Cow genome map
| Conread name: | Tra1-TCH01E080082 | 
| Conread position: | 217-855 | 
| Cow position: | chr3:36875326-36874665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 663 | 
| Alignm identity: | 495 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 251, 32 | 
| Conread position: | 217-856 | 
| Cow position: | chr3:24443353-24442706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 32 | 
| Conread position: | 218-852 | 
| Cow position: | chr3:26595783-26596422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 643 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 30 | 
| Conread position: | 218-852 | 
| Cow position: | chr3:50920775-50921430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 37 | 
| Conread position: | 220-852 | 
| Cow position: | chr3:20781676-20781067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 9 | 
| Conread position: | 226-832 | 
| Cow position: | chr3:74848411-74847808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 21 | 
| Conread position: | 226-844 | 
| Cow position: | chr3:53518586-53519188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 383, 23 | 
| Conread position: | 226-851 | 
| Cow position: | chr3:6896592-6897218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 435 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 21 | 
| Conread position: | 226-851 | 
| Cow position: | chr3:81100836-81101470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 644 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:13276527-13275885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:16294160-16293524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 34 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:17938252-17937625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 243, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:18814256-18814898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 644 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:19753978-19753342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:23010122-23010748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 480 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 462, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:26992878-26993517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 21 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:43190520-43189880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 361, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:56645580-56644938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 487 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:57481986-57481353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:67545836-67545247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 378, 23 | 
| Conread position: | 226-852 | 
| Cow position: | chr3:69931084-69930444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 361, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:7477171-7476524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 215, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:10243411-10244055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:21179506-21178861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:23287585-23286941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:38095650-38096296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 361, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:38869324-38869962 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 346, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:40826147-40826792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 262, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:45977252-45977895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:48603001-48603657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 658 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 332, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:49542451-49541812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 439, 30 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:49998888-49999531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 22 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:56148040-56148691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 654 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:72632820-72633468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 23 | 
| Conread position: | 226-855 | 
| Cow position: | chr3:75039092-75038446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 363, 23 | 
| Conread position: | 226-856 | 
| Cow position: | chr3:30321012-30321654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 659 | 
| Alignm identity: | 482 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 23 | 
| Conread position: | 227-855 | 
| Cow position: | chr3:6864418-6865054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 360, 22 | 
| Conread position: | 228-855 | 
| Cow position: | chr3:46505520-46506164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 478 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 359, 21 | 
| Conread position: | 230-852 | 
| Cow position: | chr3:32220484-32221103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 108 | 
| Conread position: | 232-852 | 
| Cow position: | chr3:14452414-14453051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 16 | 
| Conread position: | 232-852 | 
| Cow position: | chr3:57455726-57456337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 355, 20 | 
| Conread position: | 232-855 | 
| Cow position: | chr3:596874-597503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 470 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 50 | 
| Conread position: | 232-855 | 
| Cow position: | chr3:21593038-21593678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 515 | 
| Conread position: | 232-855 | 
| Cow position: | chr3:37971800-37972424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 15 | 
| Conread position: | 232-855 | 
| Cow position: | chr3:49908258-49907637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 357, 15 | 
| Conread position: | 233-851 | 
| Cow position: | chr3:77426460-77427066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 354, 16 | 
| Conread position: | 234-842 | 
| Cow position: | chr3:68697209-68696583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 466 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 422 | 
| Conread position: | 234-852 | 
