Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 199-852
Cow position: chr16:49219842-49219174 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 25

Conread position: 206-855
Cow position: chr16:28206992-28206329 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 43

Conread position: 209-852
Cow position: chr16:4973401-4972748 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 19

Conread position: 213-842
Cow position: chr16:11054123-11054758 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 11

Conread position: 216-852
Cow position: chr16:31425182-31425838 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 225-852
Cow position: chr16:45755476-45754852 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 22

Conread position: 226-838
Cow position: chr16:12535802-12535189 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 23

Conread position: 226-849
Cow position: chr16:25964051-25964679 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 30

Conread position: 226-851
Cow position: chr16:8813964-8813327 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 19

Conread position: 226-852
Cow position: chr16:8872294-8871664 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 19

Conread position: 226-852
Cow position: chr16:12161143-12160504 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 23

Conread position: 226-852
Cow position: chr16:14352544-14351905 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-852
Cow position: chr16:15569906-15570548 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 23

Conread position: 226-852
Cow position: chr16:18694832-18694186 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-852
Cow position: chr16:21017696-21018338 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-852
Cow position: chr16:39615376-39616001 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-852
Cow position: chr16:47772398-47773043 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-852
Cow position: chr16:51086919-51087562 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 21

Conread position: 226-855
Cow position: chr16:40673-41316 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 23

Conread position: 226-855
Cow position: chr16:417030-417677 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 23

Conread position: 226-855
Cow position: chr16:839420-840052 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:2725086-2724442 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:3148894-3148257 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 23

Conread position: 226-855
Cow position: chr16:3769874-3769226 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 226-855
Cow position: chr16:4426227-4426872 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:7466750-7467390 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 23

Conread position: 226-855
Cow position: chr16:11633707-11633062 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 23

Conread position: 226-855
Cow position: chr16:15187205-15187846 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:15494595-15495235 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:15980241-15979596 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:23249853-23249173 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 30

Conread position: 226-855
Cow position: chr16:23985447-23986095 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 23

Conread position: 226-855
Cow position: chr16:25344114-25344761 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:25455325-25454679 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 23

Conread position: 226-855
Cow position: chr16:27731245-27730599 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr16:37478724-37478079 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 226-855
Cow position: chr16:40294034-40293388 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-856
Cow position: chr16:10440376-10441022 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 227-855
Cow position: chr16:25444015-25444658 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 22

Conread position: 227-855
Cow position: chr16:26665841-26666486 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 22

Conread position: 227-855
Cow position: chr16:52526369-52527013 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 25

Conread position: 230-855
Cow position: chr16:24407049-24407694 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 34

Conread position: 230-855
Cow position: chr16:41033440-41034082 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 232-851
Cow position: chr16:44049781-44049146 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 17

Conread position: 232-852
Cow position: chr16:16267756-16267130 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 172

Conread position: 232-855
Cow position: chr16:2481001-2480373 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 9

Conread position: 232-856
Cow position: chr16:46102476-46101836 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 238

Conread position: 234-813
Cow position: chr16:658104-658690 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 15

Conread position: 234-826
Cow position: chr16:49254090-49253499 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 15

Conread position: 234-852
Cow position: chr16:193790-193159 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 15

Conread position: 234-852
Cow position: chr16:42074743-42074119 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 13

Conread position: 234-852
Cow position: chr16:53611952-53612580 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 15

Conread position: 235-842
Cow position: chr16:16539574-16540175 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 76

Conread position: 235-855
Cow position: chr16:16150603-16149966 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 329

Conread position: 236-850
Cow position: chr16:56914089-56913461 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 220

Conread position: 236-855
Cow position: chr16:1733887-1734521 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 85

Conread position: 236-855
Cow position: chr16:43895118-43894479 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 237-833
Cow position: chr16:3819511-3820132 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 209

Conread position: 237-852
Cow position: chr16:5525960-5525320 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-852
Cow position: chr16:24210252-24209619 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 234

Conread position: 237-852
Cow position: chr16:29157794-29158391 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 84

Conread position: 237-855
Cow position: chr16:20277999-20278622 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 78

Conread position: 237-855
Cow position: chr16:28194155-28193519 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 106

Conread position: 237-855
Cow position: chr16:47403529-47404162 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 173

Conread position: 238-851
Cow position: chr16:45704640-45704020 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 11

Conread position: 241-855
Cow position: chr16:18975019-18975650 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 68

Conread position: 247-852
Cow position: chr16:49231125-49230501 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 79

Conread position: 248-852
Cow position: chr16:55911626-55911032 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 64

Conread position: 248-855
Cow position: chr16:26990782-26990158 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 92

