Cow genome map

Conread name: Tra1-TCH01E080082

Conread position: 218-852
Cow position: chrX:26446723-26447353 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 31

Conread position: 218-855
Cow position: chrX:23021935-23022590 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 500

Conread position: 226-829
Cow position: chrX:23279658-23280275 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-833
Cow position: chrX:9095274-9095897 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 23

Conread position: 226-835
Cow position: chrX:4767337-4767948 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 23

Conread position: 226-838
Cow position: chrX:27983722-27983094 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 26

Conread position: 226-850
Cow position: chrX:20800420-20801055 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 23

Conread position: 226-851
Cow position: chrX:29099051-29099690 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-851
Cow position: chrX:33537231-33537848 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-852
Cow position: chrX:2382097-2382741 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-852
Cow position: chrX:2479997-2479349 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-852
Cow position: chrX:4995285-4995884 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 23

Conread position: 226-852
Cow position: chrX:8640419-8641062 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-852
Cow position: chrX:17610818-17610181 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 19

Conread position: 226-852
Cow position: chrX:22818706-22819352 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 26

Conread position: 226-852
Cow position: chrX:23387916-23387264 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 23

Conread position: 226-852
Cow position: chrX:23395238-23395881 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 26

Conread position: 226-852
Cow position: chrX:31201472-31202115 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 23

Conread position: 226-852
Cow position: chrX:41155943-41156585 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chrX:1549597-1550242 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 15

Conread position: 226-855
Cow position: chrX:4623322-4622676 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chrX:4906364-4905713 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 23

Conread position: 226-855
Cow position: chrX:7552170-7551524 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 29

Conread position: 226-855
Cow position: chrX:7572022-7572663 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 226-855
Cow position: chrX:16702314-16702948 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 23

Conread position: 226-855
Cow position: chrX:16710599-16711233 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 23

Conread position: 226-855
Cow position: chrX:20357368-20356718 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chrX:21226111-21226754 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 23

Conread position: 226-855
Cow position: chrX:21389209-21389855 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 29

Conread position: 226-855
Cow position: chrX:21582073-21582720 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 23

Conread position: 226-855
Cow position: chrX:26530607-26531250 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 23

Conread position: 226-855
Cow position: chrX:27317862-27318508 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 23

Conread position: 226-855
Cow position: chrX:27591389-27590753 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 23

Conread position: 226-855
Cow position: chrX:27978199-27977557 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 23

Conread position: 226-855
Cow position: chrX:30059529-30060166 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 40

Conread position: 228-837
Cow position: chrX:15122528-15121902 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 20

Conread position: 230-852
Cow position: chrX:26442613-26441984 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 232-852
Cow position: chrX:13070100-13069469 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 122

Conread position: 232-852
Cow position: chrX:13090661-13090030 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 122

Conread position: 232-855
Cow position: chrX:672355-671716 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 303

Conread position: 234-842
Cow position: chrX:8482089-8482711 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 83

Conread position: 234-843
Cow position: chrX:28606445-28605831 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 22

Conread position: 234-850
Cow position: chrX:19877478-19878085 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 188

Conread position: 234-850
Cow position: chrX:42223115-42222501 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 12

Conread position: 234-852
Cow position: chrX:28519073-28518446 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 133

Conread position: 234-852
Cow position: chrX:28587621-28588245 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 276

Conread position: 234-852
Cow position: chrX:29891746-29892361 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 13

Conread position: 234-852
Cow position: chrX:30090393-30089772 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 13

Conread position: 234-855
Cow position: chrX:11146697-11146056 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 587

Conread position: 234-855
Cow position: chrX:11976807-11976169 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 15

Conread position: 234-855
Cow position: chrX:29911979-29912616 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 399

Conread position: 235-852
Cow position: chrX:38962209-38961576 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 133

Conread position: 235-855
Cow position: chrX:3082495-3081854 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 506

Conread position: 235-855
Cow position: chrX:29908563-29907925 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 0

Conread position: 236-855
Cow position: chrX:3360461-3361098 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 280

Conread position: 236-855
Cow position: chrX:24483723-24483090 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 215

Conread position: 237-841
Cow position: chrX:34094346-34094969 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-842
Cow position: chrX:13929093-13928478 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 129

Conread position: 237-843
Cow position: chrX:10867209-10866604 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 127

Conread position: 237-844
Cow position: chrX:37851778-37852402 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 395

