Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 218-852
Cow position: chr19:29393259-29393910 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 31

Conread position: 226-827
Cow position: chr19:5732428-5733038 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 21

Conread position: 226-843
Cow position: chr19:7491025-7491649 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 20

Conread position: 226-852
Cow position: chr19:2270372-2269733 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 8

Conread position: 226-852
Cow position: chr19:2588119-2588750 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-852
Cow position: chr19:28795391-28794763 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 23

Conread position: 226-855
Cow position: chr19:175393-176048 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr19:436411-435765 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 226-855
Cow position: chr19:4388508-4389145 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr19:33876342-33876987 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 21

Conread position: 226-855
Cow position: chr19:33944492-33945137 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 26

Conread position: 226-855
Cow position: chr19:39182613-39181969 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr19:40849562-40848918 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 23

Conread position: 229-852
Cow position: chr19:30474220-30473577 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 232-851
Cow position: chr19:1293281-1293917 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 20

Conread position: 232-851
Cow position: chr19:5901958-5902594 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 17

Conread position: 232-855
Cow position: chr19:24734075-24734708 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 16

Conread position: 234-852
Cow position: chr19:542686-542056 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 12

Conread position: 234-852
Cow position: chr19:33624522-33625140 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 15

Conread position: 234-852
Cow position: chr19:55164721-55164089 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 132

Conread position: 234-855
Cow position: chr19:41268-41904 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 13

Conread position: 234-855
Cow position: chr19:40016653-40016021 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 15

Conread position: 237-852
Cow position: chr19:20611268-20611902 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr19:10613162-10613799 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr19:19388768-19389405 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr19:28596311-28596943 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 78

Conread position: 237-855
Cow position: chr19:33527781-33528418 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 247-855
Cow position: chr19:196957-197585 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 209

Conread position: 251-855
Cow position: chr19:34985053-34985658 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 253-850
Cow position: chr19:36188677-36189264 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 32

Conread position: 253-852
Cow position: chr19:5044721-5044132 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 31

Conread position: 254-852
Cow position: chr19:24672541-24671928 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 43

Conread position: 274-852
Cow position: chr19:39603487-39602917 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 126

Conread position: 289-855
Cow position: chr19:30037920-30037336 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 322-855
Cow position: chr19:30516007-30515471 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 275

Conread position: 323-850
Cow position: chr19:45464167-45464699 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 335-852
Cow position: chr19:405182-405716 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 141

Conread position: 350-795
Cow position: chr19:39340019-39339559 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 50

Conread position: 354-855
Cow position: chr19:36351330-36351839 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 35

Conread position: 366-848
Cow position: chr19:35382005-35381515 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 30

Conread position: 372-848
Cow position: chr19:9098680-9099180 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 52

Conread position: 380-855
Cow position: chr19:48626137-48626630 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 0

Conread position: 395-852
Cow position: chr19:20403376-20403851 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 274

Conread position: 396-855
Cow position: chr19:39394295-39394772 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 398-852
Cow position: chr19:25085305-25085758 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 238

Conread position: 403-855
Cow position: chr19:31781672-31782141 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 228

Conread position: 403-855
Cow position: chr19:41205125-41204656 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 43

Conread position: 409-851
Cow position: chr19:42866581-42867032 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 392

Conread position: 409-855
Cow position: chr19:40791249-40790787 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 399

Conread position: 421-855
Cow position: chr19:27082289-27081844 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 228

Conread position: 423-855
Cow position: chr19:16317087-16316648 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 290

Conread position: 428-843
Cow position: chr19:12057332-12057747 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 290
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 71, 5

Conread position: 443-852
Cow position: chr19:32208550-32208953 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 272
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 39, 9

Conread position: 448-828
Cow position: chr19:20672434-20672051 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 21

Conread position: 470-851
Cow position: chr19:52466118-52465721 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 274
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 99, 299

Conread position: 476-852
Cow position: chr19:34906151-34905757 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 155

Conread position: 476-855
Cow position: chr19:929995-930390 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 499-852
Cow position: chr19:12209737-12209362 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 501-852
Cow position: chr19:1581709-1581341 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 17

Conread position: 505-852
Cow position: chr19:46821059-46821419 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 250
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 82, 135

Conread position: 511-856
Cow position: chr19:7064901-7065250 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 73, 32

Conread position: 515-855
Cow position: chr19:12652083-12652446 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 518-852
Cow position: chr19:44839954-44839619 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 237
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 169

Conread position: 521-852
Cow position: chr19:6338-6669 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 232, 43

Conread position: 532-855
Cow position: chr19:10195643-10195984 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 537-855
Cow position: chr19:23487996-23488327 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 280

Conread position: 539-844
Cow position: chr19:39696724-39697044 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 88

Conread position: 540-855
Cow position: chr19:3086031-3086363 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 207

Conread position: 545-855
Cow position: chr19:14157657-14157979 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 82

Conread position: 562-857
Cow position: chr19:40884251-40883950 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 9

Conread position: 581-852
Cow position: chr19:15720580-15720319 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 224, 14

Conread position: 582-849
Cow position: chr19:27347759-27347503 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 22

Conread position: 582-852
Cow position: chr19:1663365-1663635 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 93, 172

Conread position: 582-852
Cow position: chr19:29366821-29367096 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 582-852
Cow position: chr19:29624329-29624604 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 582-855
Cow position: chr19:3406473-3406751 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 582-855
Cow position: chr19:7078549-7078827 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 587-852
Cow position: chr19:36395484-36395754 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 589-848
Cow position: chr19:255825-255563 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 109, 159

Conread position: 589-851
Cow position: chr19:21337605-21337339 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 109, 237

Conread position: 594-851
Cow position: chr19:3221417-3221676 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 140

Conread position: 594-852
Cow position: chr19:12601394-12601136 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 159, 99

Conread position: 598-852
Cow position: chr19:14528143-14528389 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 101, 7

Conread position: 609-855
Cow position: chr19:8273753-8273502 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 610-852
Cow position: chr19:36419429-36419675 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 162
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 77, 163

Conread position: 629-852
Cow position: chr19:29628353-29628122 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 99

Conread position: 629-855
Cow position: chr19:26518991-26518760 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 62, 0

Conread position: 633-855
Cow position: chr19:30237054-30237279 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 66, 126

Conread position: 637-852
Cow position: chr19:14180652-14180433 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 60, 81

Conread position: 646-855
Cow position: chr19:15796781-15796995 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 660-855
Cow position: chr19:50833531-50833332 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 660-855
Cow position: chr19:52148055-52147855 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 144

Conread position: 665-855
Cow position: chr19:20928552-20928747 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 670-852
Cow position: chr19:44216468-44216283 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 42

Conread position: 682-851
Cow position: chr19:14580677-14580847 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 80, 119

Conread position: 684-852
Cow position: chr19:19501292-19501123 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 684-852
Cow position: chr19:30717290-30717458 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 149, 9

Conread position: 693-851
Cow position: chr19:7610017-7610175 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 111, 100

Conread position: 696-852
Cow position: chr19:20433827-20433675 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 702-852
Cow position: chr19:42241204-42241055 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 101, 53

Conread position: 704-851
Cow position: chr19:19805451-19805303 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 98

Conread position: 704-855
Cow position: chr19:5680232-5680080 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 706-852
Cow position: chr19:1267807-1267663 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 49

Conread position: 717-852
Cow position: chr19:15843044-15842907 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 738-852
Cow position: chr19:15068859-15068744 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 60

Show alignments to all cow chromosomes.