Conread position: 250-855
Cow position: chr16:13422759-13422142 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 16

Conread position: 250-857
Cow position: chr16:25087768-25088401 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 59

Conread position: 252-852
Cow position: chr16:19798526-19797915 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 67

Conread position: 253-852
Cow position: chr16:30052111-30052724 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 164

Conread position: 259-855
Cow position: chr16:41515300-41515916 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 285

Conread position: 269-855
Cow position: chr16:19081230-19081828 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 498

Conread position: 269-855
Cow position: chr16:42210674-42211278 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 0

Conread position: 275-852
Cow position: chr16:236681-237256 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 120

Conread position: 275-852
Cow position: chr16:37925789-37925206 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 46

Conread position: 278-852
Cow position: chr16:7154789-7155379 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 92

Conread position: 289-852
Cow position: chr16:2233522-2232947 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 103

Conread position: 305-851
Cow position: chr16:55150569-55151108 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 66

Conread position: 307-852
Cow position: chr16:45608631-45609188 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 397

Conread position: 314-855
Cow position: chr16:23533774-23533218 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 162

Conread position: 323-851
Cow position: chr16:5894674-5895211 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 29

Conread position: 326-855
Cow position: chr16:24241165-24240618 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 334-855
Cow position: chr16:28468880-28468341 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 0

Conread position: 335-852
Cow position: chr16:47367242-47367765 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 106

Conread position: 336-855
Cow position: chr16:10373189-10372654 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 339-855
Cow position: chr16:6676968-6677503 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 342-852
Cow position: chr16:26499935-26500425 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 64

Conread position: 342-852
Cow position: chr16:39034082-39033566 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 255

Conread position: 357-840
Cow position: chr16:12244774-12244278 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 13

Conread position: 360-844
Cow position: chr16:50713170-50712668 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 362-852
Cow position: chr16:25173521-25174018 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 30

Conread position: 368-838
Cow position: chr16:3349291-3349770 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 83

Conread position: 374-855
Cow position: chr16:42746145-42745702 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 31

Conread position: 381-852
Cow position: chr16:37446409-37445925 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 257

Conread position: 383-855
Cow position: chr16:40878884-40879374 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 385-855
Cow position: chr16:5435119-5435607 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 386-856
Cow position: chr16:26627047-26627535 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 0

Conread position: 389-852
Cow position: chr16:45533766-45534241 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 47

Conread position: 392-792
Cow position: chr16:15256169-15255763 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 218

Conread position: 392-838
Cow position: chr16:5416966-5416511 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 102

Conread position: 392-855
Cow position: chr16:48410935-48411417 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 393-855
Cow position: chr16:7303058-7303538 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 393-855
Cow position: chr16:18651280-18650802 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 247

Conread position: 399-852
Cow position: chr16:1958415-1957947 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 150

Conread position: 409-855
Cow position: chr16:22799386-22798922 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 409-855
Cow position: chr16:24615747-24615293 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 303

Conread position: 411-855
Cow position: chr16:1564065-1563606 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 37

Conread position: 413-855
Cow position: chr16:15904882-15904438 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 39

Conread position: 414-852
Cow position: chr16:41575577-41576022 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 57

Conread position: 424-851
Cow position: chr16:8482285-8481851 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 45

Conread position: 426-852
Cow position: chr16:259496-259071 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 266
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 41

Conread position: 428-850
Cow position: chr16:25042393-25042833 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 5

Conread position: 429-852
Cow position: chr16:25158055-25157627 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 21

Conread position: 433-855
Cow position: chr16:12485958-12485518 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 440-855
Cow position: chr16:25074942-25075375 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 441-841
Cow position: chr16:54323068-54322652 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 215

Conread position: 453-855
Cow position: chr16:13722227-13721807 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 8

Conread position: 459-855
Cow position: chr16:14039794-14040207 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 116

Conread position: 471-852
Cow position: chr16:41805061-41804677 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 139

Conread position: 479-855
Cow position: chr16:25879704-25880098 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 485-852
Cow position: chr16:49127295-49126930 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 30

Conread position: 488-855
Cow position: chr16:49780553-49780168 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 498-852
Cow position: chr16:28268308-28267938 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 173

Conread position: 498-855
Cow position: chr16:23711880-23711505 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 499-852
Cow position: chr16:18745622-18745261 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 213

Conread position: 501-852
Cow position: chr16:5665508-5665880 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 308

Conread position: 508-843
Cow position: chr16:7457565-7457216 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 259

Conread position: 522-855
Cow position: chr16:2960110-2960461 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 523-852
Cow position: chr16:41834313-41834645 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 107