Conread position: 237-845
Cow position: chrX:26617771-26618391 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 137

Conread position: 237-849
Cow position: chrX:16360362-16359736 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 130

Conread position: 237-851
Cow position: chrX:6236198-6235583 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 35

Conread position: 237-851
Cow position: chrX:31979199-31978568 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 289

Conread position: 237-852
Cow position: chrX:11743912-11744541 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 140

Conread position: 237-852
Cow position: chrX:12308122-12307488 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 237-852
Cow position: chrX:17782145-17782774 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 45

Conread position: 237-852
Cow position: chrX:21494076-21494687 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 309

Conread position: 237-852
Cow position: chrX:27304571-27305203 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 299

Conread position: 237-852
Cow position: chrX:31495378-31496010 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 106

Conread position: 237-852
Cow position: chrX:39713192-39713825 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 0

Conread position: 237-855
Cow position: chrX:2560307-2559683 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 181

Conread position: 237-855
Cow position: chrX:2579061-2579696 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 105

Conread position: 237-855
Cow position: chrX:2813835-2813205 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 271

Conread position: 237-855
Cow position: chrX:3373211-3372576 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 126

Conread position: 237-855
Cow position: chrX:5332791-5332156 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 404

Conread position: 237-855
Cow position: chrX:5360650-5361287 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 237-855
Cow position: chrX:5865786-5866423 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 237-855
Cow position: chrX:7484447-7485084 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:7754547-7755182 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 552

Conread position: 237-855
Cow position: chrX:8435558-8434926 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 328

Conread position: 237-855
Cow position: chrX:9127695-9128333 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:11409694-11409057 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:12144739-12145379 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:14597497-14598123 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 272

Conread position: 237-855
Cow position: chrX:14782705-14782068 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 214

Conread position: 237-855
Cow position: chrX:15621891-15621255 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 551

Conread position: 237-855
Cow position: chrX:17054211-17054846 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 237-855
Cow position: chrX:18024352-18023715 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:18222053-18222690 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 520

Conread position: 237-855
Cow position: chrX:18657164-18656528 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 61

Conread position: 237-855
Cow position: chrX:19398418-19399055 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:19608317-19608953 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 156

Conread position: 237-855
Cow position: chrX:21343036-21343672 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 249

Conread position: 237-855
Cow position: chrX:22077700-22077065 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 410

Conread position: 237-855
Cow position: chrX:22565044-22564410 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 511

Conread position: 237-855
Cow position: chrX:22810536-22811167 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 192

Conread position: 237-855
Cow position: chrX:24412668-24413307 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 279

Conread position: 237-855
Cow position: chrX:24770216-24769580 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 553

Conread position: 237-855
Cow position: chrX:26231118-26230481 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:26274786-26275415 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 80

Conread position: 237-855
Cow position: chrX:27423628-27423006 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 99

Conread position: 237-855
Cow position: chrX:29225118-29225755 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:30053828-30053191 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:30836027-30836664 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 237-855
Cow position: chrX:30965346-30964709 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 237-855
Cow position: chrX:35532496-35533131 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 510

Conread position: 237-855
Cow position: chrX:36194736-36195369 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 517

Conread position: 237-855
Cow position: chrX:39548043-39548676 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 160

Conread position: 238-852
Cow position: chrX:36839357-36839980 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 135

Conread position: 238-855
Cow position: chrX:42732521-42733149 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 82

Conread position: 239-855
Cow position: chrX:18489083-18488437 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 166

Conread position: 241-855
Cow position: chrX:14461965-14462591 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 275

Conread position: 242-852
Cow position: chrX:34221426-34222039 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 129

Conread position: 247-852
Cow position: chrX:3406687-3406067 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 234

Conread position: 247-852
Cow position: chrX:40070953-40070337 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 161

Conread position: 247-855
Cow position: chrX:28625103-28624484 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 121

Conread position: 249-843
Cow position: chrX:2009053-2008438 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 294

Conread position: 249-855
Cow position: chrX:322569-323191 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 305

Conread position: 249-855
Cow position: chrX:27754078-27754704 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 606

Conread position: 250-852
Cow position: chrX:17891199-17891820 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 80

Conread position: 250-852
Cow position: chrX:24109943-24109331 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 161

Conread position: 250-852
Cow position: chrX:25818160-25817548 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 42

