Cow genome map
| Conread name: | Tra1-TCH01E080082 |
| Conread position: | 212-855 |
| Cow position: | chr26:13183161-13183820 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 37 |
| Conread position: | 226-834 |
| Cow position: | chr26:5679395-5680021 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 15 |
| Conread position: | 226-855 |
| Cow position: | chr26:17429611-17428965 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 23 |
| Conread position: | 230-855 |
| Cow position: | chr26:9114903-9115548 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 299 |
| Conread position: | 234-851 |
| Cow position: | chr26:4324819-4324215 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 15 |
| Conread position: | 234-855 |
| Cow position: | chr26:8872718-8873355 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 15 |
| Conread position: | 234-855 |
| Cow position: | chr26:18856993-18857625 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 100 |
| Conread position: | 234-855 |
| Cow position: | chr26:28707187-28706553 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 216 |
| Conread position: | 234-855 |
| Cow position: | chr26:35122370-35121733 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 231 |
| Conread position: | 237-852 |
| Cow position: | chr26:14488381-14487754 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 237-855 |
| Cow position: | chr26:2201407-2202038 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 171 |
| Conread position: | 237-855 |
| Cow position: | chr26:3230342-3230976 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 237-855 |
| Cow position: | chr26:12585665-12585028 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 237-855 |
| Cow position: | chr26:18804490-18803859 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 300 |
| Conread position: | 237-855 |
| Cow position: | chr26:34264837-34265474 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 242-848 |
| Cow position: | chr26:10699611-10699009 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 5 |
| Conread position: | 242-855 |
| Cow position: | chr26:26285742-26286370 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 303 |
| Conread position: | 251-855 |
| Cow position: | chr26:35191659-35191038 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 0 |
| Conread position: | 252-852 |
| Cow position: | chr26:1620542-1621154 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 82 |
| Conread position: | 253-842 |
| Cow position: | chr26:9841510-9840893 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 77 |
| Conread position: | 255-852 |
| Cow position: | chr26:799637-799037 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 269-855 |
| Cow position: | chr26:30594723-30594119 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 0 |
| Conread position: | 271-840 |
| Cow position: | chr26:27987677-27987104 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 18 |
| Conread position: | 271-852 |
| Cow position: | chr26:3699881-3700466 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 13 |
| Conread position: | 298-855 |
| Cow position: | chr26:4440818-4440256 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 187 |
| Conread position: | 322-840 |
| Cow position: | chr26:21350468-21350996 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 322-852 |
| Cow position: | chr26:14173038-14173570 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 328-852 |
| Cow position: | chr26:10490213-10490746 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 25 |
| Conread position: | 332-851 |
| Cow position: | chr26:1884977-1885516 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 7 |
| Conread position: | 334-797 |
| Cow position: | chr26:18801186-18800712 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 69 |
| Conread position: | 345-855 |
| Cow position: | chr26:3863092-3862569 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 29 |
| Conread position: | 359-842 |
| Cow position: | chr26:16781180-16781672 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 142 |
| Conread position: | 359-855 |
| Cow position: | chr26:35561065-35560553 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 473 |
| Conread position: | 361-855 |
| Cow position: | chr26:8083824-8084336 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 361-855 |
| Cow position: | chr26:22691388-22691896 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 414 |
| Conread position: | 392-855 |
| Cow position: | chr26:1343264-1342785 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 99 |
| Conread position: | 410-852 |
| Cow position: | chr26:26238049-26238506 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 236 |
| Conread position: | 433-852 |
| Cow position: | chr26:17182160-17182568 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 113 |
| Conread position: | 441-850 |
| Cow position: | chr26:16508158-16508571 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 442-834 |
| Cow position: | chr26:46572-46161 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 453-855 |
| Cow position: | chr26:8739326-8738907 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 27 |
| Conread position: | 459-851 |
| Cow position: | chr26:25392893-25393294 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 57 |
| Conread position: | 472-855 |
| Cow position: | chr26:3833143-3833544 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 476-852 |
| Cow position: | chr26:9835580-9835978 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 345 |
| Conread position: | 482-842 |
| Cow position: | chr26:19795172-19795550 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 340 |
| Conread position: | 483-852 |
| Cow position: | chr26:3186880-3187263 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 187 |
| Conread position: | 488-855 |
| Cow position: | chr26:386805-387190 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 494-855 |
| Cow position: | chr26:7559485-7559106 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 497-855 |
| Cow position: | chr26:3564906-3564529 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 498-855 |
| Cow position: | chr26:6844085-6843710 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 504-855 |
| Cow position: | chr26:15199169-15199536 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 359 |
| Conread position: | 505-850 |
| Cow position: | chr26:21858743-21859089 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 508-852 |
| Cow position: | chr26:21823445-21823098 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 179 |
| Conread position: | 510-855 |
| Cow position: | chr26:15145641-15146004 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 514-844 |
| Cow position: | chr26:20255783-20256122 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 544-855 |
| Cow position: | chr26:9069742-9070072 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 546-852 |
| Cow position: | chr26:13773236-13773558 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 268 |
| Conread position: | 547-841 |
| Cow position: | chr26:615021-614700 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 238 |
| Conread position: | 575-852 |
| Cow position: | chr26:6082899-6082619 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 115, 153 |
| Conread position: | 580-852 |
| Cow position: | chr26:18877038-18877316 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 582-843 |
| Cow position: | chr26:11369929-11370191 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 582-852 |
| Cow position: | chr26:7459732-7459455 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 582-852 |
| Cow position: | chr26:23590927-23591202 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 582-855 |
| Cow position: | chr26:20019333-20019611 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 582-855 |
| Cow position: | chr26:22831804-22831529 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 116, 57 |
| Conread position: | 587-855 |
| Cow position: | chr26:29433469-29433742 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 594-852 |
| Cow position: | chr26:799925-800185 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 600-852 |
| Cow position: | chr26:17169079-17169337 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 605-855 |
| Cow position: | chr26:3027184-3026930 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 606-855 |
| Cow position: | chr26:30786185-30786437 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 608-855 |
| Cow position: | chr26:30725660-30725407 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 619-855 |
| Cow position: | chr26:2670548-2670310 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 629-855 |
| Cow position: | chr26:30753060-30752829 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 635-855 |
| Cow position: | chr26:7677019-7677244 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 648-855 |
| Cow position: | chr26:11537122-11537335 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 652-855 |
| Cow position: | chr26:3097347-3097139 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 655-850 |
| Cow position: | chr26:16905227-16905422 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 98, 26 |
| Conread position: | 691-855 |
| Cow position: | chr26:21538739-21538903 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 693-843 |
| Cow position: | chr26:6098217-6098066 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 695-855 |
| Cow position: | chr26:581416-581255 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 697-855 |
| Cow position: | chr26:14897439-14897598 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 706-855 |
| Cow position: | chr26:15558847-15558995 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 708-852 |
| Cow position: | chr26:18933980-18933836 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 710-852 |
| Cow position: | chr26:3705930-3706073 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 710-852 |
| Cow position: | chr26:6836985-6837128 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.