Cow genome map

Conread name: Tra1-TCH01F040078

Conread position: 516-798
Cow position: chr17:731446-731165 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 17

Conread position: 516-801
Cow position: chr17:15438836-15439127 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 520-792
Cow position: chr17:29156419-29156700 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 520-795
Cow position: chr17:2839074-2839348 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 13

Conread position: 524-801
Cow position: chr17:15809040-15809323 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 18, 9

Conread position: 527-801
Cow position: chr17:3780711-3780986 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 184
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 78

Conread position: 527-801
Cow position: chr17:21766953-21767226 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 15, 8

Conread position: 529-795
Cow position: chr17:2201355-2201627 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 530-799
Cow position: chr17:29471497-29471764 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 12, 62

Conread position: 530-801
Cow position: chr17:4085125-4085399 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 12, 229

Conread position: 538-798
Cow position: chr17:20094091-20093827 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 538-801
Cow position: chr17:2244999-2244736 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 16, 137

Conread position: 539-801
Cow position: chr17:2583460-2583723 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 168

Conread position: 540-779
Cow position: chr17:4063409-4063652 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 29

Conread position: 540-781
Cow position: chr17:20078598-20078359 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 40

Conread position: 540-789
Cow position: chr17:138677-138926 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 145

Conread position: 540-795
Cow position: chr17:1569145-1568891 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 14, 49

Conread position: 540-795
Cow position: chr17:31232746-31233000 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 21, 79

Conread position: 540-796
Cow position: chr17:2177049-2177310 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 540-798
Cow position: chr17:8222774-8223038 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr17:147991-148242 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 14, 30

Conread position: 540-801
Cow position: chr17:184216-184483 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr17:2265258-2265524 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 75

Conread position: 540-801
Cow position: chr17:6262925-6263190 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 110

Conread position: 540-801
Cow position: chr17:8212130-8212392 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 14, 47

Conread position: 540-801
Cow position: chr17:11084066-11083799 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr17:14006496-14006750 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 55

Conread position: 540-801
Cow position: chr17:14242898-14243162 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 147, 15

Conread position: 540-801
Cow position: chr17:15853803-15854071 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr17:16447409-16447146 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 30

Conread position: 540-801
Cow position: chr17:16870208-16869961 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 46

Conread position: 540-801
Cow position: chr17:16903653-16903915 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 21, 40

Conread position: 540-801
Cow position: chr17:17128074-17128340 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 21, 0

Conread position: 540-801
Cow position: chr17:17957666-17957933 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 540-801
Cow position: chr17:18100005-18099738 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 540-801
Cow position: chr17:18123601-18123340 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 14, 105

Conread position: 540-801
Cow position: chr17:18200806-18201057 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 75

Conread position: 540-801
Cow position: chr17:24785259-24785526 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr17:25739365-25739632 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 540-801
Cow position: chr17:29824892-29824624 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 75

Conread position: 540-801
Cow position: chr17:29950284-29950548 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 40

Conread position: 540-801
Cow position: chr17:37415819-37415556 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 185

Conread position: 540-801
Cow position: chr17:40810820-40811079 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 207

Conread position: 540-801
Cow position: chr17:43991557-43991820 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 14, 150

Conread position: 540-802
Cow position: chr17:16855028-16854760 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 14, 48

Conread position: 540-802
Cow position: chr17:43471522-43471254 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 14, 0

Conread position: 541-795
Cow position: chr17:21666074-21666329 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 110

Conread position: 541-798
Cow position: chr17:13910538-13910284 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 11, 105

Conread position: 541-801
Cow position: chr17:4635705-4635447 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 166

Conread position: 541-801
Cow position: chr17:16118389-16118129 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 50

Conread position: 542-795
Cow position: chr17:22563216-22563474 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 12, 109

Conread position: 542-799
Cow position: chr17:14250037-14249771 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 542-801
Cow position: chr17:8994265-8994004 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 11, 71

Conread position: 542-801
Cow position: chr17:15374476-15374726 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 12, 38

Conread position: 542-801
Cow position: chr17:38828954-38829216 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 12, 26

Conread position: 542-802
Cow position: chr17:29041828-29041566 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 12, 49

Conread position: 550-788
Cow position: chr17:20215163-20215406 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 132, 57

Conread position: 550-792
Cow position: chr17:5043513-5043265 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 79

Conread position: 550-794
Cow position: chr17:20084733-20084482 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 54, 0

Conread position: 550-795
Cow position: chr17:36790150-36790396 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 75, 41

Conread position: 550-798
Cow position: chr17:29079460-29079690 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 140, 19

Conread position: 550-799
Cow position: chr17:29083258-29083502 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 550-801
Cow position: chr17:254178-254429 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 137, 17

Conread position: 550-801
Cow position: chr17:18591503-18591746 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 137, 22

Conread position: 562-800
Cow position: chr17:36747429-36747194 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 138, 82

Conread position: 562-801
Cow position: chr17:8449805-8450046 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 125, 76

Conread position: 566-801
Cow position: chr17:16505651-16505411 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 121, 0

Conread position: 577-801
Cow position: chr17:36266161-36265938 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 28, 79

Conread position: 591-786
Cow position: chr17:33792195-33792393 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 39

Conread position: 591-794
Cow position: chr17:20091489-20091294 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 20, 8

Conread position: 591-798
Cow position: chr17:15335318-15335106 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 88, 161

Conread position: 591-798
Cow position: chr17:29897761-29897968 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 165

Conread position: 591-801
Cow position: chr17:27978226-27978439 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 21

Conread position: 591-801
Cow position: chr17:40801873-40802083 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 116, 84

Conread position: 596-801
Cow position: chr17:42313010-42313220 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 91, 0

Conread position: 598-803
Cow position: chr17:12290359-12290148 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 89, 140

Conread position: 600-802
Cow position: chr17:1709489-1709689 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 87, 44

Conread position: 601-801
Cow position: chr17:22774329-22774127 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 86, 43

Conread position: 604-798
Cow position: chr17:36159900-36159701 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 608-802
Cow position: chr17:16216573-16216767 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 105, 66

Conread position: 613-801
Cow position: chr17:13725407-13725598 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 74, 175

Conread position: 618-802
Cow position: chr17:980037-979848 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 69, 0

Conread position: 619-801
Cow position: chr17:3652578-3652391 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 68, 0

Conread position: 629-801
Cow position: chr17:33934660-33934485 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 58, 19

Conread position: 634-801
Cow position: chr17:42258042-42258216 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 102

Conread position: 646-801
Cow position: chr17:3197454-3197294 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 661-801
Cow position: chr17:41014359-41014495 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 107, 15

Show alignments to all cow chromosomes.