Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 177-855
Cow position: chr15:23667062-23666364 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 215-852
Cow position: chr15:18265288-18264634 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 34

Conread position: 218-855
Cow position: chr15:18579206-18579852 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 31

Conread position: 219-852
Cow position: chr15:4688509-4689160 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 225-837
Cow position: chr15:2021959-2021338 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 33

Conread position: 226-842
Cow position: chr15:23773790-23774413 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-842
Cow position: chr15:36619659-36619038 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 21

Conread position: 226-849
Cow position: chr15:4641687-4642324 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 23

Conread position: 226-850
Cow position: chr15:31270387-31269749 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 23

Conread position: 226-851
Cow position: chr15:6589448-6588809 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-851
Cow position: chr15:12418225-12417589 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 283

Conread position: 226-852
Cow position: chr15:2927734-2928385 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 23

Conread position: 226-852
Cow position: chr15:10736042-10736692 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-852
Cow position: chr15:18019893-18019260 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 26

Conread position: 226-852
Cow position: chr15:19735315-19734672 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-852
Cow position: chr15:42532534-42533177 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 226-855
Cow position: chr15:2014980-2015600 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 23

Conread position: 226-855
Cow position: chr15:2899771-2899128 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 26

Conread position: 226-855
Cow position: chr15:3258024-3257385 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 23

Conread position: 226-855
Cow position: chr15:6551132-6550484 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 20

Conread position: 226-855
Cow position: chr15:7267088-7267731 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 22

Conread position: 226-855
Cow position: chr15:7270825-7271469 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 23

Conread position: 226-855
Cow position: chr15:7319052-7319695 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr15:7840818-7841449 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 472, 23

Conread position: 226-855
Cow position: chr15:9522718-9522069 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 23

Conread position: 226-855
Cow position: chr15:15344619-15343978 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr15:35750811-35750167 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 228-855
Cow position: chr15:4388235-4388877 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 21

Conread position: 228-855
Cow position: chr15:17035142-17034504 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 21

Conread position: 229-844
Cow position: chr15:5497548-5498173 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 27

Conread position: 229-849
Cow position: chr15:6648919-6648292 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 16

Conread position: 229-852
Cow position: chr15:25553628-25554266 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 64

Conread position: 232-831
Cow position: chr15:336166-336786 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 404
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 42, 143

Conread position: 232-835
Cow position: chr15:8101948-8102554 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 17

Conread position: 232-855
Cow position: chr15:4629746-4629116 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 17

Conread position: 232-855
Cow position: chr15:6463576-6464195 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 15

Conread position: 233-851
Cow position: chr15:35643960-35643335 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 234-844
Cow position: chr15:47202072-47201456 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 15

Conread position: 234-850
Cow position: chr15:5243537-5242929 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 15

Conread position: 234-852
Cow position: chr15:443296-442662 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 439

Conread position: 234-852
Cow position: chr15:6164598-6163977 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 18

Conread position: 234-855
Cow position: chr15:2617574-2616946 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 108

Conread position: 234-855
Cow position: chr15:8029516-8028884 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 18

Conread position: 234-855
Cow position: chr15:21533639-21533007 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 18

Conread position: 236-852
Cow position: chr15:8628803-8629433 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 50

Conread position: 236-852
Cow position: chr15:13682829-13683461 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 11

Conread position: 237-834
Cow position: chr15:6119881-6120488 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 30

Conread position: 237-843
Cow position: chr15:14573813-14573203 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 66

Conread position: 237-846
Cow position: chr15:1775636-1776282 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 179

Conread position: 237-851
Cow position: chr15:4140416-4139782 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-852
Cow position: chr15:21825358-21825993 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 308

Conread position: 237-852
Cow position: chr15:36623167-36622543 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 234

Conread position: 237-855
Cow position: chr15:29815-29178 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr15:60123-60747 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 237

Conread position: 237-855
Cow position: chr15:313307-312669 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 308

Conread position: 237-855
Cow position: chr15:3008340-3007709 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 53

Conread position: 237-855
Cow position: chr15:4815050-4815673 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 268

Conread position: 237-855
Cow position: chr15:6616291-6616928 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr15:12858635-12859271 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 328

Conread position: 237-855
Cow position: chr15:16800767-16801404 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 237-855
Cow position: chr15:21636766-21637402 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 130

Conread position: 237-855
Cow position: chr15:25132449-25133092 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 447

Conread position: 237-855
Cow position: chr15:26591853-26591217 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 214

Conread position: 237-855
Cow position: chr15:32702244-32701608 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 175

