Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 218-855
Cow position: chr23:27401946-27402598 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 31

Conread position: 218-855
Cow position: chr23:30634784-30634130 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 31

Conread position: 226-842
Cow position: chr23:15216015-15215386 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 23

Conread position: 226-851
Cow position: chr23:11343315-11343957 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 23

Conread position: 226-852
Cow position: chr23:11078106-11078739 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-855
Cow position: chr23:2760720-2761362 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 23

Conread position: 226-855
Cow position: chr23:2791946-2791309 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 23

Conread position: 226-855
Cow position: chr23:4891514-4892160 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr23:11781603-11782250 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 23

Conread position: 226-855
Cow position: chr23:14960130-14959493 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr23:14971131-14970490 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 23

Conread position: 226-855
Cow position: chr23:15528405-15529051 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 23

Conread position: 226-855
Cow position: chr23:20153401-20152756 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 21

Conread position: 227-852
Cow position: chr23:22144492-22143849 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 22

Conread position: 227-855
Cow position: chr23:37199695-37199046 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 22

Conread position: 232-842
Cow position: chr23:4532873-4532246 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 28

Conread position: 233-852
Cow position: chr23:4516366-4516994 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 22

Conread position: 234-855
Cow position: chr23:31703721-31704359 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 15

Conread position: 236-855
Cow position: chr23:3709231-3709863 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 581

Conread position: 237-851
Cow position: chr23:16496443-16495816 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 330

Conread position: 237-855
Cow position: chr23:609556-610164 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 428

Conread position: 237-855
Cow position: chr23:1958957-1959591 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 203

Conread position: 237-855
Cow position: chr23:2024257-2023620 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 237-855
Cow position: chr23:2321114-2320486 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 132

Conread position: 237-855
Cow position: chr23:3285586-3286223 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 511

Conread position: 237-855
Cow position: chr23:3301683-3302319 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 329

Conread position: 237-855
Cow position: chr23:10680006-10679369 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chr23:24119382-24120019 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 247-811
Cow position: chr23:25670919-25670364 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 173

Conread position: 247-840
Cow position: chr23:20390177-20389572 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 80

Conread position: 248-855
Cow position: chr23:14265192-14265807 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 33

Conread position: 253-852
Cow position: chr23:1338628-1338032 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 32

Conread position: 253-855
Cow position: chr23:14216379-14215770 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 245

Conread position: 253-855
Cow position: chr23:28987195-28987806 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 216

Conread position: 253-855
Cow position: chr23:29042627-29043248 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 88

Conread position: 258-843
Cow position: chr23:1326463-1325863 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 31

Conread position: 262-855
Cow position: chr23:771637-771027 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 30

Conread position: 269-833
Cow position: chr23:1399348-1398788 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 53

Conread position: 272-852
Cow position: chr23:14840310-14839727 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 79

Conread position: 275-855
Cow position: chr23:11079249-11079849 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 280-855
Cow position: chr23:10937431-10936832 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 0

Conread position: 307-850
Cow position: chr23:11127912-11128477 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 474

Conread position: 322-855
Cow position: chr23:5440831-5441381 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 0

Conread position: 327-852
Cow position: chr23:25357264-25357807 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 125

Conread position: 328-833
Cow position: chr23:2180927-2180407 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 369

Conread position: 345-855
Cow position: chr23:2409276-2408751 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 293

Conread position: 363-852
Cow position: chr23:26828207-26828710 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 0

Conread position: 366-856
Cow position: chr23:29624933-29625444 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 20

Conread position: 368-855
Cow position: chr23:39744823-39745324 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 443

Conread position: 389-852
Cow position: chr23:16999427-16999901 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 61

Conread position: 396-843
Cow position: chr23:4637367-4636903 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 158

Conread position: 400-852
Cow position: chr23:6174013-6173559 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 52

Conread position: 419-855
Cow position: chr23:954786-954336 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 225

Conread position: 429-855
Cow position: chr23:2473287-2472836 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 209

