Cow genome map
| Conread name: | Tra1-TCH01E120085 |
| Conread position: | 1-340 |
| Cow position: | chr28:9299224-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 1-371 |
| Cow position: | chr28:33210231-33210602 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 331, 0 |
| Conread position: | 1-371 |
| Cow position: | chr28:34679473-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 86 |
| Conread position: | 1-406 |
| Cow position: | chr28:34673526-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 153, 147 |
| Conread position: | 1-460 |
| Cow position: | chr28:9290175-9290628 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 33 |
| Conread position: | 1-460 |
| Cow position: | chr28:34673442-34673901 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 193, 201 |
| Conread position: | 1-513 |
| Cow position: | chr28:9253106-9253618 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 124 |
| Conread position: | 1-587 |
| Cow position: | chr28:34695999-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 1-590 |
| Cow position: | chr28:9253022-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 1-602 |
| Cow position: | chr28:11334134-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 359 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 530, 542 |
| Conread position: | 1-606 |
| Cow position: | chr28:7810351-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 187 |
| Conread position: | 1-617 |
| Cow position: | chr28:7758175-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 351 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 292, 147 |
| Conread position: | 1-619 |
| Cow position: | chr28:34695915-34696533 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 1-639 |
| Cow position: | chr28:7757755-7758392 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-665 |
| Cow position: | chr28:9252938-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 134 |
| Conread position: | 1-748 |
| Cow position: | chr28:7757587-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 298 |
| Conread position: | 1-764 |
| Cow position: | chr28:11333966-11333203 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 303 |
| Conread position: | 1-778 |
| Cow position: | chr28:7758007-7758768 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 1-792 |
| Cow position: | chr28:7757923-7758698 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 123 |
| Conread position: | 1-795 |
| Cow position: | chr28:7757419-7758214 (view UCSC Genome Browser custom track) |
| Alignm length: | 804 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 2-589 |
| Cow position: | chr28:9298988-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 44 |
| Conread position: | 2-790 |
| Cow position: | chr28:9289844-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 42 |
| Conread position: | 3-792 |
| Cow position: | chr28:9298739-9299511 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 615, 75 |
| Conread position: | 4-793 |
| Cow position: | chr28:9252775-9253562 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 118 |
| Conread position: | 5-573 |
| Cow position: | chr28:34673362-34673930 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 118, 139 |
| Conread position: | 7-710 |
| Cow position: | chr28:11334212-11333509 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 524, 531 |
| Conread position: | 8-541 |
| Cow position: | chr28:7758334-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 117 |
| Conread position: | 13-756 |
| Cow position: | chr28:34695843-34696586 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 127 |
| Conread position: | 14-455 |
| Cow position: | chr28:34679544-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 21-509 |
| Cow position: | chr28:33210170-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 395, 31 |
| Conread position: | 46-746 |
| Cow position: | chr28:9298865-9299549 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 133 |
| Conread position: | 46-748 |
| Cow position: | chr28:9252898-9253601 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 57-791 |
| Cow position: | chr28:34695719-34696453 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 431 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 68, 91 |
| Conread position: | 59-399 |
| Cow position: | chr28:7809809-7810143 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 60-780 |
| Cow position: | chr28:11334243-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 61-621 |
| Cow position: | chr28:9290067-9290621 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 65-742 |
| Cow position: | chr28:9289984-9290658 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 78-539 |
| Cow position: | chr28:9299217-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 81-791 |
| Cow position: | chr28:9252519-9253224 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 413 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 83-460 |
| Cow position: | chr28:34673356-34673733 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-805 |
| Cow position: | chr28:7757334-7758054 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 212 |
| Conread position: | 133-791 |
| Cow position: | chr28:9289807-9290456 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 391 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 264, 76 |
| Conread position: | 135-769 |
| Cow position: | chr28:7810317-7810942 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 169 |
| Conread position: | 160-746 |
| Cow position: | chr28:9298561-9299143 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 165-594 |
| Cow position: | chr28:33210227-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 423 |
| Conread position: | 177-603 |
| Cow position: | chr28:34673366-34673792 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 313, 307 |
| Conread position: | 187-804 |
| Cow position: | chr28:7810285-7810892 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 381 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 118, 98 |
| Conread position: | 250-759 |
| Cow position: | chr28:7758324-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 131, 112 |
| Conread position: | 251-703 |
| Cow position: | chr28:34673356-34673808 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 38, 48 |
| Conread position: | 259-786 |
| Cow position: | chr28:11334212-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 271-782 |
| Cow position: | chr28:7810285-7810787 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 308-792 |
| Cow position: | chr28:34679584-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 337-707 |
| Cow position: | chr28:33210231-33210602 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 336, 0 |
| Conread position: | 343-819 |
| Cow position: | chr28:11334212-11333737 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 368, 375 |
Show alignments to all cow chromosomes.