Cow genome map
Conread name: | Tra1-TCH01E080082 |
Conread position: | 199-852 |
Cow position: | chr27:21451238-21451905 (view UCSC Genome Browser custom track) |
Alignm length: | 676 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 19 |
Conread position: | 226-852 |
Cow position: | chr27:3232712-3232072 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 483 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 361, 23 |
Conread position: | 226-852 |
Cow position: | chr27:4331921-4331277 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 361, 30 |
Conread position: | 226-852 |
Cow position: | chr27:15405468-15406083 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 21 |
Conread position: | 226-855 |
Cow position: | chr27:4982191-4982837 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 360, 23 |
Conread position: | 226-855 |
Cow position: | chr27:5925092-5925727 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 363, 23 |
Conread position: | 226-855 |
Cow position: | chr27:15634513-15633878 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 230, 21 |
Conread position: | 226-855 |
Cow position: | chr27:20810233-20810881 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 483 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 23 |
Conread position: | 226-855 |
Cow position: | chr27:27291213-27291858 (view UCSC Genome Browser custom track) |
Alignm length: | 653 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 29 |
Conread position: | 232-855 |
Cow position: | chr27:166094-165455 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 109 |
Conread position: | 232-855 |
Cow position: | chr27:13353133-13353771 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 74 |
Conread position: | 232-855 |
Cow position: | chr27:16031574-16030932 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 234-842 |
Cow position: | chr27:1082336-1081711 (view UCSC Genome Browser custom track) |
Alignm length: | 627 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 355, 513 |
Conread position: | 234-845 |
Cow position: | chr27:25799086-25799713 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 13 |
Conread position: | 234-851 |
Cow position: | chr27:2000670-2001306 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 234-852 |
Cow position: | chr27:8972273-8972906 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 15 |
Conread position: | 234-855 |
Cow position: | chr27:29036543-29035917 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 355, 274 |
Conread position: | 237-850 |
Cow position: | chr27:26784650-26785277 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 453 |
Conread position: | 237-852 |
Cow position: | chr27:1536012-1536631 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 452 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 47 |
Conread position: | 237-855 |
Cow position: | chr27:10578774-10579408 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 596 |
Conread position: | 247-844 |
Cow position: | chr27:26855905-26856494 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 128 |
Conread position: | 247-852 |
Cow position: | chr27:15273234-15272612 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 389 |
Conread position: | 249-851 |
Cow position: | chr27:25801364-25800750 (view UCSC Genome Browser custom track) |
Alignm length: | 618 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 92 |
Conread position: | 249-855 |
Cow position: | chr27:26329774-26330397 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 340, 272 |
Conread position: | 253-784 |
Cow position: | chr27:9255291-9254752 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 83 |
Conread position: | 253-844 |
Cow position: | chr27:27556653-27557258 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 336, 165 |
Conread position: | 253-855 |
Cow position: | chr27:24296423-24295795 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 183 |
Conread position: | 276-856 |
Cow position: | chr27:5913806-5914394 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 59 |
Conread position: | 294-852 |
Cow position: | chr27:21284344-21283788 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 105 |
Conread position: | 295-855 |
Cow position: | chr27:1188542-1189127 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 422 |
Conread position: | 306-837 |
Cow position: | chr27:23318035-23317505 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 40 |
Conread position: | 310-852 |
Cow position: | chr27:2558089-2557531 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 279, 0 |
Conread position: | 334-855 |
Cow position: | chr27:8200864-8201400 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 136 |
Conread position: | 341-855 |
Cow position: | chr27:22797725-22797194 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 314 |
Conread position: | 347-852 |
Cow position: | chr27:11489577-11490084 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 78 |
Conread position: | 350-856 |
Cow position: | chr27:8297718-8297211 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 318 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 63, 26 |
Conread position: | 359-852 |
Cow position: | chr27:5268303-5268814 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 339 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 110, 195 |
Conread position: | 368-851 |
Cow position: | chr27:344963-344469 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 221, 0 |
Conread position: | 372-851 |
Cow position: | chr27:19932598-19932096 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 45 |
Conread position: | 375-843 |
Cow position: | chr27:25784786-25784309 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 142 |
Conread position: | 381-843 |
Cow position: | chr27:19424405-19423924 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 0 |
Conread position: | 381-855 |
Cow position: | chr27:3990827-3990335 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 0 |
Conread position: | 383-852 |
Cow position: | chr27:30307293-30306807 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 146 |
Conread position: | 385-855 |
Cow position: | chr27:11480908-11481396 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 0 |
Conread position: | 392-851 |
Cow position: | chr27:14380305-14380764 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 99 |
Conread position: | 394-852 |