| Cow position: | chr3:83290177-83289555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 348, 18 | 
| Conread position: | 234-855 | 
| Cow position: | chr3:2866897-2866259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 221, 15 | 
| Conread position: | 234-855 | 
| Cow position: | chr3:3653526-3652906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 353, 15 | 
| Conread position: | 234-855 | 
| Cow position: | chr3:64653425-64654064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 258 | 
| Conread position: | 235-852 | 
| Cow position: | chr3:45185223-45184595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 486 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 352, 12 | 
| Conread position: | 236-852 | 
| Cow position: | chr3:56719567-56718939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 213 | 
| Conread position: | 236-855 | 
| Cow position: | chr3:30616179-30615545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 215 | 
| Conread position: | 237-840 | 
| Cow position: | chr3:1740113-1739492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 30 | 
| Conread position: | 237-842 | 
| Cow position: | chr3:53048024-53047409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 631 | 
| Alignm identity: | 466 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 142 | 
| Conread position: | 237-850 | 
| Cow position: | chr3:32490954-32490322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 482 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 237-851 | 
| Cow position: | chr3:40048648-40049280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 237-852 | 
| Cow position: | chr3:227114-226498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 161 | 
| Conread position: | 237-852 | 
| Cow position: | chr3:34504364-34503743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 466 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 448 | 
| Conread position: | 237-852 | 
| Cow position: | chr3:37627656-37628277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 10 | 
| Conread position: | 237-852 | 
| Cow position: | chr3:56297143-56297777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 237-852 | 
| Cow position: | chr3:83767012-83767638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 0 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:15416225-15416862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:16225640-16226270 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 36 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:18862200-18862836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 480 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 195 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:20379958-20379323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 442 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:24264961-24265594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 478 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 309 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:40337384-40336750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 241 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:46858524-46857888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 265 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:49605680-49605047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 105 | 
| Conread position: | 237-855 | 
| Cow position: | chr3:53880508-53879871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 241-852 | 
| Cow position: | chr3:2904675-2904065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 193 | 
| Conread position: | 241-852 | 
| Cow position: | chr3:45615115-45615720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 40, 95 | 
| Conread position: | 247-852 | 
| Cow position: | chr3:31934564-31933945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 122 | 
| Conread position: | 247-855 | 
| Cow position: | chr3:54654412-54653779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 231 | 
| Conread position: | 249-852 | 
| Cow position: | chr3:56101048-56101644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 124 | 
| Conread position: | 249-855 | 
| Cow position: | chr3:2366118-2365514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 338, 125 | 
| Conread position: | 250-852 | 
| Cow position: | chr3:61677318-61677927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 619 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 336, 81 | 
| Conread position: | 251-855 | 
| Cow position: | chr3:37893607-37894227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 338, 233 | 
| Conread position: | 253-851 | 
| Cow position: | chr3:50461124-50461701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 146 | 
| Conread position: | 253-852 | 
| Cow position: | chr3:61173273-61173884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 28 | 
| Conread position: | 253-855 | 
| Cow position: | chr3:19883246-19883854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 216, 142 | 
| Conread position: | 253-855 | 
| Cow position: | chr3:26743095-26742477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 90 | 
| Conread position: | 253-855 | 
| Cow position: | chr3:47078838-47078217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 0 | 
| Conread position: | 253-855 | 
| Cow position: | chr3:50204321-50204960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 253-855 | 
| Cow position: | chr3:76864207-76864827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 336, 0 | 
| Conread position: | 255-855 | 
| Cow position: | chr3:65988697-65989305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 216 | 
| Conread position: | 256-852 | 
| Cow position: | chr3:64376929-64376323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 333, 33 | 
| Conread position: | 257-857 | 
| Cow position: | chr3:64171009-64171637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 95 | 
| Conread position: | 258-833 | 
| Cow position: | chr3:54087592-54087002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 603 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 43 | 
| Conread position: | 258-852 | 
| Cow position: | chr3:7856205-7856814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 294 | 
| Conread position: | 258-852 | 
| Cow position: | chr3:33326162-33326782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 39 | 
| Conread position: | 258-855 | 
| Cow position: | chr3:6688592-6689225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 575 | 
