Cow genome map

Conread name: Tra1-TCH01E120085

Conread position: 1-210
Cow position: chr22:12545650-12545858 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 206, 0

Conread position: 1-255
Cow position: chr22:11701441-11701695 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 138, 123

Conread position: 1-270
Cow position: chr22:11641198-11641467 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 137, 126

Conread position: 1-287
Cow position: chr22:11701357-11701643 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 54, 48

Conread position: 1-419
Cow position: chr22:12385326-12384908 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 135

Conread position: 1-426
Cow position: chr22:11666535-11666960 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 280
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 61, 46

Conread position: 1-427
Cow position: chr22:12475713-12475287 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 41

Conread position: 1-427
Cow position: chr22:12499546-12499972 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 41

Conread position: 1-432
Cow position: chr22:11641030-11641461 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 294

Conread position: 1-539
Cow position: chr22:14430490-14431021 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 1-541
Cow position: chr22:12419023-12418483 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 297

Conread position: 1-541
Cow position: chr22:12544669-12545209 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 321
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 126, 139

Conread position: 1-579
Cow position: chr22:12385496-12384916 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 137

Conread position: 1-590
Cow position: chr22:11640862-11641451 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 137

Conread position: 1-603
Cow position: chr22:14467979-14468581 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 303

Conread position: 1-665
Cow position: chr22:14430238-14430902 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 43

Conread position: 1-676
Cow position: chr22:12475965-12475290 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-676
Cow position: chr22:12499294-12499969 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-681
Cow position: chr22:12419208-12418511 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 651

Conread position: 1-711
Cow position: chr22:14429902-14430613 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 133

Conread position: 1-725
Cow position: chr22:14441965-14442685 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 7

Conread position: 1-726
Cow position: chr22:12431316-12430591 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 27

Conread position: 1-746
Cow position: chr22:12385664-12384917 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 215

Conread position: 1-746
Cow position: chr22:12476049-12475304 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 377

Conread position: 1-758
Cow position: chr22:12499210-12499967 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 1-759
Cow position: chr22:12399504-12398745 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 134

Conread position: 1-759
Cow position: chr22:12458520-12457762 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 471, 458

Conread position: 1-761
Cow position: chr22:11640694-11641454 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 310

Conread position: 1-764
Cow position: chr22:12431484-12430721 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 38

Conread position: 1-769
Cow position: chr22:12431736-12430968 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 125

Conread position: 1-791
Cow position: chr22:12476133-12475343 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 30

Conread position: 1-791
Cow position: chr22:12498958-12499748 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 294

Conread position: 1-791
Cow position: chr22:46654017-46654807 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 57

Conread position: 1-792
Cow position: chr22:12399756-12398965 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 471

Conread position: 1-792
Cow position: chr22:12432324-12431533 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 278

Conread position: 1-792
Cow position: chr22:12499042-12499833 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-793
Cow position: chr22:12399588-12398796 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 304

Conread position: 1-793
Cow position: chr22:12431568-12430776 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 384

Conread position: 1-793
Cow position: chr22:12431652-12430860 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 30

Conread position: 1-793
Cow position: chr22:12476217-12475425 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-793
Cow position: chr22:12499126-12499918 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-794
Cow position: chr22:12431988-12431195 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 366

Conread position: 1-794
Cow position: chr22:12432408-12431615 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 366

Conread position: 1-798
Cow position: chr22:14429650-14430447 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 277

Conread position: 1-865
Cow position: chr22:12476301-12475428 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 294

Conread position: 2-791
Cow position: chr22:12431904-12431114 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 30

Conread position: 2-791
Cow position: chr22:12432071-12431282 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 29

Conread position: 3-421
Cow position: chr22:11701275-11701693 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 128

Conread position: 3-792
Cow position: chr22:12432154-12431366 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 28

Conread position: 3-793
Cow position: chr22:12399838-12399048 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 458, 468

Conread position: 5-759
Cow position: chr22:12431396-12430642 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 641, 627