Conread position: 250-852
Cow position: chrX:26623151-26622548 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 270

Conread position: 251-855
Cow position: chrX:10529129-10528509 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 395

Conread position: 253-852
Cow position: chrX:5290027-5289412 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 89

Conread position: 253-852
Cow position: chrX:39561003-39560378 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 253-852
Cow position: chrX:41847876-41847256 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 155

Conread position: 253-855
Cow position: chrX:4342409-4343028 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 227

Conread position: 253-855
Cow position: chrX:5321056-5320440 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 88

Conread position: 253-855
Cow position: chrX:21767461-21768081 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 113

Conread position: 254-852
Cow position: chrX:24316474-24317096 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 362

Conread position: 255-855
Cow position: chrX:2047776-2048389 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 27

Conread position: 255-855
Cow position: chrX:15260956-15260342 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 0

Conread position: 259-855
Cow position: chrX:12359548-12360165 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 0

Conread position: 266-834
Cow position: chrX:31728140-31728719 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 18

Conread position: 269-855
Cow position: chrX:38231594-38230990 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 0

Conread position: 273-852
Cow position: chrX:15151977-15151401 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 65

Conread position: 274-851
Cow position: chrX:29082754-29083340 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 115

Conread position: 274-855
Cow position: chrX:23573139-23572539 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 67

Conread position: 277-851
Cow position: chrX:26507930-26508498 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 87

Conread position: 289-855
Cow position: chrX:23342298-23341714 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 307-852
Cow position: chrX:29287707-29288267 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 312

Conread position: 307-855
Cow position: chrX:27615524-27616085 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 333

Conread position: 308-855
Cow position: chrX:30200275-30199715 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 126

Conread position: 314-839
Cow position: chrX:43074605-43075144 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 70

Conread position: 318-837
Cow position: chrX:33583406-33583954 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 259

Conread position: 318-855
Cow position: chrX:5647381-5646827 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 8

Conread position: 319-852
Cow position: chrX:3650104-3649549 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 22

Conread position: 324-855
Cow position: chrX:18193418-18193967 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 329-836
Cow position: chrX:5365858-5365336 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 119

Conread position: 342-852
Cow position: chrX:25282748-25282219 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 219

Conread position: 342-852
Cow position: chrX:35287172-35287699 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 50

Conread position: 344-855
Cow position: chrX:9642680-9642155 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 135

Conread position: 350-852
Cow position: chrX:10413216-10412702 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 83

Conread position: 350-856
Cow position: chrX:14802065-14801542 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 491

Conread position: 351-844
Cow position: chrX:44193680-44193174 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 10

Conread position: 352-851
Cow position: chrX:21685366-21685892 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 193

Conread position: 352-855
Cow position: chrX:20953293-20953810 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 127

Conread position: 353-855
Cow position: chrX:6371937-6372457 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 0

Conread position: 353-855
Cow position: chrX:16085901-16085381 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 0

Conread position: 353-856
Cow position: chrX:21414624-21415145 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 0

Conread position: 356-855
Cow position: chrX:27758469-27758984 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 96

Conread position: 360-855
Cow position: chrX:29849853-29849352 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 371

Conread position: 361-855
Cow position: chrX:20020337-20020856 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 294

Conread position: 392-855
Cow position: chrX:6453494-6453974 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 152

Conread position: 393-855
Cow position: chrX:14050396-14049917 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 395-850
Cow position: chrX:4406684-4407155 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 102

Conread position: 400-850
Cow position: chrX:34442624-34442170 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 217

Conread position: 400-851
Cow position: chrX:45401198-45400744 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 193

Conread position: 400-855
Cow position: chrX:6870758-6870287 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 159

Conread position: 408-840
Cow position: chrX:17890038-17889598 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 19

Conread position: 409-855
Cow position: chrX:2103219-2103682 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 14

Conread position: 409-855
Cow position: chrX:16087310-16086846 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 423-852
Cow position: chrX:13178779-13178333 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 393

Conread position: 423-855
Cow position: chrX:16465134-16465578 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 281

Conread position: 424-855
Cow position: chrX:23452619-23452168 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 426-852
Cow position: chrX:15140700-15140262 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 145

Conread position: 428-855
Cow position: chrX:10445581-10445138 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 101

Conread position: 429-852
Cow position: chrX:45374267-45373834 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 70

Conread position: 439-852
Cow position: chrX:4751479-4751095 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 28