| Conread position: | 262-855 | 
| Cow position: | chr3:19880836-19881445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 327, 114 | 
| Conread position: | 267-855 | 
| Cow position: | chr3:72175520-72174910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 171 | 
| Conread position: | 271-852 | 
| Cow position: | chr3:26566575-26567168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 100 | 
| Conread position: | 271-852 | 
| Cow position: | chr3:40102053-40101466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 316, 38 | 
| Conread position: | 272-844 | 
| Cow position: | chr3:18886260-18886842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 165 | 
| Conread position: | 276-837 | 
| Cow position: | chr3:66830140-66829568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 48 | 
| Conread position: | 278-852 | 
| Cow position: | chr3:77726276-77726828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 311, 118 | 
| Conread position: | 281-855 | 
| Cow position: | chr3:64875590-64876168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 308, 80 | 
| Conread position: | 289-841 | 
| Cow position: | chr3:35342462-35343032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 300, 0 | 
| Conread position: | 289-850 | 
| Cow position: | chr3:56102554-56103130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 10 | 
| Conread position: | 289-852 | 
| Cow position: | chr3:2834727-2834146 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 300, 0 | 
| Conread position: | 289-855 | 
| Cow position: | chr3:28435887-28435303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 585 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 295, 0 | 
| Conread position: | 295-851 | 
| Cow position: | chr3:20795111-20795685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 575 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 294, 0 | 
| Conread position: | 296-855 | 
| Cow position: | chr3:7155988-7155411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 0 | 
| Conread position: | 296-855 | 
| Cow position: | chr3:14679906-14680483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 288, 0 | 
| Conread position: | 297-833 | 
| Cow position: | chr3:14284554-14285107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 225, 345 | 
| Conread position: | 298-855 | 
| Cow position: | chr3:2572348-2572923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 291, 0 | 
| Conread position: | 308-855 | 
| Cow position: | chr3:6528823-6529388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 566 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 281, 0 | 
| Conread position: | 310-852 | 
| Cow position: | chr3:15663604-15663056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 561 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 102 | 
| Conread position: | 311-855 | 
| Cow position: | chr3:823257-822694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 564 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 0 | 
| Conread position: | 314-855 | 
| Cow position: | chr3:42846190-42846739 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 275, 144 | 
| Conread position: | 316-852 | 
| Cow position: | chr3:63218793-63219322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 133 | 
| Conread position: | 318-852 | 
| Cow position: | chr3:77225576-77226114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 161 | 
| Conread position: | 324-855 | 
| Cow position: | chr3:73636728-73637275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 548 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 254, 0 | 
| Conread position: | 325-841 | 
| Cow position: | chr3:3983960-3984491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 544 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 244, 97 | 
| Conread position: | 333-851 | 
| Cow position: | chr3:12749756-12750288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 256, 452 | 
| Conread position: | 334-855 | 
| Cow position: | chr3:6837886-6838425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 255, 0 | 
| Conread position: | 345-852 | 
| Cow position: | chr3:35885246-35884728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 242, 101 | 
| Conread position: | 350-852 | 
| Cow position: | chr3:27547573-27547046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 48 | 
| Conread position: | 352-852 | 
| Cow position: | chr3:45311667-45312171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 98 | 
| Conread position: | 355-855 | 
| Cow position: | chr3:40521062-40520544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 0 | 
| Conread position: | 356-851 | 
| Cow position: | chr3:30938379-30938890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 231, 62 | 
| Conread position: | 357-852 | 
| Cow position: | chr3:24455636-24455145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 230, 24 | 
| Conread position: | 361-855 | 
| Cow position: | chr3:65473314-65473822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 228, 276 | 
| Conread position: | 370-852 | 
| Cow position: | chr3:11384209-11384705 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 263 | 
| Conread position: | 372-855 | 
| Cow position: | chr3:13035601-13035100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 0 | 
| Conread position: | 373-855 | 
| Cow position: | chr3:11417442-11417942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 216, 0 | 
| Conread position: | 382-855 | 
| Cow position: | chr3:78519952-78520443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 329 | 
| Conread position: | 392-856 | 
| Cow position: | chr3:68273755-68274237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 197, 0 | 
| Conread position: | 398-852 | 
| Cow position: | chr3:31224200-31224667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 127 | 
| Conread position: | 402-855 | 
| Cow position: | chr3:302156-302617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 253 | 
| Conread position: | 403-855 | 
| Cow position: | chr3:20475439-20475903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 266 | 
| Conread position: | 409-851 | 
| Cow position: | chr3:39327480-39327937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 220 | 
| Conread position: | 409-855 | 
| Cow position: | chr3:41019382-41018915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 0 | 
| Conread position: | 412-835 | 
