Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 203-852
Cow position: chr25:41098617-41097947 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 505

Conread position: 211-843
Cow position: chr25:33575133-33574496 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 38

Conread position: 217-855
Cow position: chr25:26281624-26282278 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 30

Conread position: 226-829
Cow position: chr25:20633375-20633988 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 23

Conread position: 226-843
Cow position: chr25:13959679-13960304 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-851
Cow position: chr25:12939599-12938957 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 30

Conread position: 226-855
Cow position: chr25:28862479-28863126 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 23

Conread position: 226-855
Cow position: chr25:34503621-34502968 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 23

Conread position: 226-855
Cow position: chr25:35568276-35567632 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 23

Conread position: 226-855
Cow position: chr25:35755635-35754991 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 29

Conread position: 226-855
Cow position: chr25:41120616-41121258 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-856
Cow position: chr25:40390102-40389481 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 23

Conread position: 228-855
Cow position: chr25:24655556-24654920 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 18

Conread position: 232-840
Cow position: chr25:11665287-11665902 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 17

Conread position: 232-851
Cow position: chr25:18489666-18490315 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 528

Conread position: 232-855
Cow position: chr25:18190755-18190124 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 16

Conread position: 232-855
Cow position: chr25:26781468-26780832 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 17

Conread position: 234-852
Cow position: chr25:41136117-41135497 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 13

Conread position: 234-855
Cow position: chr25:11043239-11043869 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 15

Conread position: 236-855
Cow position: chr25:29803132-29802491 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 110

Conread position: 236-855
Cow position: chr25:32578047-32577408 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 151

Conread position: 237-852
Cow position: chr25:17561652-17562290 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 173

Conread position: 237-852
Cow position: chr25:25480990-25480359 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 237-855
Cow position: chr25:7223814-7223178 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 308

Conread position: 237-855
Cow position: chr25:19337700-19337073 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 36

Conread position: 237-855
Cow position: chr25:29526244-29525613 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 106

Conread position: 247-852
Cow position: chr25:9395046-9395659 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 134

Conread position: 248-852
Cow position: chr25:25826084-25826701 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 77

Conread position: 251-844
Cow position: chr25:18071870-18072468 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 34

Conread position: 253-855
Cow position: chr25:34509544-34508928 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 19

Conread position: 259-855
Cow position: chr25:34673932-34673332 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 192

Conread position: 269-855
Cow position: chr25:36350390-36350992 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 377

Conread position: 272-852
Cow position: chr25:10136476-10137065 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 128

Conread position: 329-852
Cow position: chr25:24459993-24459470 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 152

Conread position: 351-855
Cow position: chr25:25509605-25510143 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 430

Conread position: 354-852
Cow position: chr25:41357062-41356546 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 292

Conread position: 358-852
Cow position: chr25:26895810-26896297 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 149

Conread position: 361-855
Cow position: chr25:17904382-17904894 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 0

Conread position: 362-852
Cow position: chr25:24637400-24636892 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 174

Conread position: 363-855
Cow position: chr25:26706138-26705628 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 0

Conread position: 368-852
Cow position: chr25:18473958-18474449 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 71

Conread position: 374-852
Cow position: chr25:24303509-24303017 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 21

Conread position: 381-855
Cow position: chr25:31073834-31073342 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 386-851
Cow position: chr25:18264964-18265438 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 13

Conread position: 418-855
Cow position: chr25:19139773-19139318 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 422-852
Cow position: chr25:13786778-13787225 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 62

Conread position: 425-852
Cow position: chr25:13430301-13429861 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 110

Conread position: 433-835
Cow position: chr25:23393687-23394099 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 61

Conread position: 470-852
Cow position: chr25:10013211-10012811 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 177

Conread position: 479-843
Cow position: chr25:12082485-12082109 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 61

Conread position: 479-855
Cow position: chr25:32610550-32610166 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 485-855
Cow position: chr25:35588944-35589331 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 486-852
Cow position: chr25:18269333-18269728 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 196

Conread position: 488-855
Cow position: chr25:34164688-34164308 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 513-851
Cow position: chr25:2515900-2516248 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 187

Conread position: 519-855
Cow position: chr25:19923427-19923775 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 185

Conread position: 521-852
Cow position: chr25:40322386-40322039 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 46

Conread position: 526-840
Cow position: chr25:41386181-41385859 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 83, 66

Conread position: 538-852
Cow position: chr25:22151024-22151356 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 539-852
Cow position: chr25:18486386-18486710 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 96

Conread position: 539-855
Cow position: chr25:11124686-11125020 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 541-852
Cow position: chr25:17554336-17554011 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 222

Conread position: 546-855
Cow position: chr25:39386902-39386575 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 563-855
Cow position: chr25:16801397-16801694 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 6

Conread position: 582-834
Cow position: chr25:26850239-26849984 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 124, 66

Conread position: 582-852
Cow position: chr25:20075456-20075728 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 114, 100

Conread position: 582-855
Cow position: chr25:8655266-8655545 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 188

Conread position: 582-855
Cow position: chr25:28275690-28275414 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 46

Conread position: 582-855
Cow position: chr25:29358036-29357758 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 582-855
Cow position: chr25:34343930-34343654 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 34

Conread position: 582-855
Cow position: chr25:35445927-35446198 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 109

Conread position: 586-852
Cow position: chr25:4522831-4522560 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 113, 217

Conread position: 586-852
Cow position: chr25:23366646-23366918 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 18

Conread position: 594-851
Cow position: chr25:16922801-16922541 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 97, 79

Conread position: 595-852
Cow position: chr25:7800013-7800268 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 124, 50

Conread position: 633-855
Cow position: chr25:34013726-34013500 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 0

Conread position: 661-855
Cow position: chr25:3688190-3688389 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 664-855
Cow position: chr25:14954973-14954783 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 48

Conread position: 665-855
Cow position: chr25:17211075-17210880 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 665-855
Cow position: chr25:17808719-17808525 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 665-855
Cow position: chr25:27145484-27145679 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 673-852
Cow position: chr25:4858433-4858248 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 695-855
Cow position: chr25:8934889-8935050 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 695-855
Cow position: chr25:21120402-21120563 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 697-855
Cow position: chr25:34122001-34121842 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 704-837
Cow position: chr25:16309104-16308970 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 96

Conread position: 704-855
Cow position: chr25:21966491-21966643 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.