Cow genome map
Conread name: | Tra1-TCH01E080082 |
Conread position: | 203-852 |
Cow position: | chr25:41098617-41097947 (view UCSC Genome Browser custom track) |
Alignm length: | 675 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 505 |
Conread position: | 211-843 |
Cow position: | chr25:33575133-33574496 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 470 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 38 |
Conread position: | 217-855 |
Cow position: | chr25:26281624-26282278 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 502 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 30 |
Conread position: | 226-829 |
Cow position: | chr25:20633375-20633988 (view UCSC Genome Browser custom track) |
Alignm length: | 616 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 346, 23 |
Conread position: | 226-843 |
Cow position: | chr25:13959679-13960304 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 21 |
Conread position: | 226-851 |
Cow position: | chr25:12939599-12938957 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 363, 30 |
Conread position: | 226-855 |
Cow position: | chr25:28862479-28863126 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 487 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 267, 23 |
Conread position: | 226-855 |
Cow position: | chr25:34503621-34502968 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 23 |
Conread position: | 226-855 |
Cow position: | chr25:35568276-35567632 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 245, 23 |
Conread position: | 226-855 |
Cow position: | chr25:35755635-35754991 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 363, 29 |
Conread position: | 226-855 |
Cow position: | chr25:41120616-41121258 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 21 |
Conread position: | 226-856 |
Cow position: | chr25:40390102-40389481 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 323, 23 |
Conread position: | 228-855 |
Cow position: | chr25:24655556-24654920 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 361, 18 |
Conread position: | 232-840 |
Cow position: | chr25:11665287-11665902 (view UCSC Genome Browser custom track) |
Alignm length: | 633 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 17 |
Conread position: | 232-851 |
Cow position: | chr25:18489666-18490315 (view UCSC Genome Browser custom track) |
Alignm length: | 652 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 528 |
Conread position: | 232-855 |
Cow position: | chr25:18190755-18190124 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 356, 16 |
Conread position: | 232-855 |
Cow position: | chr25:26781468-26780832 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 357, 17 |
Conread position: | 234-852 |
Cow position: | chr25:41136117-41135497 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 13 |
Conread position: | 234-855 |
Cow position: | chr25:11043239-11043869 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 355, 15 |
Conread position: | 236-855 |
Cow position: | chr25:29803132-29802491 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 110 |
Conread position: | 236-855 |
Cow position: | chr25:32578047-32577408 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 151 |
Conread position: | 237-852 |
Cow position: | chr25:17561652-17562290 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 173 |
Conread position: | 237-852 |
Cow position: | chr25:25480990-25480359 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 460 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 10 |
Conread position: | 237-855 |
Cow position: | chr25:7223814-7223178 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 308 |
Conread position: | 237-855 |
Cow position: | chr25:19337700-19337073 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 36 |
Conread position: | 237-855 |
Cow position: | chr25:29526244-29525613 (view UCSC Genome Browser custom track) |
Alignm length: | 633 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 106 |
Conread position: | 247-852 |
Cow position: | chr25:9395046-9395659 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 134 |
Conread position: | 248-852 |
Cow position: | chr25:25826084-25826701 (view UCSC Genome Browser custom track) |
Alignm length: | 627 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 341, 77 |
Conread position: | 251-844 |
Cow position: | chr25:18071870-18072468 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 460 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 321, 34 |
Conread position: | 253-855 |
Cow position: | chr25:34509544-34508928 (view UCSC Genome Browser custom track) |
Alignm length: | 621 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 336, 19 |
Conread position: | 259-855 |
Cow position: | chr25:34673932-34673332 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 192 |
Conread position: | 269-855 |
Cow position: | chr25:36350390-36350992 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 456 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 320, 377 |
Conread position: | 272-852 |
Cow position: | chr25:10136476-10137065 (view UCSC Genome Browser custom track) |
Alignm length: | 599 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 128 |
Conread position: | 329-852 |
Cow position: | chr25:24459993-24459470 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 152 |
Conread position: | 351-855 |
Cow position: | chr25:25509605-25510143 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 430 |
Conread position: | 354-852 |
Cow position: | chr25:41357062-41356546 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 292 |
Conread position: | 358-852 |
Cow position: | chr25:26895810-26896297 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 191, 149 |
Conread position: | 361-855 |
Cow position: | chr25:17904382-17904894 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 228, 0 |
Conread position: | 362-852 |
Cow position: | chr25:24637400-24636892 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 180, 174 |
Conread position: | 363-855 |
Cow position: | chr25:26706138-26705628 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 226, 0 |
Conread position: | 368-852 |
Cow position: | chr25:18473958-18474449 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 180, 71 |
Conread position: | 374-852 |
Cow position: | chr25:24303509-24303017 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 173, 21 |
Conread position: | 381-855 |
Cow position: | chr25:31073834-31073342 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 0 |
Conread position: | 386-851 |