| Cow position: | chr3:38862670-38863095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 127 | 
| Conread position: | 413-855 | 
| Cow position: | chr3:65084870-65085329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 334 | 
| Conread position: | 419-852 | 
| Cow position: | chr3:4039989-4039537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 55 | 
| Conread position: | 419-855 | 
| Cow position: | chr3:47986383-47986835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 170, 65 | 
| Conread position: | 421-855 | 
| Cow position: | chr3:56696792-56697233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 287 | 
| Conread position: | 422-852 | 
| Cow position: | chr3:34557425-34556985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 275 | 
| Conread position: | 422-855 | 
| Cow position: | chr3:49930780-49931231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 0 | 
| Conread position: | 423-851 | 
| Cow position: | chr3:6442015-6442460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 44 | 
| Conread position: | 423-852 | 
| Cow position: | chr3:25056635-25057073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 228 | 
| Conread position: | 423-855 | 
| Cow position: | chr3:19215862-19216296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 27 | 
| Conread position: | 423-855 | 
| Cow position: | chr3:36121121-36121571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 0 | 
| Conread position: | 424-855 | 
| Cow position: | chr3:35918511-35918955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 249 | 
| Conread position: | 426-852 | 
| Cow position: | chr3:27454984-27454544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 26 | 
| Conread position: | 426-852 | 
| Cow position: | chr3:57531079-57531525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 57, 105 | 
| Conread position: | 428-847 | 
| Cow position: | chr3:3031202-3031619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 86 | 
| Conread position: | 428-855 | 
| Cow position: | chr3:2074734-2075176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 73 | 
| Conread position: | 435-855 | 
| Cow position: | chr3:42508251-42507818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 308 | 
| Conread position: | 439-852 | 
| Cow position: | chr3:12667663-12668093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 234 | 
| Conread position: | 439-855 | 
| Cow position: | chr3:14212352-14212786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 0 | 
| Conread position: | 441-852 | 
| Cow position: | chr3:23497794-23497365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 381 | 
| Conread position: | 441-855 | 
| Cow position: | chr3:35619521-35619948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 218 | 
| Conread position: | 443-838 | 
| Cow position: | chr3:69962886-69962469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 14 | 
| Conread position: | 453-852 | 
| Cow position: | chr3:8605924-8605521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 72, 22 | 
| Conread position: | 464-852 | 
| Cow position: | chr3:19718272-19717876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 199 | 
| Conread position: | 467-852 | 
| Cow position: | chr3:49387642-49388040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 168 | 
| Conread position: | 470-855 | 
| Cow position: | chr3:73451321-73450918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 470-856 | 
| Cow position: | chr3:33125262-33124858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 471-855 | 
| Cow position: | chr3:55245537-55245939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 0 | 
| Conread position: | 474-796 | 
| Cow position: | chr3:2627180-2627500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 9e-34 | 
| Alignm gaps (pig, cow): | 92, 180 | 
| Conread position: | 476-842 | 
| Cow position: | chr3:3300634-3301024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 476-852 | 
| Cow position: | chr3:54863622-54863229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 40 | 
| Conread position: | 479-852 | 
| Cow position: | chr3:37983363-37982973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 55 | 
| Conread position: | 479-855 | 
| Cow position: | chr3:45675776-45675382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 480-852 | 
| Cow position: | chr3:56160814-56160432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 155 | 
| Conread position: | 482-852 | 
| Cow position: | chr3:42983234-42982864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 75, 170 | 
| Conread position: | 487-856 | 
| Cow position: | chr3:62794067-62793684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 185 | 
| Conread position: | 488-852 | 
| Cow position: | chr3:52257504-52257133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 200 | 
| Conread position: | 491-855 | 
| Cow position: | chr3:49416834-49416451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 493-855 | 
| Cow position: | chr3:14438969-14438592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 139 | 
| Conread position: | 500-855 | 
| Cow position: | chr3:46752872-46753242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 53 | 
| Conread position: | 506-852 | 
| Cow position: | chr3:3885168-3884794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 81, 317 | 
| Conread position: | 506-852 | 
| Cow position: | chr3:15082905-15082551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 81, 258 | 
| Conread position: | 514-855 | 
| Cow position: | chr3:42186506-42186864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 290 | 
| Conread position: | 515-855 | 
| Cow position: | chr3:6785355-6785712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 261 | 
| Conread position: | 516-855 | 
| Cow position: | chr3:26722774-26722416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 517-855 | 
| Cow position: | chr3:5886926-5887279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 160 | 
| Conread position: | 530-852 | 
| Cow position: | chr3:19795039-19794699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 287 | 
| Conread position: | 534-838 | 
| Cow position: | chr3:30622930-30623253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 543-855 | 
| Cow position: | chr3:41207483-41207170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 35 | 
| Conread position: | 545-842 | 
| Cow position: | chr3:73416065-73416381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 546-855 | 
