Cow genome map

Conread name: Tra1-TCH01E120085

Conread position: 1-252
Cow position:
Alignm length: 253
Alignm identity: 171
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 60

Conread position: 1-254
Cow position:
Alignm length: 255
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 51

Conread position: 1-366
Cow position:
Alignm length: 369
Alignm identity: 243
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 61, 57

Conread position: 1-427
Cow position:
Alignm length: 427
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-448
Cow position:
Alignm length: 449
Alignm identity: 279
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 0

Conread position: 1-490
Cow position:
Alignm length: 492
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 135

Conread position: 1-496
Cow position:
Alignm length: 496
Alignm identity: 294
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 203, 0

Conread position: 1-540
Cow position:
Alignm length: 543
Alignm identity: 320
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 80, 76

Conread position: 1-578
Cow position:
Alignm length: 579
Alignm identity: 325
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 288, 295

Conread position: 1-591
Cow position:
Alignm length: 597
Alignm identity: 368
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 73, 57

Conread position: 1-602
Cow position:
Alignm length: 605
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 52

Conread position: 1-605
Cow position:
Alignm length: 605
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 592, 0

Conread position: 1-617
Cow position:
Alignm length: 618
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 571, 577

Conread position: 1-618
Cow position:
Alignm length: 625
Alignm identity: 376
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 61, 67

Conread position: 1-618
Cow position:
Alignm length: 622
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 288

Conread position: 1-621
Cow position:
Alignm length: 623
Alignm identity: 369
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 30

Conread position: 1-630
Cow position:
Alignm length: 636
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 121

Conread position: 1-654
Cow position:
Alignm length: 660
Alignm identity: 399
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 32, 27

Conread position: 1-658
Cow position:
Alignm length: 660
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 139

Conread position: 1-746
Cow position:
Alignm length: 749
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 481, 476

Conread position: 1-747
Cow position:
Alignm length: 750
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 124

Conread position: 1-749
Cow position:
Alignm length: 756
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 140

Conread position: 1-749
Cow position:
Alignm length: 754
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 49

Conread position: 1-782
Cow position:
Alignm length: 787
Alignm identity: 455
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 313, 300

Conread position: 1-782
Cow position:
Alignm length: 785
Alignm identity: 445
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 416, 411

Conread position: 1-782
Cow position:
Alignm length: 788
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 1-786
Cow position:
Alignm length: 789
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 302

Conread position: 1-791
Cow position:
Alignm length: 794
Alignm identity: 460
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 143, 139

Conread position: 1-791
Cow position:
Alignm length: 798
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 53

Conread position: 1-791
Cow position:
Alignm length: 797
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 52

Conread position: 1-792
Cow position:
Alignm length: 799
Alignm identity: 482
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 120, 59

Conread position: 1-793
Cow position:
Alignm length: 796
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 136

Conread position: 1-797
Cow position:
Alignm length: 807
Alignm identity: 490
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 139, 30

Conread position: 1-797
Cow position:
Alignm length: 800
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 564, 552

Conread position: 2-283
Cow position:
Alignm length: 283
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 143, 138

Conread position: 2-349
Cow position:
Alignm length: 349
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 3-508
Cow position:
Alignm length: 515
Alignm identity: 305
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 134, 223

Conread position: 3-597
Cow position:
Alignm length: 595
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 3-618
Cow position:
Alignm length: 616
Alignm identity: 361
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 291, 0

Conread position: 3-782
Cow position:
Alignm length: 785
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 217

Conread position: 4-331
Cow position:
Alignm length: 328
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 4-410
Cow position:
Alignm length: 408
Alignm identity: 244
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 180, 186

Conread position: 4-679
Cow position:
Alignm length: 677
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 622, 630

Conread position: 5-542
Cow position:
Alignm length: 539
Alignm identity: 313
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 263, 269

Conread position: 12-312
Cow position:
Alignm length: 301
Alignm identity: 187
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 297, 0

Conread position: 13-504
Cow position:
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-540
Cow position:
Alignm length: 523
Alignm identity: 316
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 354, 369

Conread position: 19-542
Cow position:
Alignm length: 526
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 115

Conread position: 19-588
Cow position:
Alignm length: 573
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 142

Conread position: 46-370
Cow position:
Alignm length: 331
Alignm identity: 214
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 80, 97

