Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 199-852
Cow position: chr27:21451238-21451905 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 19

Conread position: 226-852
Cow position: chr27:3232712-3232072 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 226-852
Cow position: chr27:4331921-4331277 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 30

Conread position: 226-852
Cow position: chr27:15405468-15406083 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-855
Cow position: chr27:4982191-4982837 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 23

Conread position: 226-855
Cow position: chr27:5925092-5925727 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chr27:15634513-15633878 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 21

Conread position: 226-855
Cow position: chr27:20810233-20810881 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 23

Conread position: 226-855
Cow position: chr27:27291213-27291858 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 29

Conread position: 232-855
Cow position: chr27:166094-165455 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 109

Conread position: 232-855
Cow position: chr27:13353133-13353771 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 74

Conread position: 232-855
Cow position: chr27:16031574-16030932 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 234-842
Cow position: chr27:1082336-1081711 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 513

Conread position: 234-845
Cow position: chr27:25799086-25799713 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 13

Conread position: 234-851
Cow position: chr27:2000670-2001306 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 234-852
Cow position: chr27:8972273-8972906 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 15

Conread position: 234-855
Cow position: chr27:29036543-29035917 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 274

Conread position: 237-850
Cow position: chr27:26784650-26785277 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 453

Conread position: 237-852
Cow position: chr27:1536012-1536631 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 47

Conread position: 237-855
Cow position: chr27:10578774-10579408 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 596

Conread position: 247-844
Cow position: chr27:26855905-26856494 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 128

Conread position: 247-852
Cow position: chr27:15273234-15272612 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 389

Conread position: 249-851
Cow position: chr27:25801364-25800750 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 92

Conread position: 249-855
Cow position: chr27:26329774-26330397 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 272

Conread position: 253-784
Cow position: chr27:9255291-9254752 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 83

Conread position: 253-844
Cow position: chr27:27556653-27557258 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 165

Conread position: 253-855
Cow position: chr27:24296423-24295795 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 183

Conread position: 276-856
Cow position: chr27:5913806-5914394 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 59

Conread position: 294-852
Cow position: chr27:21284344-21283788 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 105

Conread position: 295-855
Cow position: chr27:1188542-1189127 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 422

Conread position: 306-837
Cow position: chr27:23318035-23317505 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 40

Conread position: 310-852
Cow position: chr27:2558089-2557531 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 0

Conread position: 334-855
Cow position: chr27:8200864-8201400 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 136

Conread position: 341-855
Cow position: chr27:22797725-22797194 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 314

Conread position: 347-852
Cow position: chr27:11489577-11490084 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 78

Conread position: 350-856
Cow position: chr27:8297718-8297211 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 318
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 63, 26

Conread position: 359-852
Cow position: chr27:5268303-5268814 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 339
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 110, 195

Conread position: 368-851
Cow position: chr27:344963-344469 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 0

Conread position: 372-851
Cow position: chr27:19932598-19932096 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 45

Conread position: 375-843
Cow position: chr27:25784786-25784309 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 142

Conread position: 381-843
Cow position: chr27:19424405-19423924 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 381-855
Cow position: chr27:3990827-3990335 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 383-852
Cow position: chr27:30307293-30306807 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 146

Conread position: 385-855
Cow position: chr27:11480908-11481396 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 0

Conread position: 392-851
Cow position: chr27:14380305-14380764 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 99

Conread position: 394-852
Cow position: chr27:8290832-8291303 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 23

Conread position: 402-855
Cow position: chr27:3653705-3653235 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 53

Conread position: 409-833
Cow position: chr27:15872324-15871886 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 14

Conread position: 419-852
Cow position: chr27:4804797-4805252 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 6, 298

Conread position: 425-855
Cow position: chr27:12006165-12006613 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 429-852
Cow position: chr27:1501558-1501975 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 23

Conread position: 441-846
Cow position: chr27:26552349-26551936 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 65

Conread position: 453-852
Cow position: chr27:13183218-13182823 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 173

Conread position: 471-855
Cow position: chr27:30782968-30783368 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 264
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 111, 21

Conread position: 472-852
Cow position: chr27:9332742-9333129 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 235

Conread position: 479-852
Cow position: chr27:14669268-14669652 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 123

Conread position: 487-855
Cow position: chr27:15033812-15033426 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 497-851
Cow position: chr27:9263187-9262816 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 245
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 87, 24

Conread position: 501-824
Cow position: chr27:15697443-15697777 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 130

Conread position: 511-849
Cow position: chr27:11256562-11256227 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 79

Conread position: 518-852
Cow position: chr27:21392122-21392472 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 242
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 69, 111

Conread position: 521-838
Cow position: chr27:15870898-15870572 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 188

Conread position: 523-855
Cow position: chr27:13316678-13317020 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 112

Conread position: 537-852
Cow position: chr27:16788162-16787836 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 76

Conread position: 539-855
Cow position: chr27:22647501-22647167 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 545-855
Cow position: chr27:10383585-10383896 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 44, 39

Conread position: 545-855
Cow position: chr27:13901261-13901589 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 554-855
Cow position: chr27:9970317-9970636 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 557-852
Cow position: chr27:30036035-30036333 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 21

Conread position: 559-852
Cow position: chr27:15867133-15866841 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 88

Conread position: 575-855
Cow position: chr27:8959836-8959551 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 582-852
Cow position: chr27:2681710-2681982 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 41

Conread position: 582-855
Cow position: chr27:2331690-2331968 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 598-844
Cow position: chr27:4389205-4389442 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 61

Conread position: 606-852
Cow position: chr27:12239279-12239529 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 179

Conread position: 615-852
Cow position: chr27:30677859-30677624 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 84, 34

Conread position: 622-842
Cow position: chr27:17476980-17476754 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 0

Conread position: 625-852
Cow position: chr27:15099872-15100103 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 66, 181

Conread position: 628-855
Cow position: chr27:3649714-3649946 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 63, 0

Conread position: 630-852
Cow position: chr27:16332243-16332017 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 62, 172

Conread position: 633-852
Cow position: chr27:9089883-9090100 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 126, 62

Conread position: 672-852
Cow position: chr27:816484-816301 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 675-834
Cow position: chr27:1124342-1124183 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 16

Conread position: 692-855
Cow position: chr27:8262139-8262302 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 111, 101

Conread position: 695-852
Cow position: chr27:28984073-28984227 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 58, 92

Conread position: 704-852
Cow position: chr27:13409307-13409457 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 704-855
Cow position: chr27:13422851-13422699 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 705-852
Cow position: chr27:4834459-4834606 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 54, 15

Show alignments to all cow chromosomes.