| Cow position: | chr3:59864551-59864875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 99 | 
| Conread position: | 549-855 | 
| Cow position: | chr3:579246-579568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 549-855 | 
| Cow position: | chr3:36416811-36417135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 550-852 | 
| Cow position: | chr3:33469572-33469273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 175, 78 | 
| Conread position: | 554-855 | 
| Cow position: | chr3:75772058-75771739 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 223 | 
| Conread position: | 558-831 | 
| Cow position: | chr3:17059365-17059096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 12, 59 | 
| Conread position: | 559-850 | 
| Cow position: | chr3:23217242-23216944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 30, 158 | 
| Conread position: | 559-852 | 
| Cow position: | chr3:29582206-29582501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 143, 21 | 
| Conread position: | 560-834 | 
| Cow position: | chr3:13248926-13248649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 561-852 | 
| Cow position: | chr3:64282220-64281928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 22, 102 | 
| Conread position: | 565-852 | 
| Cow position: | chr3:14279790-14280072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 9 | 
| Conread position: | 570-855 | 
| Cow position: | chr3:28471462-28471745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 121, 22 | 
| Conread position: | 575-852 | 
| Cow position: | chr3:24275680-24275964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 132, 230 | 
| Conread position: | 578-851 | 
| Cow position: | chr3:173620-173896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 10 | 
| Conread position: | 578-852 | 
| Cow position: | chr3:70322559-70322282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 112, 74 | 
| Conread position: | 579-855 | 
| Cow position: | chr3:26891605-26891886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 582-849 | 
| Cow position: | chr3:35056099-35056366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 50 | 
| Conread position: | 582-851 | 
| Cow position: | chr3:58129208-58129483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 36, 229 | 
| Conread position: | 582-852 | 
| Cow position: | chr3:2852119-2851853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 171, 63 | 
| Conread position: | 582-852 | 
| Cow position: | chr3:7677611-7677882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 109, 39 | 
| Conread position: | 582-852 | 
| Cow position: | chr3:46682951-46683225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 109, 257 | 
| Conread position: | 582-852 | 
| Cow position: | chr3:51254518-51254788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 53, 42 | 
| Conread position: | 582-852 | 
| Cow position: | chr3:52651823-52651562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 181, 93 | 
| Conread position: | 582-852 | 
| Cow position: | chr3:77366566-77366314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 177, 52 | 
| Conread position: | 582-855 | 
| Cow position: | chr3:2117564-2117841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 194 | 
| Conread position: | 582-855 | 
| Cow position: | chr3:21779660-21779382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 582-855 | 
| Cow position: | chr3:35043277-35043555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 583-834 | 
| Cow position: | chr3:13117934-13117687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 35 | 
| Conread position: | 584-851 | 
| Cow position: | chr3:34464487-34464755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 170 | 
| Conread position: | 584-855 | 
| Cow position: | chr3:69271721-69271997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 587-855 | 
| Cow position: | chr3:65536237-65536510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 104, 0 | 
| Conread position: | 588-850 | 
| Cow position: | chr3:10371500-10371762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 103, 45 | 
| Conread position: | 589-852 | 
| Cow position: | chr3:37599861-37600123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 44 | 
| Conread position: | 589-852 | 
| Cow position: | chr3:42500195-42500455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 15, 71 | 
| Conread position: | 592-852 | 
| Cow position: | chr3:17460352-17460609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 73, 28 | 
| Conread position: | 594-852 | 
| Cow position: | chr3:4017636-4017894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 103, 40 | 
| Conread position: | 594-852 | 
| Cow position: | chr3:33254729-33254470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 15 | 
| Conread position: | 595-851 | 
| Cow position: | chr3:37451231-37451493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 105, 219 | 
| Conread position: | 595-852 | 
| Cow position: | chr3:15988070-15988332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 80, 208 | 
| Conread position: | 595-855 | 
| Cow position: | chr3:70215302-70215567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 596-852 | 
| Cow position: | chr3:58766275-58766536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 95, 202 | 
| Conread position: | 596-855 | 
| Cow position: | chr3:11784495-11784755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 102, 158 | 
| Conread position: | 597-843 | 
| Cow position: | chr3:20999939-20999688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 597-851 | 
| Cow position: | chr3:14922785-14923044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 597-855 | 
| Cow position: | chr3:14028118-14028381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 94, 0 | 
| Conread position: | 599-852 | 
| Cow position: | chr3:46006239-46006485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 200, 10 | 
| Conread position: | 605-855 | 
| Cow position: | chr3:39921804-39921550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 97, 53 | 
| Conread position: | 606-851 | 
| Cow position: | chr3:25753396-25753644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 69, 197 | 
| Conread position: | 610-844 | 
| Cow position: | chr3:60932413-60932650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 95, 53 | 
| Conread position: | 614-855 | 
| Cow position: | chr3:68500609-68500856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 615-846 | 
