Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 216-850
Cow position: chr12:21057885-21057254 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 14

Conread position: 217-855
Cow position: chr12:18585486-18586137 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 32

Conread position: 226-843
Cow position: chr12:250494-249868 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 23

Conread position: 226-851
Cow position: chr12:3094804-3094162 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 32

Conread position: 226-851
Cow position: chr12:27993919-27994561 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 20

Conread position: 226-851
Cow position: chr12:47802995-47803613 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 21

Conread position: 226-852
Cow position: chr12:17662793-17663410 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 23

Conread position: 226-852
Cow position: chr12:22202849-22202220 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 472, 23

Conread position: 226-855
Cow position: chr12:3717451-3716809 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 8

Conread position: 226-855
Cow position: chr12:10930895-10931550 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 23

Conread position: 226-855
Cow position: chr12:11101067-11101712 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 23

Conread position: 226-855
Cow position: chr12:12755336-12754693 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr12:20459900-20459258 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 23

Conread position: 226-855
Cow position: chr12:21664955-21665600 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 22

Conread position: 226-855
Cow position: chr12:27506830-27506185 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr12:28764180-28763551 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 472, 23

Conread position: 229-842
Cow position: chr12:17968812-17969420 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 17

Conread position: 230-851
Cow position: chr12:21484227-21484862 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 223

Conread position: 230-855
Cow position: chr12:12929082-12928446 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 71

Conread position: 232-855
Cow position: chr12:23138503-23137864 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 50

Conread position: 234-852
Cow position: chr12:19156022-19155400 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 21

Conread position: 234-852
Cow position: chr12:21074665-21075289 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 13

Conread position: 234-855
Cow position: chr12:21610418-21611067 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 15

Conread position: 237-842
Cow position: chr12:36213084-36213729 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-852
Cow position: chr12:62380-61746 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr12:14568987-14568360 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 491

Conread position: 237-855
Cow position: chr12:21719344-21718708 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 100

Conread position: 237-855
Cow position: chr12:25148790-25148154 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 582

Conread position: 237-855
Cow position: chr12:27958698-27958061 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 579

Conread position: 237-855
Cow position: chr12:31027989-31027356 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 45

Conread position: 237-855
Cow position: chr12:35548299-35547671 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 318

Conread position: 237-855
Cow position: chr12:39929996-39930629 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr12:41338400-41337768 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 19

Conread position: 251-851
Cow position: chr12:1476816-1476202 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 202

Conread position: 253-852
Cow position: chr12:23100192-23099584 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 76

Conread position: 267-855
Cow position: chr12:5106917-5107522 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 16

Conread position: 276-852
Cow position: chr12:19871082-19871676 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 171

Conread position: 281-855
Cow position: chr12:1056635-1056044 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 401

Conread position: 286-842
Cow position: chr12:35162641-35163229 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 164

Conread position: 308-852
Cow position: chr12:19197948-19198495 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 70

Conread position: 319-851
Cow position: chr12:32848487-32849025 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 11

Conread position: 323-855
Cow position: chr12:21251397-21250850 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 182

Conread position: 342-842
Cow position: chr12:8842118-8841607 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 87

Conread position: 353-842
Cow position: chr12:1395872-1395378 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 314
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 53, 104

Conread position: 358-852
Cow position: chr12:15939915-15939417 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 285

Conread position: 362-850
Cow position: chr12:11582124-11582620 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 70

Conread position: 363-852
Cow position: chr12:19971718-19972203 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 44

Conread position: 373-855
Cow position: chr12:15925787-15925289 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 273

Conread position: 382-852
Cow position: chr12:3180389-3180870 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 106

Conread position: 390-855
Cow position: chr12:16302358-16301874 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 393-855
Cow position: chr12:33925713-33925233 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 395-852
Cow position: chr12:25313727-25313252 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 111

Conread position: 409-852
Cow position: chr12:43681005-43681466 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 419-850
Cow position: chr12:31829439-31828990 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 419-855
Cow position: chr12:32147617-32147165 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 115

Conread position: 422-851
Cow position: chr12:24557593-24558034 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 209

Conread position: 422-855
Cow position: chr12:46112104-46111653 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 430-855
Cow position: chr12:258751-259194 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 0

Conread position: 433-855
Cow position: chr12:28013207-28012767 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 448-855
Cow position: chr12:21211822-21212247 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 345

Conread position: 454-791
Cow position: chr12:15796976-15797315 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 100

Conread position: 456-855
Cow position: chr12:22517805-22517390 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 120

Conread position: 464-856
Cow position: chr12:5226304-5226699 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 126

Conread position: 467-849
Cow position: chr12:6954399-6954774 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 164, 78

Conread position: 469-844
Cow position: chr12:33296689-33297083 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 348

Conread position: 494-855
Cow position: chr12:21452892-21452513 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 497-855
Cow position: chr12:10075750-10076122 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 150

Conread position: 504-855
Cow position: chr12:24029384-24029018 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 137

Conread position: 505-852
Cow position: chr12:36569247-36568884 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 236
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 82, 10

Conread position: 506-852
Cow position: chr12:15820828-15821182 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 141

Conread position: 522-852
Cow position: chr12:22979778-22979432 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 124

Conread position: 537-852
Cow position: chr12:1093030-1093361 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 107

Conread position: 538-855
Cow position: chr12:36445517-36445850 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 51, 21

Conread position: 545-852
Cow position: chr12:31329194-31328868 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 555-843
Cow position: chr12:12178082-12177789 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 31, 86

Conread position: 557-855
Cow position: chr12:2228719-2229035 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 579-855
Cow position: chr12:8172094-8172369 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 120, 9

Conread position: 582-855
Cow position: chr12:13043055-13042777 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 582-855
Cow position: chr12:34176741-34177019 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 582-856
Cow position: chr12:22480311-22480590 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 594-855
Cow position: chr12:31261211-31260945 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 605-797
Cow position: chr12:39283308-39283110 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 86, 0

Conread position: 609-855
Cow position: chr12:14214274-14214525 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 82, 0

Conread position: 618-855
Cow position: chr12:6186924-6186685 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 630-842
Cow position: chr12:10988591-10988806 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 34

Conread position: 630-852
Cow position: chr12:21946231-21946450 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 129, 61

Conread position: 633-855
Cow position: chr12:23441702-23441475 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 66, 0

Conread position: 634-855
Cow position: chr12:21557188-21557411 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 24

Conread position: 639-840
Cow position: chr12:1345316-1345527 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 660-855
Cow position: chr12:17787377-17787177 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 664-855
Cow position: chr12:10790978-10790782 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 673-855
Cow position: chr12:1855581-1855395 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 685-852
Cow position: chr12:45540685-45540855 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 695-850
Cow position: chr12:29485357-29485200 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 695-855
Cow position: chr12:32900849-32900688 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 699-852
Cow position: chr12:9894615-9894462 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 125

Conread position: 706-852
Cow position: chr12:5904846-5904993 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 93

Conread position: 706-852
Cow position: chr12:22286620-22286474 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 93

Conread position: 709-851
Cow position: chr12:38774409-38774549 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 59

Conread position: 709-855
Cow position: chr12:14940282-14940429 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 720-855
Cow position: chr12:40867661-40867797 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 0

Show alignments to all cow chromosomes.