Cow genome map

Conread name: Tra1-TCH01F040078

Conread position: 69-247
Cow position: chr12:17616955-17617135 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 6

Conread position: 520-801
Cow position: chr12:3180578-3180867 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 524-800
Cow position: chr12:21432515-21432797 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 527-801
Cow position: chr12:32011600-32011319 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 15, 0

Conread position: 527-802
Cow position: chr12:5713142-5713426 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 6

Conread position: 529-805
Cow position: chr12:12178056-12177779 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 14, 64

Conread position: 530-799
Cow position: chr12:48416566-48416286 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 204
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 11, 99

Conread position: 530-801
Cow position: chr12:27994281-27994559 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 540-735
Cow position: chr12:1408009-1408210 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 540-752
Cow position: chr12:35367592-35367809 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 21, 119

Conread position: 540-755
Cow position: chr12:21089748-21089527 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 0

Conread position: 540-781
Cow position: chr12:9988495-9988249 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 130

Conread position: 540-782
Cow position: chr12:36213469-36213717 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 0

Conread position: 540-786
Cow position: chr12:21888851-21888599 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 540-789
Cow position: chr12:30686933-30687188 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 540-795
Cow position: chr12:250127-249868 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 14, 30

Conread position: 540-795
Cow position: chr12:24029287-24029030 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 21, 40

Conread position: 540-795
Cow position: chr12:24205726-24205982 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 51

Conread position: 540-795
Cow position: chr12:25148426-25148166 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 147, 0

Conread position: 540-799
Cow position: chr12:21075027-21075284 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 138

Conread position: 540-800
Cow position: chr12:46111926-46111660 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:1056316-1056050 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 13, 82

Conread position: 540-801
Cow position: chr12:1405640-1405905 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:3717082-3716815 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:5110869-5110606 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 30

Conread position: 540-801
Cow position: chr12:8839445-8839712 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:10931276-10931544 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:11101439-11101706 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:11582361-11582619 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 15

Conread position: 540-801
Cow position: chr12:12754965-12754699 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:12928715-12928452 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 40

Conread position: 540-801
Cow position: chr12:13043050-13042783 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 540-801
Cow position: chr12:14568623-14568366 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 105

Conread position: 540-801
Cow position: chr12:15720371-15720108 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 116

Conread position: 540-801
Cow position: chr12:17718492-17718757 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 240

Conread position: 540-801
Cow position: chr12:18585864-18586131 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:20459528-20459264 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 14, 117

Conread position: 540-801
Cow position: chr12:21211975-21212241 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 14, 194

Conread position: 540-801
Cow position: chr12:21251122-21250856 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 153, 221

Conread position: 540-801
Cow position: chr12:22202490-22202223 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:22480316-22480583 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:22517661-22517396 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 14, 111

Conread position: 540-801
Cow position: chr12:22979700-22979435 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 51

Conread position: 540-801
Cow position: chr12:23138137-23137870 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:25097074-25096809 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 21, 249

Conread position: 540-801
Cow position: chr12:25266142-25265875 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 14, 223

Conread position: 540-801
Cow position: chr12:25313522-25313255 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 0

Conread position: 540-801
Cow position: chr12:27506458-27506191 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:28013040-28012773 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:28763822-28763557 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 209

Conread position: 540-801
Cow position: chr12:32147438-32147171 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 540-801
Cow position: chr12:32656740-32657007 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:36445578-36445844 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:37562198-37562462 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 14, 51

Conread position: 540-801
Cow position: chr12:38893555-38893822 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr12:41338041-41337774 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-802
Cow position: chr12:21718986-21718713 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 124

Conread position: 540-802
Cow position: chr12:33296824-33297089 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 14, 103

Conread position: 541-795
Cow position: chr12:21314237-21313979 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 51

Conread position: 541-801
Cow position: chr12:34176747-34177013 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 222

Conread position: 541-801
Cow position: chr12:36287820-36287557 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 50

Conread position: 542-749
Cow position: chr12:21862230-21862031 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 39

Conread position: 542-789
Cow position: chr12:21484605-21484848 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 166, 72

Conread position: 542-792
Cow position: chr12:17969181-17969418 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 48

Conread position: 542-792
Cow position: chr12:19155666-19155412 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 50

Conread position: 542-798
Cow position: chr12:28571577-28571831 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 19, 103

Conread position: 542-800
Cow position: chr12:15939668-15939421 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 38

Conread position: 542-801
Cow position: chr12:1093095-1093358 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 10, 46

Conread position: 542-801
Cow position: chr12:15820925-15821179 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 12, 49

Conread position: 542-801
Cow position: chr12:19871405-19871673 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 542-801
Cow position: chr12:26870063-26869798 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 120

Conread position: 545-801
Cow position: chr12:1476465-1476204 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 17, 227

Conread position: 550-801
Cow position: chr12:5226436-5226692 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 550-801
Cow position: chr12:8172112-8172363 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 137, 7

Conread position: 550-801
Cow position: chr12:17663165-17663407 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 167
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 550-801
Cow position: chr12:41973570-41973315 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 228

Conread position: 550-801
Cow position: chr12:42604980-42604726 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 134, 100

Conread position: 551-801
Cow position: chr12:36569141-36568887 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 100, 0

Conread position: 553-801
Cow position: chr12:3070063-3070316 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 137, 47

Conread position: 560-747
Cow position: chr12:39283305-39283112 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 128, 0

Conread position: 561-792
Cow position: chr12:23474966-23475200 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 126, 89

Conread position: 572-801
Cow position: chr12:6186922-6186691 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 115, 70

Conread position: 573-801
Cow position: chr12:3364112-3364345 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 114, 0

Conread position: 582-801
Cow position: chr12:21946231-21946447 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 128, 67

Conread position: 591-794
Cow position: chr12:1345316-1345529 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 96, 0

Conread position: 591-801
Cow position: chr12:23441696-23441481 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 100, 0

Conread position: 593-802
Cow position: chr12:21557195-21557406 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 97, 18

Conread position: 604-801
Cow position: chr12:19861956-19862145 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 83, 0

Conread position: 613-801
Cow position: chr12:32088504-32088697 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 82, 0

Conread position: 616-801
Cow position: chr12:10790978-10790788 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 71, 0

Conread position: 627-804
Cow position: chr12:10490129-10490309 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 60, 104

Conread position: 643-801
Cow position: chr12:29485364-29485201 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 7

Conread position: 662-795
Cow position: chr12:5904846-5904984 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 665-798
Cow position: chr12:5800097-5800234 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 110

Show alignments to all cow chromosomes.