Cow genome map
| Conread name: | Tra1-TCH01E120085 |
| Conread position: | 1-352 |
| Cow position: | chrX:29045005-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 1-359 |
| Cow position: | chrX:25310229-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 1-374 |
| Cow position: | chrX:29045824-29045451 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 1-514 |
| Cow position: | chrX:29045173-29044659 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 135 |
| Conread position: | 1-546 |
| Cow position: | chrX:25324744-25324203 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 366 |
| Conread position: | 1-557 |
| Cow position: | chrX:14181555-14180999 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 1-602 |
| Cow position: | chrX:13826777-13826176 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 131 |
| Conread position: | 1-621 |
| Cow position: | chrX:14181639-14181019 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 374 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 1-624 |
| Cow position: | chrX:12627442-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 376 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 315, 61 |
| Conread position: | 1-679 |
| Cow position: | chrX:25309893-25310571 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 135 |
| Conread position: | 1-760 |
| Cow position: | chrX:25324996-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 397 |
| Conread position: | 1-793 |
| Cow position: | chrX:25325837-25325044 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 31 |
| Conread position: | 1-794 |
| Cow position: | chrX:25325500-25324707 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 366 |
| Conread position: | 1-794 |
| Cow position: | chrX:25325584-25324791 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 297 |
| Conread position: | 1-819 |
| Cow position: | chrX:25325080-25324263 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 304 |
| Conread position: | 1-819 |
| Cow position: | chrX:25325332-25324515 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 302 |
| Conread position: | 1-819 |
| Cow position: | chrX:25325752-25324935 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 147 |
| Conread position: | 3-269 |
| Cow position: | chrX:29044919-29044653 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 3-748 |
| Cow position: | chrX:25309811-25310556 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 301 |
| Conread position: | 4-495 |
| Cow position: | chrX:14181384-14180893 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 297 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 453, 474 |
| Conread position: | 6-797 |
| Cow position: | chrX:25309730-25310522 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 298 |
| Conread position: | 7-604 |
| Cow position: | chrX:29045251-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 298 |
| Conread position: | 7-822 |
| Cow position: | chrX:12627280-12628095 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 481 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 9-668 |
| Cow position: | chrX:29045333-29044674 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 12-621 |
| Cow position: | chrX:13826934-13826325 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 126 |
| Conread position: | 59-496 |
| Cow position: | chrX:14181413-14180976 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 231, 239 |
| Conread position: | 59-620 |
| Cow position: | chrX:13826803-13826242 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 349 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 137, 163 |
| Conread position: | 61-791 |
| Cow position: | chrX:12627248-12627978 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 426 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 253 |
| Conread position: | 62-773 |
| Cow position: | chrX:29045361-29044653 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 67-791 |
| Cow position: | chrX:25309707-25310431 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 77-537 |
| Cow position: | chrX:29045832-29045372 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 82-765 |
| Cow position: | chrX:13826948-13826265 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 411 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 140 |
| Conread position: | 82-804 |
| Cow position: | chrX:25325587-25324866 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 719, 0 |
| Conread position: | 85-707 |
| Cow position: | chrX:14181639-14181017 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 367 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 189, 185 |
| Conread position: | 140-539 |
| Cow position: | chrX:29045853-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 146-819 |
| Cow position: | chrX:29045361-29044692 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 30 |
| Conread position: | 217-812 |
| Cow position: | chrX:25309689-25310283 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 427 |
| Conread position: | 241-794 |
| Cow position: | chrX:25325764-25325211 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 137, 156 |
| Conread position: | 329-709 |
| Cow position: | chrX:29045832-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 348-791 |
| Cow position: | chrX:13826934-13826491 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 110, 126 |
Show alignments to all cow chromosomes.