Conread position: 56-495
Cow position:
Alignm length: 443
Alignm identity: 266
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 237, 8

Conread position: 56-590
Cow position:
Alignm length: 536
Alignm identity: 327
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 512, 107

Conread position: 56-791
Cow position:
Alignm length: 737
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 569, 588

Conread position: 56-792
Cow position:
Alignm length: 738
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 533

Conread position: 57-617
Cow position:
Alignm length: 564
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 21

Conread position: 59-807
Cow position:
Alignm length: 756
Alignm identity: 458
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 136, 67

Conread position: 60-749
Cow position:
Alignm length: 696
Alignm identity: 409
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 75

Conread position: 61-761
Cow position:
Alignm length: 701
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 65-615
Cow position:
Alignm length: 551
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 65-804
Cow position:
Alignm length: 746
Alignm identity: 426
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 80, 56

Conread position: 72-791
Cow position:
Alignm length: 724
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 153

Conread position: 73-791
Cow position:
Alignm length: 724
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 18

Conread position: 75-791
Cow position:
Alignm length: 717
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 76-689
Cow position:
Alignm length: 619
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 216

Conread position: 82-707
Cow position:
Alignm length: 628
Alignm identity: 365
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 44, 49

Conread position: 83-602
Cow position:
Alignm length: 521
Alignm identity: 304
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 398, 392

Conread position: 84-788
Cow position:
Alignm length: 706
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 649, 637

Conread position: 84-792
Cow position:
Alignm length: 718
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 8

Conread position: 87-509
Cow position:
Alignm length: 426
Alignm identity: 252
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 218, 204

Conread position: 97-588
Cow position:
Alignm length: 492
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 100-328
Cow position:
Alignm length: 229
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 103-605
Cow position:
Alignm length: 506
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 37

Conread position: 103-630
Cow position:
Alignm length: 529
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 142

Conread position: 133-370
Cow position:
Alignm length: 238
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 134-573
Cow position:
Alignm length: 444
Alignm identity: 272
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 113, 75

Conread position: 134-706
Cow position:
Alignm length: 573
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 0

Conread position: 134-793
Cow position:
Alignm length: 660
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 134-819
Cow position:
Alignm length: 689
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 31

Conread position: 144-792
Cow position:
Alignm length: 658
Alignm identity: 392
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 125, 131

Conread position: 147-790
Cow position:
Alignm length: 648
Alignm identity: 377
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 146, 156

Conread position: 159-769
Cow position:
Alignm length: 614
Alignm identity: 360
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 134, 143

Conread position: 166-596
Cow position:
Alignm length: 432
Alignm identity: 266
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 365, 372

Conread position: 166-793
Cow position:
Alignm length: 630
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 310

Conread position: 172-578
Cow position:
Alignm length: 408
Alignm identity: 250
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 180, 186

Conread position: 180-678
Cow position:
Alignm length: 501
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 456, 464

Conread position: 181-542
Cow position:
Alignm length: 364
Alignm identity: 223
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 112, 121

Conread position: 212-792
Cow position:
Alignm length: 586
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 37

Conread position: 232-462
Cow position:
Alignm length: 233
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 149, 130

Conread position: 250-579
Cow position:
Alignm length: 331
Alignm identity: 203
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 226, 232

Conread position: 253-748
Cow position:
Alignm length: 496
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 259-791
Cow position:
Alignm length: 534
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 154

Conread position: 274-590
Cow position:
Alignm length: 319
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 22

Conread position: 304-791
Cow position:
Alignm length: 491
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 168

Conread position: 312-748
Cow position:
Alignm length: 438
Alignm identity: 261
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 7, 26

Conread position: 322-791
Cow position:
Alignm length: 470
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 327-748
Cow position:
Alignm length: 424
Alignm identity: 264
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 217, 229

Conread position: 337-782
Cow position:
Alignm length: 447
Alignm identity: 270
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 340-752
Cow position:
Alignm length: 417
Alignm identity: 250
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 180, 186

Conread position: 412-792
Cow position:
Alignm length: 384
Alignm identity: 233
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 221, 216

Conread position: 415-793
Cow position:
Alignm length: 379
Alignm identity: 234
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 190, 0

Conread position: 436-629
Cow position:
Alignm length: 196
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 144, 107

Conread position: 470-799
Cow position:
Alignm length: 330
Alignm identity: 201
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.