Cow genome map
| Conread name: | Tra1-TCH01E120085 |
| Conread position: | 1-364 |
| Cow position: | chr17:22452040-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 1-530 |
| Cow position: | chr17:22452208-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-540 |
| Cow position: | chr17:41440782-41440243 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 1-540 |
| Cow position: | chr17:41440950-41440411 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 232, 239 |
| Conread position: | 1-593 |
| Cow position: | chr17:22589761-22589171 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 1-602 |
| Cow position: | chr17:22552091-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 304 |
| Conread position: | 1-606 |
| Cow position: | chr17:22499138-22498533 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-624 |
| Cow position: | chr17:22473339-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 135 |
| Conread position: | 1-665 |
| Cow position: | chr17:22552175-22551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 1-707 |
| Cow position: | chr17:41441118-41440412 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 236 |
| Conread position: | 1-755 |
| Cow position: | chr17:22552259-22551503 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 1-770 |
| Cow position: | chr17:22499306-22498537 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-791 |
| Cow position: | chr17:22552343-22551553 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 382 |
| Conread position: | 1-791 |
| Cow position: | chr17:22552511-22551721 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 1-791 |
| Cow position: | chr17:22552595-22551805 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 1-791 |
| Cow position: | chr17:22552763-22551973 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 140 |
| Conread position: | 1-792 |
| Cow position: | chr17:22552847-22552056 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 1-792 |
| Cow position: | chr17:22553099-22552309 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 301 |
| Conread position: | 1-793 |
| Cow position: | chr17:22590097-22589305 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 123 |
| Conread position: | 1-804 |
| Cow position: | chr17:22590265-22589463 (view UCSC Genome Browser custom track) |
| Alignm length: | 804 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 793, 0 |
| Conread position: | 2-700 |
| Cow position: | chr17:22452375-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 541 |
| Conread position: | 3-790 |
| Cow position: | chr17:22590179-22589392 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 3-799 |
| Cow position: | chr17:22499388-22498592 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 652, 618 |
| Conread position: | 4-545 |
| Cow position: | chr17:44467616-44468157 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-791 |
| Cow position: | chr17:22553011-22552225 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 5-792 |
| Cow position: | chr17:22473181-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 21 |
| Conread position: | 8-668 |
| Cow position: | chr17:22473262-22473922 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 464 |
| Conread position: | 13-628 |
| Cow position: | chr17:22452280-22451665 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 300 |
| Conread position: | 19-540 |
| Cow position: | chr17:41440848-41440327 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 149, 144 |
| Conread position: | 19-719 |
| Cow position: | chr17:44467463-44468163 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 398 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 270, 280 |
| Conread position: | 22-506 |
| Cow position: | chr17:41440677-41440193 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 460, 454 |
| Conread position: | 27-512 |
| Cow position: | chr17:44467891-44468376 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 286, 282 |
| Conread position: | 32-782 |
| Cow position: | chr17:22452513-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 335 |
| Conread position: | 52-793 |
| Cow position: | chr17:22499423-22498682 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-708 |
| Cow position: | chr17:22590294-22589642 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 405 |
| Conread position: | 60-595 |
| Cow position: | chr17:44467840-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 253, 249 |
| Conread position: | 61-791 |
| Cow position: | chr17:22552367-22551637 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 62-792 |
| Cow position: | chr17:22553122-22552392 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 240 |
| Conread position: | 73-680 |
| Cow position: | chr17:44467601-44468208 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 227, 232 |
| Conread position: | 73-707 |
| Cow position: | chr17:22452388-22451754 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 409 |
| Conread position: | 78-791 |
| Cow position: | chr17:22473169-22473877 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 82-719 |
| Cow position: | chr17:44467442-44468079 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 369 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 294, 313 |
| Conread position: | 103-791 |
| Cow position: | chr17:44467379-44468067 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 384 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 598, 578 |
| Conread position: | 135-798 |
| Cow position: | chr17:22499424-22498761 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-792 |
| Cow position: | chr17:22590291-22589642 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 317 |
| Conread position: | 200-791 |
| Cow position: | chr17:22452513-22451922 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 241-794 |
| Cow position: | chr17:22452388-22451835 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 246-793 |
| Cow position: | chr17:22473169-22473711 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 392-804 |
| Cow position: | chr17:22590294-22589883 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 298, 290 |
Show alignments to all cow chromosomes.