Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 226-842
Cow position: chr18:35296087-35296697 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 23

Conread position: 226-852
Cow position: chr18:5535893-5536535 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-852
Cow position: chr18:12240760-12241379 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-852
Cow position: chr18:15858088-15858724 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 23

Conread position: 226-855
Cow position: chr18:14418897-14419542 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 23

Conread position: 226-855
Cow position: chr18:23801943-23802588 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr18:25354439-25355086 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr18:25923305-25923936 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 226-855
Cow position: chr18:28969366-28968724 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 26

Conread position: 226-855
Cow position: chr18:36776195-36776841 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 226-855
Cow position: chr18:37508886-37509527 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 23

Conread position: 226-855
Cow position: chr18:38158621-38157977 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 22

Conread position: 226-855
Cow position: chr18:40483915-40484564 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 23

Conread position: 226-855
Cow position: chr18:51484510-51485152 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 29

Conread position: 228-855
Cow position: chr18:16173691-16173048 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 21

Conread position: 229-852
Cow position: chr18:13509127-13508506 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 232-855
Cow position: chr18:11869410-11870052 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 234-850
Cow position: chr18:33607173-33607787 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 17

Conread position: 234-852
Cow position: chr18:51602739-51602103 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 0

Conread position: 234-855
Cow position: chr18:29863677-29863039 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 15

Conread position: 235-855
Cow position: chr18:52655735-52656359 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 14

Conread position: 236-852
Cow position: chr18:35056954-35057587 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 171

Conread position: 237-851
Cow position: chr18:24619357-24619984 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 459

Conread position: 237-851
Cow position: chr18:54032648-54033269 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 12

Conread position: 237-852
Cow position: chr18:27989685-27990319 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 105

Conread position: 237-855
Cow position: chr18:603536-602899 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 237-855
Cow position: chr18:47744680-47745318 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-856
Cow position: chr18:19310097-19310718 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 41

Conread position: 238-842
Cow position: chr18:10112940-10113560 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 214

Conread position: 238-852
Cow position: chr18:17943473-17944072 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 94

Conread position: 238-855
Cow position: chr18:52574045-52574666 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 281

Conread position: 243-842
Cow position: chr18:6104470-6103853 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 48

Conread position: 247-821
Cow position: chr18:10896138-10896719 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 230

Conread position: 253-855
Cow position: chr18:24037898-24037281 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 199

Conread position: 253-855
Cow position: chr18:51459896-51459280 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 197

Conread position: 253-855
Cow position: chr18:51697591-51698205 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 88

Conread position: 259-852
Cow position: chr18:41237482-41238093 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 45

Conread position: 269-855
Cow position: chr18:6734001-6733400 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 285

Conread position: 269-855
Cow position: chr18:37732651-37733254 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 299

Conread position: 269-855
Cow position: chr18:50093482-50092879 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 98

Conread position: 276-852
Cow position: chr18:17335761-17335179 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 98

Conread position: 286-852
Cow position: chr18:55554229-55554813 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 291-837
Cow position: chr18:22791433-22790864 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 221

Conread position: 311-842
Cow position: chr18:29798083-29797533 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 516

Conread position: 316-855
Cow position: chr18:35444360-35443812 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 403

Conread position: 345-851
Cow position: chr18:23701760-23701242 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 84

Conread position: 354-848
Cow position: chr18:15171908-15172405 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 64

Conread position: 358-843
Cow position: chr18:33522280-33522771 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 27

Conread position: 360-855
Cow position: chr18:13269962-13270475 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 0

Conread position: 366-855
Cow position: chr18:23688230-23688737 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 374-852
Cow position: chr18:2853723-2853226 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 5

Conread position: 392-852
Cow position: chr18:44403924-44404396 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 294
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 83, 204

Conread position: 407-852
Cow position: chr18:15688133-15688564 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 292
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 114, 46

Conread position: 419-852
Cow position: chr18:89282-89714 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 88

Conread position: 421-855
Cow position: chr18:18215901-18215448 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 9

Conread position: 423-851
Cow position: chr18:23659780-23659334 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 423-855
Cow position: chr18:26243343-26242894 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 424-855
Cow position: chr18:30606812-30607261 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 453-855
Cow position: chr18:10291876-10292296 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 456-850
Cow position: chr18:25972911-25972506 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 466-852
Cow position: chr18:1659393-1659007 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 260
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 41

Conread position: 472-855
Cow position: chr18:16094049-16094450 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 472-855
Cow position: chr18:43430171-43430568 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 324

Conread position: 506-852
Cow position: chr18:44261267-44261627 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 58

Conread position: 527-852
Cow position: chr18:4949360-4949720 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 260
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 16, 301

Conread position: 530-855
Cow position: chr18:16857010-16857350 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 94

Conread position: 534-855
Cow position: chr18:29078963-29079302 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 539-855
Cow position: chr18:51690028-51690362 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 545-842
Cow position: chr18:36771295-36770982 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 204

Conread position: 546-850
Cow position: chr18:39002872-39002573 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 153, 98

Conread position: 546-855
Cow position: chr18:41837852-41837525 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 581-852
Cow position: chr18:16025373-16025095 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 26, 225

Conread position: 582-842
Cow position: chr18:47985184-47985442 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 117, 23

Conread position: 582-852
Cow position: chr18:1022732-1022460 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 44

Conread position: 582-852
Cow position: chr18:37693000-37692723 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 179

Conread position: 582-857
Cow position: chr18:33406595-33406874 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 117, 221

Conread position: 587-855
Cow position: chr18:45978674-45978941 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 97

Conread position: 594-851
Cow position: chr18:33850829-33851090 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 98, 214

Conread position: 606-855
Cow position: chr18:6866538-6866792 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 85, 0

Conread position: 617-855
Cow position: chr18:55436812-55436569 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 0

Conread position: 620-852
Cow position: chr18:55700194-55699959 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 54, 178

Conread position: 628-852
Cow position: chr18:27193842-27194065 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 131, 78

Conread position: 628-852
Cow position: chr18:39494122-39494348 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 166

Conread position: 628-855
Cow position: chr18:19463129-19462897 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 63, 0

Conread position: 629-852
Cow position: chr18:29240655-29240881 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 76, 138

Conread position: 632-844
Cow position: chr18:36223780-36223988 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 171, 115

Conread position: 638-855
Cow position: chr18:26305616-26305837 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 60, 96

Conread position: 640-842
Cow position: chr18:29059475-29059269 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 35, 163

Conread position: 640-855
Cow position: chr18:21580209-21579989 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 655-852
Cow position: chr18:24219332-24219130 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 44, 0

Conread position: 660-855
Cow position: chr18:16640813-16641013 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 664-855
Cow position: chr18:42628733-42628929 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 665-855
Cow position: chr18:32210445-32210247 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 669-852
Cow position: chr18:42466970-42466785 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 30, 134

Conread position: 678-852
Cow position: chr18:3149349-3149166 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 41, 17

Conread position: 684-855
Cow position: chr18:51345681-51345853 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 691-852
Cow position: chr18:14047769-14047929 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 695-852
Cow position: chr18:7953048-7953206 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 66, 0

Conread position: 695-855
Cow position: chr18:36135234-36135073 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 703-852
Cow position: chr18:33157948-33158098 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 96

Conread position: 704-855
Cow position: chr18:27995092-27995244 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 704-855
Cow position: chr18:33617009-33616857 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 706-855
Cow position: chr18:29586197-29586047 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 726-852
Cow position: chr18:9364985-9365110 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 74

Show alignments to all cow chromosomes.