

               
Cow position:
               
chr9:53413177-53413342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
33-200
               

               
Cow position:
               
chr9:31814324-31814492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
33-202
               

               
Cow position:
               
chr9:18827993-18828162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
33-245
               

               
Cow position:
               
chr9:43623328-43623115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
187, 8
               

               
Conread position:
               
33-245
               

               
Cow position:
               
chr9:46930518-46930310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
187, 13
               

               
Conread position:
               
33-245
               

               
Cow position:
               
chr9:55494925-55495139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
33-271
               

               
Cow position:
               
chr9:48017042-48016817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
33-287
               

               
Cow position:
               
chr9:56827541-56827283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
33-287
               

               
Cow position:
               
chr9:62859743-62859493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
190, 51
               

               
Conread position:
               
33-294
               

               
Cow position:
               
chr9:47517260-47517001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 70
               

               
Conread position:
               
33-300
               

               
Cow position:
               
chr9:35844950-35845225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 225
               

               
Conread position:
               
33-301
               

               
Cow position:
               
chr9:7409827-7409578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr9:64155791-64155936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-197
               

               
Cow position:
               
chr9:52598661-52598825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr9:35889172-35889336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
34-246
               

               
Cow position:
               
chr9:12094542-12094327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr9:18252862-18253074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 7
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr9:20322039-20322246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr9:31513879-31514089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
186, 72
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr9:54677317-54677103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 32
               

               
Conread position:
               
34-266
               

               
Cow position:
               
chr9:63784854-63785076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
186, 148
               

               
Conread position:
               
34-276
               

               
Cow position:
               
chr9:39709916-39709676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
34-296
               

               
Cow position:
               
chr9:13945666-13945399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
34-299
               

               
Cow position:
               
chr9:50310706-50310969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
184, 58
               

               
Conread position:
               
34-303
               

               
Cow position:
               
chr9:48118630-48118881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
34-313
               

               
Cow position:
               
chr9:23970836-23971107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 151
               

               
Conread position:
               
35-188
               

               
Cow position:
               
chr9:623411-623261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr9:39758577-39758412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
35-230
               

               
Cow position:
               
chr9:33043481-33043675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
176, 107
               

               
Conread position:
               
35-233
               

               
Cow position:
               
chr9:26507183-26506976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
35-234
               

               
Cow position:
               
chr9:52505241-52505448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
35-235
               

               
Cow position:
               
chr9:48451770-48451569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
185, 125
               

               
Conread position:
               
35-240
               

               
Cow position:
               
chr9:54183461-54183668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
130, 112
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr9:41964676-41964883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
188, 94
               

               
Conread position:
               
35-247
               

               
Cow position:
               
chr9:58672500-58672286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr9:62471739-62471524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr9:4341100-4341310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 71
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr9:9595891-9596104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 147
               

               
Conread position:
               
35-249
               

               
Cow position:
               
chr9:58368938-58369147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
147, 61
               

               
Conread position:
               
35-257
               

               
Cow position:
               
chr9:18215851-18216075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
139, 92
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr9:33347431-33347652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
35-284
               

               
Cow position:
               
chr9:17677051-17677304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
35-286
               

               
Cow position:
               
chr9:13743870-13744121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 214
               

               
Conread position:
               
35-287
               

               
Cow position:
               
chr9:44709884-44709645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
185, 51
               

               
Conread position:
               
35-289
               

               
Cow position:
               
chr9:12786414-12786666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
185, 210
               

               
Conread position:
               
35-290
               

               
Cow position:
               
chr9:35728975-35729228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
185, 43
               

               
Conread position:
               
35-298
               

               
Cow position:
               
chr9:45749500-45749235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 147
               

               
Conread position:
               
36-197
               

               
Cow position:
               
chr9:64550653-64550491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
36-200
               

               
Cow position:
               
chr9:8562878-8562716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
36-200
               

               
Cow position:
               
chr9:50080982-50081146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-221
               

               
Cow position:
               
chr9:22433871-22434055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
36-231
               

