Cow genome map
| Conread name: | Tra1-TCH01E120085 |
| Conread position: | 1-189 |
| Cow position: | chr23:24626564-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 1-265 |
| Cow position: | chr23:24654121-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-330 |
| Cow position: | chr23:24546990-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 40 |
| Conread position: | 1-418 |
| Cow position: | chr23:25660323-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 1-421 |
| Cow position: | chr23:24535873-24535453 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 298 |
| Conread position: | 1-440 |
| Cow position: | chr23:24639640-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-460 |
| Cow position: | chr23:24522645-24522189 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 44 |
| Conread position: | 1-495 |
| Cow position: | chr23:24547158-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-495 |
| Cow position: | chr23:25698568-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 245, 258 |
| Conread position: | 1-510 |
| Cow position: | chr23:25626538-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 47 |
| Conread position: | 1-541 |
| Cow position: | chr23:24535957-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 304 |
| Conread position: | 1-578 |
| Cow position: | chr23:24547242-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 133 |
| Conread position: | 1-593 |
| Cow position: | chr23:24560718-24560126 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-595 |
| Cow position: | chr23:24639472-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 481, 474 |
| Conread position: | 1-597 |
| Cow position: | chr23:25724039-25723445 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 328 |
| Conread position: | 1-618 |
| Cow position: | chr23:24522811-24522198 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 24 |
| Conread position: | 1-677 |
| Cow position: | chr23:24639388-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 624, 631 |
| Conread position: | 1-738 |
| Cow position: | chr23:25626286-25627020 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 235 |
| Conread position: | 1-742 |
| Cow position: | chr23:24560802-24560060 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 628, 637 |
| Conread position: | 1-791 |
| Cow position: | chr23:25626034-25626821 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 1-793 |
| Cow position: | chr23:25626202-25626991 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 3-357 |
| Cow position: | chr23:24626398-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 0 |
| Conread position: | 4-791 |
| Cow position: | chr23:25626121-25626905 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 138 |
| Conread position: | 5-440 |
| Cow position: | chr23:24626316-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 287 |
| Conread position: | 5-776 |
| Cow position: | chr23:24639308-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 6-344 |
| Cow position: | chr23:24654042-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-570 |
| Cow position: | chr23:24522722-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 121 |
| Conread position: | 8-578 |
| Cow position: | chr23:25698645-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 8-786 |
| Cow position: | chr23:24560879-24560103 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 138 |
| Conread position: | 11-543 |
| Cow position: | chr23:25660165-25660697 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-604 |
| Cow position: | chr23:24536031-24535439 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 135 |
| Conread position: | 11-791 |
| Cow position: | chr23:24639230-24640010 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 159 |
| Conread position: | 13-792 |
| Cow position: | chr23:25625962-25626737 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 19-410 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 121 |
| Conread position: | 19-662 |
| Cow position: | chr23:24547308-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 358 |
| Conread position: | 61-618 |
| Cow position: | chr23:25698676-25698118 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 76-525 |
| Cow position: | chr23:24626303-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 304 |
| Conread position: | 76-670 |
| Cow position: | chr23:25660146-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 82-726 |
| Cow position: | chr23:24522814-24522175 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 24 |
| Conread position: | 88-410 |
| Cow position: | chr23:24521971-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 90-413 |
| Cow position: | chr23:24654042-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-819 |
| Cow position: | chr23:24560879-24560153 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 275 |
| Conread position: | 95-662 |
| Cow position: | chr23:24536031-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 204 |
| Conread position: | 103-511 |
| Cow position: | chr23:25724105-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 360 |
| Conread position: | 103-752 |
| Cow position: | chr23:24547308-24546659 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 199 |
| Conread position: | 140-794 |
| Cow position: | chr23:25626005-25626656 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 243 |
| Conread position: | 145-741 |
| Cow position: | chr23:25698676-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 152-798 |
| Cow position: | chr23:24560902-24560258 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 7 |
| Conread position: | 157-791 |
| Cow position: | chr23:24522823-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 159-607 |
| Cow position: | chr23:24626302-24626748 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 206 |
| Conread position: | 159-765 |
| Cow position: | chr23:25660145-25660751 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 146 |
| Conread position: | 179-508 |
| Cow position: | chr23:24654047-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 202, 188 |
| Conread position: | 180-791 |
| Cow position: | chr23:24547315-24546704 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 187 |
| Conread position: | 181-749 |
| Cow position: | chr23:24536029-24535461 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 438 |
| Conread position: | 187-578 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 215-692 |
| Cow position: | chr23:24626274-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 0 |
| Conread position: | 251-580 |
| Cow position: | chr23:24654034-24654364 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 6, 112 |
| Conread position: | 260-794 |
| Cow position: | chr23:24536034-24535500 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 369, 383 |
| Conread position: | 271-662 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 378 |
| Conread position: | 308-791 |
| Cow position: | chr23:25698681-25698198 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 274, 279 |
| Conread position: | 327-761 |
| Cow position: | chr23:24626302-24626735 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 292 |
| Conread position: | 337-793 |
| Cow position: | chr23:24522811-24522360 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 347-791 |
| Cow position: | chr23:24536031-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 135 |
| Conread position: | 355-761 |
| Cow position: | chr23:25724105-25723700 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 121 |
| Conread position: | 383-791 |
| Cow position: | chr23:24626274-24626682 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 412-791 |
| Cow position: | chr23:25660146-25660525 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 432-621 |
| Cow position: | chr23:24521963-24521774 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 432-770 |
| Cow position: | chr23:24654048-24654386 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 210, 203 |
| Conread position: | 433-801 |
| Cow position: | chr23:25698640-25698272 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 439-819 |
| Cow position: | chr23:25724105-25723726 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 362, 0 |
| Conread position: | 502-880 |
| Cow position: | chr23:24547329-24546941 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 216, 201 |
Show alignments to all cow chromosomes.