Cow position: | chr27:8290832-8291303 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 23 |
Conread position: | 402-855 |
Cow position: | chr27:3653705-3653235 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 53 |
Conread position: | 409-833 |
Cow position: | chr27:15872324-15871886 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 14 |
Conread position: | 419-852 |
Cow position: | chr27:4804797-4805252 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 306 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 6, 298 |
Conread position: | 425-855 |
Cow position: | chr27:12006165-12006613 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 0 |
Conread position: | 429-852 |
Cow position: | chr27:1501558-1501975 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 23 |
Conread position: | 441-846 |
Cow position: | chr27:26552349-26551936 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 65 |
Conread position: | 453-852 |
Cow position: | chr27:13183218-13182823 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 173 |
Conread position: | 471-855 |
Cow position: | chr27:30782968-30783368 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 264 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 111, 21 |
Conread position: | 472-852 |
Cow position: | chr27:9332742-9333129 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 235 |
Conread position: | 479-852 |
Cow position: | chr27:14669268-14669652 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 123 |
Conread position: | 487-855 |
Cow position: | chr27:15033812-15033426 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 0 |
Conread position: | 497-851 |
Cow position: | chr27:9263187-9262816 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 245 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 87, 24 |
Conread position: | 501-824 |
Cow position: | chr27:15697443-15697777 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 130 |
Conread position: | 511-849 |
Cow position: | chr27:11256562-11256227 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 79 |
Conread position: | 518-852 |
Cow position: | chr27:21392122-21392472 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 242 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 69, 111 |
Conread position: | 521-838 |
Cow position: | chr27:15870898-15870572 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 188 |
Conread position: | 523-855 |
Cow position: | chr27:13316678-13317020 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 112 |
Conread position: | 537-852 |
Cow position: | chr27:16788162-16787836 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 76 |
Conread position: | 539-855 |
Cow position: | chr27:22647501-22647167 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 545-855 |
Cow position: | chr27:10383585-10383896 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 227 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 44, 39 |
Conread position: | 545-855 |
Cow position: | chr27:13901261-13901589 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 554-855 |
Cow position: | chr27:9970317-9970636 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 557-852 |
Cow position: | chr27:30036035-30036333 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 142, 21 |
Conread position: | 559-852 |
Cow position: | chr27:15867133-15866841 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 88 |
Conread position: | 575-855 |
Cow position: | chr27:8959836-8959551 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 582-852 |
Cow position: | chr27:2681710-2681982 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 41 |
Conread position: | 582-855 |
Cow position: | chr27:2331690-2331968 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 598-844 |
Cow position: | chr27:4389205-4389442 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 171 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 9, 61 |
Conread position: | 606-852 |
Cow position: | chr27:12239279-12239529 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 179 |
Conread position: | 615-852 |
Cow position: | chr27:30677859-30677624 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 174 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 84, 34 |
Conread position: | 622-842 |
Cow position: | chr27:17476980-17476754 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 164 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 625-852 |
Cow position: | chr27:15099872-15100103 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 173 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 66, 181 |
Conread position: | 628-855 |
Cow position: | chr27:3649714-3649946 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 171 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 630-852 |
Cow position: | chr27:16332243-16332017 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 170 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 62, 172 |
Conread position: | 633-852 |
Cow position: | chr27:9089883-9090100 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 153 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 126, 62 |
Conread position: | 672-852 |
Cow position: | chr27:816484-816301 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 133 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 675-834 |
Cow position: | chr27:1124342-1124183 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 123 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 84, 16 |
Conread position: | 692-855 |
Cow position: | chr27:8262139-8262302 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 119 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 111, 101 |
Conread position: | 695-852 |
Cow position: | chr27:28984073-28984227 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 114 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 58, 92 |
Conread position: | 704-852 |
Cow position: | chr27:13409307-13409457 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 114 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 704-855 |
Cow position: | chr27:13422851-13422699 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 110 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 705-852 |
Cow position: | chr27:4834459-4834606 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 110 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 54, 15 |
Show alignments to all cow chromosomes.