               
Cow position:
               
chr9:52258009-52258202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
162, 65
               

               
Conread position:
               
36-247
               

               
Cow position:
               
chr9:55529853-55529651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
184, 58
               

               
Conread position:
               
36-249
               

               
Cow position:
               
chr9:10010868-10010658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
187, 91
               

               
Conread position:
               
36-249
               

               
Cow position:
               
chr9:52131069-52130858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
36-274
               

               
Cow position:
               
chr9:22408815-22408575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
36-282
               

               
Cow position:
               
chr9:32348756-32349006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
151, 215
               

               
Conread position:
               
36-288
               

               
Cow position:
               
chr9:23955922-23956166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
184, 139
               

               
Conread position:
               
36-290
               

               
Cow position:
               
chr9:6840051-6839801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
186, 144
               

               
Conread position:
               
36-290
               

               
Cow position:
               
chr9:40303075-40303326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
36-296
               

               
Cow position:
               
chr9:36857643-36857377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
160, 216
               

               
Conread position:
               
36-297
               

               
Cow position:
               
chr9:15983014-15983278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
184, 257
               

               
Conread position:
               
36-298
               

               
Cow position:
               
chr9:52689553-52689813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
184, 210
               

               
Conread position:
               
36-303
               

               
Cow position:
               
chr9:8992121-8992387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
116, 156
               

               
Conread position:
               
37-245
               

               
Cow position:
               
chr9:63853266-63853057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
182, 14
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr9:19034403-19034200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
183, 35
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr9:46981168-46981376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
37-253
               

               
Cow position:
               
chr9:57274277-57274060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
37-266
               

               
Cow position:
               
chr9:7611735-7611954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
183, 79
               

               
Conread position:
               
37-272
               

               
Cow position:
               
chr9:64629308-64629537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
183, 58
               

               
Conread position:
               
37-273
               

               
Cow position:
               
chr9:52763703-52763932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
186, 135
               

               
Conread position:
               
37-290
               

               
Cow position:
               
chr9:35049530-35049285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
183, 80
               

               
Conread position:
               
37-290
               

               
Cow position:
               
chr9:44758875-44759116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
183, 25
               

               
Conread position:
               
38-242
               

               
Cow position:
               
chr9:17711978-17711772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
38-249
               

               
Cow position:
               
chr9:38846281-38846495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 54
               

               
Conread position:
               
38-274
               

               
Cow position:
               
chr9:34374869-34375107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
39-249
               

               
Cow position:
               
chr9:7859582-7859792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 59
               

               
Conread position:
               
39-249
               

               
Cow position:
               
chr9:14974864-14975083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
40-177
               

               
Cow position:
               
chr9:13846073-13846210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
40-249
               

               
Cow position:
               
chr9:50202627-50202400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
40-250
               

               
Cow position:
               
chr9:32307179-32307389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
178, 50
               

               
Conread position:
               
40-250
               

               
Cow position:
               
chr9:55438381-55438587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 146
               

               
Conread position:
               
40-272
               

               
Cow position:
               
chr9:14738303-14738079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
180, 149
               

               
Conread position:
               
40-273
               

               
Cow position:
               
chr9:57131549-57131324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 122
               

               
Conread position:
               
40-282
               

               
Cow position:
               
chr9:31216138-31215891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 71
               

               
Conread position:
               
40-286
               

               
Cow position:
               
chr9:40507545-40507781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
41-273
               

               
Cow position:
               
chr9:25375683-25375912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
213, 78
               

               
Conread position:
               
41-290
               

               
Cow position:
               
chr9:58448064-58448317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 218
               

               
Conread position:
               
43-233
               

               
Cow position:
               
chr9:35128538-35128338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
43-249
               

               
Cow position:
               
chr9:34484646-34484436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-249
               

               
Cow position:
               
chr9:21292357-21292561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
44-267
               

               
Cow position:
               
chr9:16811604-16811829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
45-200
               

               
Cow position:
               
chr9:37677939-37677788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
45-200
               

               
Cow position:
               
chr9:54051823-54051670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
149, 61
               

