Cow genome map
| Conread name: | Tra1-TCH01E120085 |
| Conread position: | 1-190 |
| Cow position: | chr7:1438504-1438693 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-204 |
| Cow position: | chr7:18390585-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 140 |
| Conread position: | 1-287 |
| Cow position: | chr7:1015194-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 131, 136 |
| Conread position: | 1-289 |
| Cow position: | chr7:1439977-1440265 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 1-426 |
| Cow position: | chr7:11434645-11434227 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 44 |
| Conread position: | 1-455 |
| Cow position: | chr7:18390333-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 298 |
| Conread position: | 1-486 |
| Cow position: | chr7:28846594-28847079 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 1-512 |
| Cow position: | chr7:1014942-1015453 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 304 |
| Conread position: | 1-584 |
| Cow position: | chr7:11601016-11600433 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-617 |
| Cow position: | chr7:1014774-1015390 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 476 |
| Conread position: | 1-617 |
| Cow position: | chr7:8277935-8278549 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 380 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 1-620 |
| Cow position: | chr7:18390165-18390784 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 295 |
| Conread position: | 1-621 |
| Cow position: | chr7:8278103-8278714 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 138, 145 |
| Conread position: | 1-627 |
| Cow position: | chr7:8243473-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 1-671 |
| Cow position: | chr7:11601100-11600429 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 128 |
| Conread position: | 1-708 |
| Cow position: | chr7:11601184-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 635, 646 |
| Conread position: | 1-759 |
| Cow position: | chr7:42879021-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 644, 630 |
| Conread position: | 1-776 |
| Cow position: | chr7:8325408-8326190 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 1-789 |
| Cow position: | chr7:8277263-8278051 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 145 |
| Conread position: | 1-790 |
| Cow position: | chr7:8242886-8243674 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 141 |
| Conread position: | 1-791 |
| Cow position: | chr7:1014276-1015060 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 374 |
| Conread position: | 1-791 |
| Cow position: | chr7:3179784-3180574 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 124 |
| Conread position: | 1-791 |
| Cow position: | chr7:3180036-3180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 122 |
| Conread position: | 1-791 |
| Cow position: | chr7:8324820-8325610 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 1-792 |
| Cow position: | chr7:1014444-1015229 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 210 |
| Conread position: | 1-792 |
| Cow position: | chr7:1439473-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 115 |
| Conread position: | 1-792 |
| Cow position: | chr7:42879189-42878398 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 1-794 |
| Cow position: | chr7:8243054-8243846 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 1-794 |
| Cow position: | chr7:8325156-8325949 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 134 |
| Conread position: | 1-794 |
| Cow position: | chr7:42879105-42878312 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 298 |
| Conread position: | 1-805 |
| Cow position: | chr7:42879273-42878470 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 289 |
| Conread position: | 3-540 |
| Cow position: | chr7:18390251-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 120 |
| Conread position: | 3-543 |
| Cow position: | chr7:11434811-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 3-768 |
| Cow position: | chr7:8277853-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 464 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 3-791 |
| Cow position: | chr7:3179954-3180742 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 133 |
| Conread position: | 3-791 |
| Cow position: | chr7:8243140-8243927 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 3-793 |
| Cow position: | chr7:8325242-8326032 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 4-578 |
| Cow position: | chr7:12293438-12294012 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 475, 464 |
| Conread position: | 5-791 |
| Cow position: | chr7:1014694-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 138 |
| Conread position: | 11-791 |
| Cow position: | chr7:3179710-3180490 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 293 |
| Conread position: | 13-789 |
| Cow position: | chr7:8277527-8278303 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 13-793 |
| Cow position: | chr7:3179880-3180660 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 19-621 |
| Cow position: | chr7:18390099-18390701 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 44-539 |
| Cow position: | chr7:12293310-12293805 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 87 |
| Conread position: | 46-791 |
| Cow position: | chr7:3179661-3180406 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 52-533 |
| Cow position: | chr7:28846561-28847042 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 56-791 |
| Cow position: | chr7:18390052-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 61-791 |
| Cow position: | chr7:11601208-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 232 |
| Conread position: | 62-791 |
| Cow position: | chr7:11434990-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 65-791 |
| Cow position: | chr7:1014670-1015396 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 78-791 |
| Cow position: | chr7:8277256-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 574, 536 |
| Conread position: | 82-791 |
| Cow position: | chr7:42879276-42878567 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 138 |
| Conread position: | 83-791 |
| Cow position: | chr7:18389995-18390703 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 376 |
| Conread position: | 84-791 |
| Cow position: | chr7:8324735-8325442 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 130 |
| Conread position: | 88-791 |
| Cow position: | chr7:8242805-8243507 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 95-632 |
| Cow position: | chr7:28846436-28846972 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 112-792 |
| Cow position: | chr7:1439412-1440095 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 420 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 137-793 |
| Cow position: | chr7:11601216-11600560 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-526 |
| Cow position: | chr7:1438312-1438693 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-804 |
| Cow position: | chr7:42879296-42878639 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 150-781 |
| Cow position: | chr7:1014257-1014882 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 393 |
| Conread position: | 163-794 |
| Cow position: | chr7:8277257-8277888 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 171-791 |
| Cow position: | chr7:8242804-8243423 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 372 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 194-791 |
| Cow position: | chr7:1014217-1014808 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 366 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 106, 111 |
| Conread position: | 212-793 |
| Cow position: | chr7:3179743-3180324 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 166 |
| Conread position: | 213-793 |
| Cow position: | chr7:3179660-3180240 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 424-794 |
| Cow position: | chr7:8242805-8243175 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 58 |
Show alignments to all cow chromosomes.