Conread position: 440-855
Cow position: chr23:28305874-28306309 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 114

Conread position: 453-855
Cow position: chr23:38935170-38934770 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 211

Conread position: 453-856
Cow position: chr23:30623453-30623036 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 164

Conread position: 455-855
Cow position: chr23:11070122-11070544 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 61

Conread position: 467-843
Cow position: chr23:5871339-5870956 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 474-852
Cow position: chr23:26230236-26230591 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 117

Conread position: 476-855
Cow position: chr23:36028185-36027788 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 479-855
Cow position: chr23:41014999-41015393 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 480-852
Cow position: chr23:1311499-1311109 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 66

Conread position: 501-851
Cow position: chr23:29143166-29143527 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 85, 24

Conread position: 501-855
Cow position: chr23:15180051-15180422 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 505-852
Cow position: chr23:6593828-6593475 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 234
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 82, 129

Conread position: 517-855
Cow position: chr23:11377209-11376853 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 518-855
Cow position: chr23:22170019-22170371 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 16

Conread position: 525-852
Cow position: chr23:17403729-17404075 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 292

Conread position: 530-855
Cow position: chr23:27312966-27313309 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 544-855
Cow position: chr23:671307-671636 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 545-855
Cow position: chr23:19492985-19493313 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 547-855
Cow position: chr23:8707529-8707855 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 553-851
Cow position: chr23:25553746-25554052 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 8, 108

Conread position: 575-852
Cow position: chr23:5882486-5882764 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 182
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 184, 42

Conread position: 578-852
Cow position: chr23:29446761-29446488 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 12

Conread position: 578-852
Cow position: chr23:40824983-40825260 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 9, 29

Conread position: 582-852
Cow position: chr23:36308399-36308665 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 109

Conread position: 588-855
Cow position: chr23:24098320-24098592 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 239

Conread position: 589-842
Cow position: chr23:20025127-20025385 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 102, 214

Conread position: 589-851
Cow position: chr23:8290654-8290914 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 125

Conread position: 590-852
Cow position: chr23:31833805-31833543 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 82, 103

Conread position: 593-855
Cow position: chr23:12863902-12864163 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 98, 29

Conread position: 595-833
Cow position: chr23:1535325-1535565 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 88, 31

Conread position: 595-856
Cow position: chr23:40889974-40890235 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 98, 179

Conread position: 599-852
Cow position: chr23:1322191-1321935 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 56, 78

Conread position: 609-855
Cow position: chr23:2529183-2528932 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 82, 0

Conread position: 613-855
Cow position: chr23:40553905-40553658 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 628-852
Cow position: chr23:20541208-20541429 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 69, 30

Conread position: 628-855
Cow position: chr23:4266668-4266900 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 63, 0

Conread position: 634-855
Cow position: chr23:12977996-12978218 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 119, 0

Conread position: 643-855
Cow position: chr23:9267615-9267398 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 660-842
Cow position: chr23:19057088-19056901 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 664-855
Cow position: chr23:39389337-39389533 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 665-852
Cow position: chr23:29472040-29471848 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 671-855
Cow position: chr23:10674570-10674759 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 673-855
Cow position: chr23:39108536-39108356 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 80, 18

Conread position: 684-855
Cow position: chr23:1113244-1113416 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 695-849
Cow position: chr23:4809351-4809505 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 94

Conread position: 695-855
Cow position: chr23:4581329-4581490 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 695-855
Cow position: chr23:5458042-5458203 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 697-852
Cow position: chr23:25370587-25370432 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 56, 33

Conread position: 697-852
Cow position: chr23:25412195-25412039 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 33

Conread position: 704-852
Cow position: chr23:35937131-35937279 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 43

Conread position: 710-852
Cow position: chr23:35929251-35929397 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 716-843
Cow position: chr23:33233998-33233870 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 726-852
Cow position: chr23:14738233-14738360 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 74

Show alignments to all cow chromosomes.