               
Conread position:
               
45-252
               

               
Cow position:
               
chr9:44822275-44822479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
173, 137
               

               
Conread position:
               
45-254
               

               
Cow position:
               
chr9:38865934-38866142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
175, 68
               

               
Conread position:
               
46-264
               

               
Cow position:
               
chr9:11030232-11030019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
46-281
               

               
Cow position:
               
chr9:27345536-27345770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
149, 121
               

               
Conread position:
               
47-180
               

               
Cow position:
               
chr9:34014202-34014335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
47-247
               

               
Cow position:
               
chr9:53124135-53123934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
173, 7
               

               
Conread position:
               
47-287
               

               
Cow position:
               
chr9:44527153-44526921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
47-290
               

               
Cow position:
               
chr9:39149126-39148885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
173, 137
               

               
Conread position:
               
48-190
               

               
Cow position:
               
chr9:14796724-14796866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
50-199
               

               
Cow position:
               
chr9:55354655-55354506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr9:24887250-24887051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
173, 130
               

               
Conread position:
               
51-200
               

               
Cow position:
               
chr9:6293638-6293488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 55
               

               
Conread position:
               
52-200
               

               
Cow position:
               
chr9:24243679-24243829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
52-300
               

               
Cow position:
               
chr9:36458043-36457794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 203
               

               
Conread position:
               
54-172
               

               
Cow position:
               
chr9:29792186-29792305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
56-225
               

               
Cow position:
               
chr9:41481555-41481726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
56-296
               

               
Cow position:
               
chr9:41644712-41644951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
164, 188
               

               
Conread position:
               
56-311
               

               
Cow position:
               
chr9:8613173-8613425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
57-230
               

               
Cow position:
               
chr9:44093047-44093220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
163, 22
               

               
Conread position:
               
57-248
               

               
Cow position:
               
chr9:41416370-41416177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
58-270
               

               
Cow position:
               
chr9:43680156-43679948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
165, 144
               

               
Conread position:
               
60-270
               

               
Cow position:
               
chr9:35306312-35306525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 156
               

               
Conread position:
               
61-245
               

               
Cow position:
               
chr9:35466489-35466676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
61-249
               

               
Cow position:
               
chr9:7101475-7101280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
62-246
               

               
Cow position:
               
chr9:63134423-63134238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
127, 30
               

               
Conread position:
               
62-249
               

               
Cow position:
               
chr9:37955139-37955328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
63-192
               

               
Cow position:
               
chr9:22070930-22071059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-281
               

               
Cow position:
               
chr9:12495247-12495033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
64-249
               

               
Cow position:
               
chr9:26715286-26715099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
64-274
               

               
Cow position:
               
chr9:31344577-31344785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
156, 183
               

               
Conread position:
               
65-235
               

               
Cow position:
               
chr9:5220781-5220953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
66-295
               

               
Cow position:
               
chr9:2397835-2397608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
67-250
               

               
Cow position:
               
chr9:40855798-40855984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
67-269
               

               
Cow position:
               
chr9:8468083-8467889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
153, 15
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr9:3847428-3847241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr9:5068867-5068683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
68-279
               

               
Cow position:
               
chr9:40603694-40603487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
154, 116
               

               
Conread position:
               
70-249
               

               
Cow position:
               
chr9:28718736-28718563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
70-249
               

               
Cow position:
               
chr9:34362760-34362582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
150, 24
               

               
Conread position:
               
70-249
               

               
Cow position:
               
chr9:34707288-34707464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
70-270
               

               
Cow position:
               
chr9:46344960-46344749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
70-296
               

               
Cow position:
               
chr9:41470074-41470298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
101, 88
               

               
Conread position:
               
71-199
               

               
Cow position:
               
chr9:57116948-57117076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
71-273
               

               
Cow position:
               
chr9:151891-151692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
149, 45
               

               
Conread position:
               
72-191
               

               
Cow position:
               
chr9:18003169-18003287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
72-248
               

               
Cow position:
               
chr9:20237946-20238124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
72-277
               