Conread position: 525-851
Cow position: chr16:27012836-27013175 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 236
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 64, 140

Conread position: 525-855
Cow position: chr16:18212761-18212413 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 529-855
Cow position: chr16:24988066-24987722 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 535-852
Cow position: chr16:5833245-5833576 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 44, 111

Conread position: 544-855
Cow position: chr16:4721937-4722261 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 96

Conread position: 545-852
Cow position: chr16:49142619-49142293 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 42, 272

Conread position: 545-855
Cow position: chr16:5488325-5488653 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 546-855
Cow position: chr16:29050099-29050427 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 83

Conread position: 577-856
Cow position: chr16:9785807-9786098 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 51, 234

Conread position: 580-852
Cow position: chr16:14029644-14029382 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 183, 14

Conread position: 582-840
Cow position: chr16:16681091-16680828 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 582-852
Cow position: chr16:51401043-51400782 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 73

Conread position: 582-852
Cow position: chr16:54231838-54231569 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 22, 83

Conread position: 582-855
Cow position: chr16:7385269-7385547 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 586-843
Cow position: chr16:54703006-54703266 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 113, 6

Conread position: 587-840
Cow position: chr16:23810030-23810284 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 174, 206

Conread position: 587-852
Cow position: chr16:25935255-25935522 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 219

Conread position: 588-852
Cow position: chr16:24147167-24147431 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 45, 104

Conread position: 589-850
Cow position: chr16:50190603-50190341 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 172

Conread position: 592-852
Cow position: chr16:15369508-15369770 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 101

Conread position: 594-855
Cow position: chr16:29539291-29539029 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 0

Conread position: 595-852
Cow position: chr16:5632492-5632234 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 168
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 59, 138

Conread position: 595-852
Cow position: chr16:25168754-25169005 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 171
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 164, 34

Conread position: 597-844
Cow position: chr16:22320752-22320518 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 166, 60

Conread position: 602-850
Cow position: chr16:44675876-44676131 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 5, 192

Conread position: 605-852
Cow position: chr16:9417392-9417643 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 22, 14

Conread position: 606-855
Cow position: chr16:5350980-5350726 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 615-855
Cow position: chr16:46386002-46385765 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 81, 108

Conread position: 616-852
Cow position: chr16:48341669-48341430 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 119

Conread position: 620-855
Cow position: chr16:23773133-23772893 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 624-850
Cow position: chr16:7541032-7541259 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 628-852
Cow position: chr16:23403364-23403592 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 71, 193

Conread position: 628-855
Cow position: chr16:26658515-26658747 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 630-855
Cow position: chr16:32118131-32118361 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 61, 0

Conread position: 631-852
Cow position: chr16:19062389-19062614 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 67, 173

Conread position: 631-857
Cow position: chr16:2224396-2224166 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 192

Conread position: 640-842
Cow position: chr16:14570164-14570361 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 112, 35

Conread position: 640-855
Cow position: chr16:20502597-20502817 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 652-837
Cow position: chr16:39456963-39457149 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 102

Conread position: 652-855
Cow position: chr16:16942290-16942498 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 661-855
Cow position: chr16:47247655-47247854 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 662-855
Cow position: chr16:49096548-49096746 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 663-838
Cow position: chr16:48010808-48010634 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 135, 0

Conread position: 664-852
Cow position: chr16:6390070-6389877 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 27, 0

Conread position: 665-851
Cow position: chr16:2963270-2963079 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 665-851
Cow position: chr16:44450529-44450721 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 665-855
Cow position: chr16:35342914-35342719 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 134

Conread position: 676-852
Cow position: chr16:11007307-11007490 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 94

Conread position: 684-852
Cow position: chr16:42079738-42079577 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 7

Conread position: 687-855
Cow position: chr16:39645596-39645766 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 108

Conread position: 695-852
Cow position: chr16:54228667-54228507 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 64, 36

Conread position: 695-856
Cow position: chr16:13988912-13989066 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 109, 17

Conread position: 697-852
Cow position: chr16:19409732-19409576 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 103

Conread position: 704-849
Cow position: chr16:44973117-44972971 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 704-851
Cow position: chr16:7009957-7010105 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 704-852
Cow position: chr16:42254683-42254539 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 46

Conread position: 705-849
Cow position: chr16:3027063-3027208 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 705-849
Cow position: chr16:3030641-3030496 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 707-852
Cow position: chr16:18204861-18205007 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 709-851
Cow position: chr16:14722626-14722484 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 21

Conread position: 720-852
Cow position: chr16:46223865-46223732 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 80

Show alignments to all cow chromosomes.