Conread position: 6-495
Cow position: chr22:11666456-11666945 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 121

Conread position: 6-578
Cow position: chr22:11701110-11701682 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 121

Conread position: 7-790
Cow position: chr22:12458598-12457815 (view UCSC Genome Browser custom track)
Alignm length: 786
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 704, 719

Conread position: 7-793
Cow position: chr22:12476379-12475593 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 716, 697

Conread position: 8-791
Cow position: chr22:12476462-12475679 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 8-791
Cow position: chr22:12498797-12499580 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 13-505
Cow position: chr22:12418927-12418435 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-791
Cow position: chr22:12498886-12499664 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 349

Conread position: 19-794
Cow position: chr22:12399900-12399131 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 610, 61

Conread position: 22-794
Cow position: chr22:12419271-12418482 (view UCSC Genome Browser custom track)
Alignm length: 790
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 49-571
Cow position: chr22:11666415-11666937 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 165

Conread position: 55-287
Cow position: chr22:12419322-12419090 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 58-799
Cow position: chr22:11640667-11641408 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 326

Conread position: 61-590
Cow position: chr22:46654329-46654859 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 80

Conread position: 61-742
Cow position: chr22:46654161-46654842 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 80

Conread position: 61-791
Cow position: chr22:12432432-12431702 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 79

Conread position: 61-792
Cow position: chr22:14441940-14442668 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 438
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 403, 410

Conread position: 62-791
Cow position: chr22:12458627-12457898 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 578, 559

Conread position: 70-791
Cow position: chr22:46654002-46654723 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 72

Conread position: 76-791
Cow position: chr22:14429641-14430356 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 193

Conread position: 83-791
Cow position: chr22:12385666-12384956 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 57

Conread position: 84-621
Cow position: chr22:11701104-11701641 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 132

Conread position: 90-603
Cow position: chr22:12419018-12418505 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 219

Conread position: 145-781
Cow position: chr22:12385688-12385050 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 329

Conread position: 146-793
Cow position: chr22:12458627-12457980 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 440, 450

Conread position: 159-794
Cow position: chr22:14429640-14430275 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 301

Conread position: 167-790
Cow position: chr22:14467977-14468600 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 383
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 64, 49

Conread position: 173-794
Cow position: chr22:14441884-14442505 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 361
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 119, 130

Conread position: 179-747
Cow position: chr22:11701115-11701683 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 125

Conread position: 192-748
Cow position: chr22:46653956-46654512 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 335
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 296, 285

Conread position: 212-791
Cow position: chr22:12419333-12418737 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 329
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 250, 0

Conread position: 227-709
Cow position: chr22:12544556-12545041 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 286
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 252

Conread position: 228-791
Cow position: chr22:14467954-14468517 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 343
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 12, 19

Conread position: 232-794
Cow position: chr22:12458625-12458063 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 235-790
Cow position: chr22:14441863-14442417 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 333
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 65, 7

Conread position: 252-750
Cow position: chr22:11666450-11666948 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 131

Conread position: 252-798
Cow position: chr22:11701104-11701650 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 132

Conread position: 297-791
Cow position: chr22:11701064-11701559 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 309
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 8, 36

Conread position: 297-798
Cow position: chr22:11666410-11666912 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 308
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 167

Conread position: 312-793
Cow position: chr22:12385689-12385206 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 300
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 219, 232

Conread position: 313-792
Cow position: chr22:12432432-12431953 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 390

Conread position: 323-586
Cow position: chr22:12545636-12545899 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 231, 220

Conread position: 331-794
Cow position: chr22:12432498-12432035 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 287
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 36

Conread position: 344-793
Cow position: chr22:12498797-12499246 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 276
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 39, 22

Conread position: 344-799
Cow position: chr22:12476462-12476007 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 279
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 39, 22

Conread position: 395-791
Cow position: chr22:12385690-12385292 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 245
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 81

Show alignments to all cow chromosomes.