Conread position: 237-855
Cow position: chr15:36329967-36329330 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr15:50151193-50151829 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 80

Conread position: 238-855
Cow position: chr15:2644851-2644218 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 548

Conread position: 238-855
Cow position: chr15:36940888-36940253 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 453

Conread position: 241-797
Cow position: chr15:21830437-21831010 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 277

Conread position: 241-852
Cow position: chr15:3791312-3791928 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 11

Conread position: 241-852
Cow position: chr15:7940924-7941544 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 127

Conread position: 247-813
Cow position: chr15:4673844-4674421 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 82

Conread position: 247-852
Cow position: chr15:11627911-11628528 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 59

Conread position: 247-852
Cow position: chr15:24043286-24043882 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 75

Conread position: 247-852
Cow position: chr15:26932543-26933169 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 125

Conread position: 247-856
Cow position: chr15:9438112-9438720 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 378
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 260, 73

Conread position: 251-849
Cow position: chr15:68051-67442 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 386

Conread position: 252-852
Cow position: chr15:4895858-4895266 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 82

Conread position: 253-850
Cow position: chr15:20329890-20329300 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 191

Conread position: 253-855
Cow position: chr15:5641078-5640461 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 28

Conread position: 269-856
Cow position: chr15:24796395-24796974 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 183

Conread position: 276-852
Cow position: chr15:7508643-7508077 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 47

Conread position: 289-810
Cow position: chr15:13286556-13286021 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 114

Conread position: 289-849
Cow position: chr15:6281199-6281767 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 51

Conread position: 289-855
Cow position: chr15:33753734-33753152 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 342

Conread position: 304-852
Cow position: chr15:35404538-35405099 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 71

Conread position: 304-855
Cow position: chr15:20413136-20413704 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 330

Conread position: 307-852
Cow position: chr15:4952891-4953448 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 144

Conread position: 329-852
Cow position: chr15:36356478-36355942 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 93

Conread position: 345-855
Cow position: chr15:27747918-27747388 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 0

Conread position: 350-852
Cow position: chr15:40344643-40344124 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 374

Conread position: 350-855
Cow position: chr15:12442141-12442655 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 48

Conread position: 358-852
Cow position: chr15:6043240-6043726 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 217

Conread position: 360-852
Cow position: chr15:609501-608990 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 127

Conread position: 385-847
Cow position: chr15:16926053-16925582 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 299
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 91, 61

Conread position: 393-855
Cow position: chr15:7848150-7847676 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 326

Conread position: 396-849
Cow position: chr15:32065637-32065165 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 402-855
Cow position: chr15:20173328-20172866 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 118

Conread position: 422-855
Cow position: chr15:16784005-16784450 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 297

Conread position: 425-852
Cow position: chr15:36423931-36423489 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 231

Conread position: 429-834
Cow position: chr15:20353116-20352696 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 21

Conread position: 431-855
Cow position: chr15:18214261-18214692 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 21

Conread position: 433-850
Cow position: chr15:13076209-13076644 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 239

Conread position: 434-855
Cow position: chr15:9910410-9909972 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 243

Conread position: 434-855
Cow position: chr15:50308774-50308342 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 175

Conread position: 440-855
Cow position: chr15:6152946-6152514 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 80

Conread position: 442-855
Cow position: chr15:48556419-48556849 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 94

Conread position: 446-855
Cow position: chr15:2560122-2560549 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 13

Conread position: 460-852
Cow position: chr15:26157727-26158143 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 280
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 127, 357

Conread position: 461-850
Cow position: chr15:37382871-37382464 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 20

Conread position: 464-841
Cow position: chr15:21940302-21939907 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 465-852
Cow position: chr15:45292058-45292445 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 99

Conread position: 481-852
Cow position: chr15:6488508-6488894 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 7

Conread position: 487-855
Cow position: chr15:32477635-32477259 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 239
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 87, 321

Conread position: 491-852
Cow position: chr15:32690184-32689801 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 15

Conread position: 492-852
Cow position: chr15:42597503-42597125 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 496-835
Cow position: chr15:35837869-35838212 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 97, 19

Conread position: 496-855
Cow position: chr15:561482-561856 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 149

Conread position: 506-855
Cow position: chr15:21153058-21152691 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 512-844
Cow position: chr15:2806484-2806153 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 75, 14

Conread position: 521-852
Cow position: chr15:22540059-22539712 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 254

Conread position: 523-855
Cow position: chr15:2590183-2590526 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 214

Conread position: 537-852
Cow position: chr15:20348469-20348141 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 148

Conread position: 545-840
Cow position: chr15:10242931-10243231 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 44, 62