               
Cow position:
               
chr9:54598693-54598495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
151, 7
               

               
Conread position:
               
72-289
               

               
Cow position:
               
chr9:20828924-20828708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
146, 28
               

               
Conread position:
               
72-294
               

               
Cow position:
               
chr9:1884108-1884344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
72-296
               

               
Cow position:
               
chr9:13993787-13993563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
150, 116
               

               
Conread position:
               
73-249
               

               
Cow position:
               
chr9:26394329-26394502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 18
               

               
Conread position:
               
73-281
               

               
Cow position:
               
chr9:34276189-34276395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 180
               

               
Conread position:
               
75-201
               

               
Cow position:
               
chr9:36634744-36634867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr9:8645286-8645110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
75-258
               

               
Cow position:
               
chr9:52998361-52998541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 31
               

               
Conread position:
               
75-273
               

               
Cow position:
               
chr9:16115589-16115786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 109
               

               
Conread position:
               
75-277
               

               
Cow position:
               
chr9:40984524-40984325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
148, 127
               

               
Conread position:
               
75-288
               

               
Cow position:
               
chr9:61286781-61286574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 100
               

               
Conread position:
               
76-285
               

               
Cow position:
               
chr9:19718322-19718519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 106
               

               
Conread position:
               
76-285
               

               
Cow position:
               
chr9:53061680-53061467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
97, 183
               

               
Conread position:
               
77-286
               

               
Cow position:
               
chr9:20017413-20017209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
78-252
               

               
Cow position:
               
chr9:34917168-34917334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
80-278
               

               
Cow position:
               
chr9:49680128-49679928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 174
               

               
Conread position:
               
81-296
               

               
Cow position:
               
chr9:35932803-35933015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
81-309
               

               
Cow position:
               
chr9:12355801-12355578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 162
               

               
Conread position:
               
82-246
               

               
Cow position:
               
chr9:17785554-17785720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
82-249
               

               
Cow position:
               
chr9:14357427-14357258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
82-270
               

               
Cow position:
               
chr9:58440358-58440554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 15
               

               
Conread position:
               
82-292
               

               
Cow position:
               
chr9:1403524-1403727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
82-293
               

               
Cow position:
               
chr9:40221174-40221378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr9:9091095-9091306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
134, 169
               

               
Conread position:
               
85-250
               

               
Cow position:
               
chr9:34423631-34423463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
94-290
               

               
Cow position:
               
chr9:34964743-34964925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
94-290
               

               
Cow position:
               
chr9:61019362-61019556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 153
               

               
Conread position:
               
97-294
               

               
Cow position:
               
chr9:63185698-63185897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 87
               

               
Conread position:
               
99-248
               

               
Cow position:
               
chr9:28342656-28342808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
100-283
               

               
Cow position:
               
chr9:27495231-27495049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
107-232
               

               
Cow position:
               
chr9:35360301-35360429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
107-249
               

               
Cow position:
               
chr9:11199950-11200094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
107-299
               

               
Cow position:
               
chr9:60741197-60741384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
113, 44
               

               
Conread position:
               
108-283
               

               
Cow position:
               
chr9:13722152-13722328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 145
               

               
Conread position:
               
108-290
               

               
Cow position:
               
chr9:19656990-19657163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
115-281
               

               
Cow position:
               
chr9:16826216-16826384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
57, 142
               

               
Conread position:
               
120-285
               

               
Cow position:
               
chr9:48343921-48344084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
100, 133
               

               
Conread position:
               
124-249
               

               
Cow position:
               
chr9:26578232-26578362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr9:52651524-52651677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 124
               

               
Conread position:
               
129-284
               

               
Cow position:
               
chr9:2985036-2984882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 115
               

               
Conread position:
               
129-299
               

               
Cow position:
               
chr9:45170416-45170583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 124
               

               
Conread position:
               
135-296
               

               
Cow position:
               
chr9:14956979-14956821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 117
               

               
Conread position:
               
152-281
               

               
Cow position:
               
chr9:58232379-58232507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 99
               
Show alignments to all cow chromosomes.