Conread position: 441-842
Cow position: chrX:28647424-28647006 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 50

Conread position: 442-855
Cow position: chrX:36729230-36729661 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 448-842
Cow position: chrX:47380662-47380236 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 453-855
Cow position: chrX:30455759-30455345 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 182

Conread position: 454-855
Cow position: chrX:25289821-25289402 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 459-852
Cow position: chrX:20674731-20675142 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 459-852
Cow position: chrX:40693868-40693455 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 32

Conread position: 459-855
Cow position: chrX:32643349-32643763 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 461-852
Cow position: chrX:3155713-3155311 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 126, 17

Conread position: 476-855
Cow position: chrX:5334933-5334538 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 164

Conread position: 478-852
Cow position: chrX:18243875-18244259 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 153

Conread position: 479-855
Cow position: chrX:8590463-8590859 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 483-855
Cow position: chrX:10059353-10059742 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 485-855
Cow position: chrX:17994351-17994736 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 139

Conread position: 487-856
Cow position: chrX:20792033-20792414 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 42

Conread position: 488-855
Cow position: chrX:37404337-37403957 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 216

Conread position: 495-852
Cow position: chrX:4481881-4482230 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 20

Conread position: 496-855
Cow position: chrX:26760668-26760291 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 497-852
Cow position: chrX:12310484-12310115 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 131

Conread position: 499-852
Cow position: chrX:41791816-41791441 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 502-855
Cow position: chrX:28503242-28503613 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 502-855
Cow position: chrX:35023973-35024336 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 182

Conread position: 505-851
Cow position: chrX:13430877-13430516 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 249
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 82, 130

Conread position: 505-855
Cow position: chrX:22118585-22118219 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 338

Conread position: 516-852
Cow position: chrX:47000733-47000379 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 71, 0

Conread position: 522-795
Cow position: chrX:9402803-9402527 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 17

Conread position: 528-841
Cow position: chrX:15175617-15175289 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 61, 106

Conread position: 531-852
Cow position: chrX:2500695-2500357 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 58, 273

Conread position: 532-855
Cow position: chrX:39185109-39185450 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 283

Conread position: 534-851
Cow position: chrX:40184011-40184345 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 282

Conread position: 539-841
Cow position: chrX:24279860-24280183 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 280

Conread position: 539-852
Cow position: chrX:33763088-33763419 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 543-855
Cow position: chrX:22838219-22838549 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 272

Conread position: 545-855
Cow position: chrX:32584981-32584654 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 152

Conread position: 545-855
Cow position: chrX:38150638-38150965 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 84

Conread position: 550-855
Cow position: chrX:22887616-22887936 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 204

Conread position: 551-842
Cow position: chrX:15040107-15039805 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 38, 91

Conread position: 557-851
Cow position: chrX:22308605-22308304 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 32, 74

Conread position: 557-852
Cow position: chrX:35608955-35609260 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 50, 35

Conread position: 571-852
Cow position: chrX:12465025-12465306 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 121

Conread position: 571-852
Cow position: chrX:17158818-17158537 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 121, 10

Conread position: 571-855
Cow position: chrX:2293613-2293323 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 571-857
Cow position: chrX:24825995-24826286 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 192
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 195

Conread position: 578-849
Cow position: chrX:150476-150742 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 121, 19

Conread position: 579-852
Cow position: chrX:15993441-15993718 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 177
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 111, 234

Conread position: 579-852
Cow position: chrX:40560544-40560267 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 229

Conread position: 582-842
Cow position: chrX:3397004-3396744 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 46

Conread position: 582-852
Cow position: chrX:37117908-37118184 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 92, 222

Conread position: 582-852
Cow position: chrX:39731138-39730865 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 180

Conread position: 582-855
Cow position: chrX:2486633-2486355 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 106, 0

Conread position: 582-855
Cow position: chrX:4130599-4130310 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 110, 0

Conread position: 582-855
Cow position: chrX:5280853-5280576 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 109, 180

Conread position: 582-855
Cow position: chrX:12178673-12178956 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 116, 0

Conread position: 582-855
Cow position: chrX:13205954-13206229 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 109, 192

Conread position: 582-855
Cow position: chrX:27095136-27095406 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 110, 42

Conread position: 582-855
Cow position: chrX:38217979-38218254 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 93, 36

Conread position: 583-844
Cow position: chrX:1056387-1056120 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 221