Conread position: 545-852
Cow position: chr15:13388544-13388222 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 44, 30

Conread position: 547-855
Cow position: chr15:18661291-18661616 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 549-855
Cow position: chr15:2533537-2533861 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 40, 0

Conread position: 561-851
Cow position: chr15:34141148-34140857 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 48, 62

Conread position: 564-852
Cow position: chr15:1328989-1329277 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 167

Conread position: 571-855
Cow position: chr15:5197796-5198085 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 577-852
Cow position: chr15:793903-794179 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 114, 164

Conread position: 582-852
Cow position: chr15:364118-363850 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 22, 27

Conread position: 582-852
Cow position: chr15:16740909-16741184 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 53, 116

Conread position: 582-852
Cow position: chr15:17398823-17399098 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 116, 0

Conread position: 582-852
Cow position: chr15:35739092-35739358 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 76

Conread position: 582-855
Cow position: chr15:35597-35869 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 99, 36

Conread position: 582-855
Cow position: chr15:4712759-4713037 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 582-855
Cow position: chr15:4769356-4769634 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 582-855
Cow position: chr15:6563745-6564022 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 118, 0

Conread position: 582-855
Cow position: chr15:45944844-45944565 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 123, 0

Conread position: 582-855
Cow position: chr15:50142111-50142389 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 583-851
Cow position: chr15:38684278-38684018 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 23

Conread position: 587-852
Cow position: chr15:6367630-6367363 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 46

Conread position: 587-852
Cow position: chr15:21452994-21453261 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 31, 77

Conread position: 591-855
Cow position: chr15:7512495-7512226 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 100, 0

Conread position: 598-855
Cow position: chr15:31768681-31768420 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 76

Conread position: 598-855
Cow position: chr15:41029451-41029189 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 93, 0

Conread position: 605-855
Cow position: chr15:45210887-45211142 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 86, 0

Conread position: 610-852
Cow position: chr15:47841969-47842214 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 69, 17

Conread position: 611-855
Cow position: chr15:20404802-20404553 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 80, 0

Conread position: 612-852
Cow position: chr15:22096185-22095942 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 155

Conread position: 615-855
Cow position: chr15:20647049-20647294 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 76, 0

Conread position: 617-855
Cow position: chr15:24569166-24568923 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 81, 0

Conread position: 623-852
Cow position: chr15:10838861-10839093 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 40, 167

Conread position: 624-855
Cow position: chr15:20944265-20944501 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 67, 0

Conread position: 627-855
Cow position: chr15:37743957-37744183 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 47

Conread position: 628-855
Cow position: chr15:6158082-6158314 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 63, 178

Conread position: 629-852
Cow position: chr15:29811845-29811618 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 47, 174

Conread position: 629-855
Cow position: chr15:17773451-17773219 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 5, 0

Conread position: 630-852
Cow position: chr15:33455269-33455488 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 69, 124

Conread position: 635-855
Cow position: chr15:52208588-52208367 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 118, 0

Conread position: 637-855
Cow position: chr15:9620494-9620271 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 641-855
Cow position: chr15:11596471-11596252 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 50, 0

Conread position: 641-855
Cow position: chr15:44576309-44576528 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 50, 0

Conread position: 652-855
Cow position: chr15:33335386-33335594 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 661-852
Cow position: chr15:16967623-16967809 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 92, 34

Conread position: 661-855
Cow position: chr15:36146089-36146289 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 662-850
Cow position: chr15:20458280-20458455 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 665-856
Cow position: chr15:6537921-6537732 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 88, 26

Conread position: 669-851
Cow position: chr15:53357267-53357086 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 90, 39

Conread position: 671-852
Cow position: chr15:37980843-37980657 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 673-855
Cow position: chr15:13190-13003 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 673-856
Cow position: chr15:4933328-4933516 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 675-852
Cow position: chr15:21911347-21911174 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 132, 18

Conread position: 675-852
Cow position: chr15:30811579-30811751 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 84, 12

Conread position: 677-842
Cow position: chr15:33975418-33975583 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 76, 14

Conread position: 684-855
Cow position: chr15:2796305-2796473 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 69, 11

Conread position: 689-842
Cow position: chr15:1838052-1837899 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 144

Conread position: 704-844
Cow position: chr15:15739897-15740038 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 59, 95

Conread position: 706-852
Cow position: chr15:4730613-4730756 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 87

Conread position: 722-852
Cow position: chr15:50085101-50084972 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 727-852
Cow position: chr15:39407273-39407147 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 73

Show alignments to all cow chromosomes.