Cow position: | chr25:18264964-18265438 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 13 |
Conread position: | 418-855 |
Cow position: | chr25:19139773-19139318 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 0 |
Conread position: | 422-852 |
Cow position: | chr25:13786778-13787225 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 165, 62 |
Conread position: | 425-852 |
Cow position: | chr25:13430301-13429861 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 110 |
Conread position: | 433-835 |
Cow position: | chr25:23393687-23394099 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 61 |
Conread position: | 470-852 |
Cow position: | chr25:10013211-10012811 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 177 |
Conread position: | 479-843 |
Cow position: | chr25:12082485-12082109 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 61 |
Conread position: | 479-855 |
Cow position: | chr25:32610550-32610166 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 0 |
Conread position: | 485-855 |
Cow position: | chr25:35588944-35589331 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 0 |
Conread position: | 486-852 |
Cow position: | chr25:18269333-18269728 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 196 |
Conread position: | 488-855 |
Cow position: | chr25:34164688-34164308 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 21 |
Conread position: | 513-851 |
Cow position: | chr25:2515900-2516248 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 239 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 43, 187 |
Conread position: | 519-855 |
Cow position: | chr25:19923427-19923775 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 185 |
Conread position: | 521-852 |
Cow position: | chr25:40322386-40322039 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 46 |
Conread position: | 526-840 |
Cow position: | chr25:41386181-41385859 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 224 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 83, 66 |
Conread position: | 538-852 |
Cow position: | chr25:22151024-22151356 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 539-852 |
Cow position: | chr25:18486386-18486710 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 96 |
Conread position: | 539-855 |
Cow position: | chr25:11124686-11125020 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 541-852 |
Cow position: | chr25:17554336-17554011 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 222 |
Conread position: | 546-855 |
Cow position: | chr25:39386902-39386575 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 563-855 |
Cow position: | chr25:16801397-16801694 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 6 |
Conread position: | 582-834 |
Cow position: | chr25:26850239-26849984 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 185 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 124, 66 |
Conread position: | 582-852 |
Cow position: | chr25:20075456-20075728 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 196 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 114, 100 |
Conread position: | 582-855 |
Cow position: | chr25:8655266-8655545 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 188 |
Conread position: | 582-855 |
Cow position: | chr25:28275690-28275414 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 46 |
Conread position: | 582-855 |
Cow position: | chr25:29358036-29357758 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 0 |
Conread position: | 582-855 |
Cow position: | chr25:34343930-34343654 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 34 |
Conread position: | 582-855 |
Cow position: | chr25:35445927-35446198 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 109 |
Conread position: | 586-852 |
Cow position: | chr25:4522831-4522560 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 195 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 113, 217 |
Conread position: | 586-852 |
Cow position: | chr25:23366646-23366918 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 18 |
Conread position: | 594-851 |
Cow position: | chr25:16922801-16922541 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 196 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 97, 79 |
Conread position: | 595-852 |
Cow position: | chr25:7800013-7800268 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 184 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 124, 50 |
Conread position: | 633-855 |
Cow position: | chr25:34013726-34013500 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 167 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 661-855 |
Cow position: | chr25:3688190-3688389 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 141 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 664-855 |
Cow position: | chr25:14954973-14954783 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 132 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 89, 48 |
Conread position: | 665-855 |
Cow position: | chr25:17211075-17210880 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 141 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 665-855 |
Cow position: | chr25:17808719-17808525 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 138 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 665-855 |
Cow position: | chr25:27145484-27145679 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 139 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 673-852 |
Cow position: | chr25:4858433-4858248 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 131 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 6, 0 |
Conread position: | 695-855 |
Cow position: | chr25:8934889-8935050 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 116 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 58, 0 |
Conread position: | 695-855 |
Cow position: | chr25:21120402-21120563 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 117 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 58, 0 |
Conread position: | 697-855 |
Cow position: | chr25:34122001-34121842 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 113 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 56, 0 |
Conread position: | 704-837 |
Cow position: | chr25:16309104-16308970 (view UCSC Genome Browser custom track) |
Alignm length: | 136 |
Alignm identity: | 104 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 55, 96 |
Conread position: | 704-855 |
Cow position: | chr25:21966491-21966643 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 112 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.