Conread position: 585-851
Cow position: chrX:39701873-39702127 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 26

Conread position: 588-849
Cow position: chrX:1947936-1947679 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 84, 0

Conread position: 588-851
Cow position: chrX:21254784-21255052 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 590-852
Cow position: chrX:28867008-28866738 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 594-852
Cow position: chrX:39559342-39559089 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 210, 156

Conread position: 594-855
Cow position: chrX:38330395-38330659 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 165

Conread position: 595-852
Cow position: chrX:39939741-39939479 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 79, 209

Conread position: 595-852
Cow position: chrX:41734171-41733916 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 32

Conread position: 595-856
Cow position: chrX:3211524-3211257 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 151

Conread position: 596-852
Cow position: chrX:22125842-22125581 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 150

Conread position: 597-855
Cow position: chrX:5392561-5392298 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 94, 0

Conread position: 598-852
Cow position: chrX:10301146-10301402 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 100, 28

Conread position: 599-842
Cow position: chrX:44901160-44901401 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 72, 96

Conread position: 601-844
Cow position: chrX:21662060-21662302 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 150

Conread position: 603-852
Cow position: chrX:19929456-19929709 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 72, 28

Conread position: 606-855
Cow position: chrX:37134610-37134356 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 610-855
Cow position: chrX:40384083-40384322 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 166
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 157

Conread position: 616-852
Cow position: chrX:6766701-6766461 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 59, 186

Conread position: 617-852
Cow position: chrX:23415661-23415421 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 46, 38

Conread position: 624-852
Cow position: chrX:40365705-40365471 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 38, 175

Conread position: 628-852
Cow position: chrX:23317364-23317138 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 68, 109

Conread position: 629-818
Cow position: chrX:17793901-17794091 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 127

Conread position: 629-851
Cow position: chrX:41527463-41527241 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 29

Conread position: 629-852
Cow position: chrX:6543313-6543536 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 10

Conread position: 629-852
Cow position: chrX:16021329-16021102 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 53, 179

Conread position: 630-852
Cow position: chrX:31372509-31372736 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 45, 207

Conread position: 630-855
Cow position: chrX:45903212-45903454 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 631-827
Cow position: chrX:45042476-45042679 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 634-855
Cow position: chrX:11565965-11566191 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 638-852
Cow position: chrX:23969408-23969625 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 130

Conread position: 642-855
Cow position: chrX:33721259-33721035 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 646-851
Cow position: chrX:27704662-27704872 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 157

Conread position: 646-855
Cow position: chrX:13031148-13030934 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 649-855
Cow position: chrX:18898583-18898372 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 650-844
Cow position: chrX:11855232-11855433 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 653-855
Cow position: chrX:36479565-36479358 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 660-855
Cow position: chrX:11950409-11950209 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 661-855
Cow position: chrX:865474-865673 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 0

Conread position: 662-852
Cow position: chrX:35847311-35847499 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 97, 13

Conread position: 664-855
Cow position: chrX:45236547-45236743 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 666-855
Cow position: chrX:14162275-14162469 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 666-855
Cow position: chrX:19109958-19109764 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 666-855
Cow position: chrX:24442156-24441962 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 666-855
Cow position: chrX:39293135-39292941 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 673-855
Cow position: chrX:26974005-26974187 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 7

Conread position: 675-852
Cow position: chrX:7805478-7805653 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 84, 18

Conread position: 675-852
Cow position: chrX:40581067-40580889 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 78, 0

Conread position: 677-855
Cow position: chrX:8529640-8529817 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 76, 14

Conread position: 684-848
Cow position: chrX:40268586-40268755 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 67, 111

Conread position: 689-852
Cow position: chrX:35388809-35388645 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 70, 111

Conread position: 695-855
Cow position: chrX:28313541-28313702 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 695-855
Cow position: chrX:34518842-34519003 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 699-852
Cow position: chrX:8104161-8104008 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 100

Conread position: 701-855
Cow position: chrX:19657619-19657774 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 708-855
Cow position: chrX:24174032-24173884 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 709-851
Cow position: chrX:12996734-12996591 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 710-852
Cow position: chrX:16688399-16688542 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 710-852
Cow position: chrX:37488860-37489003 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 89

Conread position: 710-855
Cow position: chrX:37815722-37815868 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 714-855
Cow position: chrX:2274055-2274197 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.