| Cow position: | chr3:14634080-14633855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 82, 100 | 
| Conread position: | 616-856 | 
| Cow position: | chr3:40205555-40205800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 75, 0 | 
| Conread position: | 623-844 | 
| Cow position: | chr3:74391747-74391526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 136, 164 | 
| Conread position: | 628-852 | 
| Cow position: | chr3:14613196-14613420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 72, 114 | 
| Conread position: | 628-852 | 
| Cow position: | chr3:17864593-17864822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 70, 34 | 
| Conread position: | 628-852 | 
| Cow position: | chr3:76136482-76136714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 628-855 | 
| Cow position: | chr3:12931930-12932162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 629-855 | 
| Cow position: | chr3:59118614-59118383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 634-855 | 
| Cow position: | chr3:30752754-30752979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 57, 11 | 
| Conread position: | 637-848 | 
| Cow position: | chr3:45880916-45881126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 122, 26 | 
| Conread position: | 637-855 | 
| Cow position: | chr3:68043332-68043110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 62, 97 | 
| Conread position: | 638-855 | 
| Cow position: | chr3:28765238-28765016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 638-855 | 
| Cow position: | chr3:39231885-39232107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 641-843 | 
| Cow position: | chr3:73763454-73763248 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 51, 157 | 
| Conread position: | 641-855 | 
| Cow position: | chr3:6024682-6024463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 644-855 | 
| Cow position: | chr3:36594878-36595094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 652-844 | 
| Cow position: | chr3:61538793-61538984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 107, 54 | 
| Conread position: | 652-855 | 
| Cow position: | chr3:20074275-20074483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 658-842 | 
| Cow position: | chr3:39878984-39878796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 658-851 | 
| Cow position: | chr3:54876857-54877051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 42, 145 | 
| Conread position: | 659-852 | 
| Cow position: | chr3:18184117-18184304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 144, 8 | 
| Conread position: | 660-855 | 
| Cow position: | chr3:13291301-13291500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 660-855 | 
| Cow position: | chr3:19958790-19958990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 661-855 | 
| Cow position: | chr3:64293722-64293916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 38, 73 | 
| Conread position: | 663-855 | 
| Cow position: | chr3:58336505-58336702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 664-841 | 
| Cow position: | chr3:16156723-16156904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 9e-34 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 666-855 | 
| Cow position: | chr3:29281961-29282155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 669-850 | 
| Cow position: | chr3:21082077-21082256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 90, 37 | 
| Conread position: | 669-852 | 
| Cow position: | chr3:18460490-18460303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 19, 73 | 
| Conread position: | 670-852 | 
| Cow position: | chr3:23944178-23944357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 93, 30 | 
| Conread position: | 673-852 | 
| Cow position: | chr3:48528235-48528427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 22, 138 | 
| Conread position: | 675-855 | 
| Cow position: | chr3:51256152-51256334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 677-855 | 
| Cow position: | chr3:65178590-65178766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 684-852 | 
| Cow position: | chr3:26974415-26974247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 121, 109 | 
| Conread position: | 689-852 | 
| Cow position: | chr3:9639784-9639621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 74, 29 | 
| Conread position: | 695-852 | 
| Cow position: | chr3:18252782-18252935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 68, 36 | 
| Conread position: | 695-852 | 
| Cow position: | chr3:59607527-59607684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 110, 104 | 
| Conread position: | 695-855 | 
| Cow position: | chr3:6170706-6170867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 695-855 | 
| Cow position: | chr3:11411814-11411653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 695-855 | 
| Cow position: | chr3:50217226-50217387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 695-855 | 
| Cow position: | chr3:81375017-81374856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 697-855 | 
| Cow position: | chr3:52045783-52045624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 703-852 | 
| Cow position: | chr3:60891501-60891657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 49, 97 | 
| Conread position: | 704-852 | 
| Cow position: | chr3:39970824-39970676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 55, 28 | 
| Conread position: | 704-855 | 
| Cow position: | chr3:6884388-6884541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 704-855 | 
| Cow position: | chr3:21100047-21100199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 704-855 | 
| Cow position: | chr3:45947281-45947130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 49, 77 | 
| Conread position: | 706-855 | 
| Cow position: | chr3:37020970-37020820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 714-851 | 
| Cow position: | chr3:80564054-80564192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 45, 85 | 
| Conread position: | 714-852 | 
| Cow position: | chr3:16332674-16332812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 715-843 | 
| Cow position: | chr3:37040545-37040674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 717-852 | 
| Cow position: | chr3:11446693-11446826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 726-852 | 
| Cow position: | chr3:75479127-75479253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 45, 21 | 
Show alignments to all cow chromosomes.
