Cow genome map

Conread name: Tra1-TCH01F040078

Conread position: 264-493
Cow position: chr18:27005349-27005578 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 52, 40

Conread position: 526-801
Cow position: chr18:17943790-17944069 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 219

Conread position: 527-786
Cow position: chr18:6104124-6103860 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 19, 134

Conread position: 527-792
Cow position: chr18:36771253-36770984 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 6

Conread position: 530-801
Cow position: chr18:38158261-38157983 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 530-801
Cow position: chr18:43285024-43284760 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 150

Conread position: 530-801
Cow position: chr18:51459560-51459286 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 162

Conread position: 538-795
Cow position: chr18:52698563-52698824 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 149, 79

Conread position: 538-801
Cow position: chr18:51653889-51654154 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 118

Conread position: 540-745
Cow position: chr18:33271929-33272137 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 14, 30

Conread position: 540-774
Cow position: chr18:10896486-10896720 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 22

Conread position: 540-789
Cow position: chr18:25354809-25355068 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 30

Conread position: 540-792
Cow position: chr18:47985189-47985440 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 15

Conread position: 540-798
Cow position: chr18:40484292-40484555 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 13, 0

Conread position: 540-798
Cow position: chr18:45978674-45978932 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 21, 98

Conread position: 540-799
Cow position: chr18:603172-602907 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:5536264-5536532 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:6733671-6733406 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 30

Conread position: 540-801
Cow position: chr18:14419269-14419536 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:16094177-16094444 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 11, 0

Conread position: 540-801
Cow position: chr18:16173321-16173054 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 540-801
Cow position: chr18:16857080-16857344 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 151, 15

Conread position: 540-801
Cow position: chr18:19310459-19310711 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 14, 68

Conread position: 540-801
Cow position: chr18:23688464-23688731 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:23701506-23701244 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 107

Conread position: 540-801
Cow position: chr18:23802315-23802582 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:24037554-24037287 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:24619721-24619982 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 14, 135

Conread position: 540-801
Cow position: chr18:26243166-26242900 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:27539724-27539981 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 12, 205

Conread position: 540-801
Cow position: chr18:27990049-27990316 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:28968997-28968730 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:29863312-29863045 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 540-801
Cow position: chr18:30844612-30844347 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 14, 106

Conread position: 540-801
Cow position: chr18:32164639-32164372 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:36776569-36776835 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 540-801
Cow position: chr18:37509260-37509521 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 14, 73

Conread position: 540-801
Cow position: chr18:41837798-41837531 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:43430298-43430562 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 196

Conread position: 540-801
Cow position: chr18:43464480-43464212 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 11, 66

Conread position: 540-801
Cow position: chr18:45980794-45981055 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 21, 60

Conread position: 540-801
Cow position: chr18:47745045-47745312 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:50093152-50092885 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:51484883-51485146 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 51

Conread position: 540-801
Cow position: chr18:51697938-51698199 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 30

Conread position: 540-801
Cow position: chr18:52629966-52629699 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 222

Conread position: 540-801
Cow position: chr18:54047171-54047438 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr18:55554543-55554810 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-802
Cow position: chr18:37692995-37692725 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 93

Conread position: 541-801
Cow position: chr18:33607528-33607786 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 115

Conread position: 541-802
Cow position: chr18:35057319-35057585 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 15, 103

Conread position: 542-787
Cow position: chr18:1145250-1145006 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 13, 40

Conread position: 542-789
Cow position: chr18:41237833-41238078 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 106, 48

Conread position: 542-795
Cow position: chr18:30876971-30876720 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 12, 89

Conread position: 542-795
Cow position: chr18:33522521-33522771 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 12, 49

Conread position: 542-798
Cow position: chr18:1022725-1022466 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 19

Conread position: 542-801
Cow position: chr18:17335446-17335182 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 12, 49

Conread position: 542-801
Cow position: chr18:23659600-23659336 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 109

Conread position: 543-801
Cow position: chr18:52696179-52696433 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 144, 13

Conread position: 546-801
Cow position: chr18:33498672-33498415 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 141, 75

Conread position: 546-801
Cow position: chr18:52458236-52457973 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 82

Conread position: 549-801
Cow position: chr18:40195414-40195670 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 136, 238

Conread position: 550-782
Cow position: chr18:15172157-15172387 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 140, 9

Conread position: 550-792
Cow position: chr18:23716357-23716113 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 110, 53

Conread position: 550-798
Cow position: chr18:44261371-44261621 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 70, 81

Conread position: 550-801
Cow position: chr18:7931275-7931033 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 175, 62

Conread position: 550-801
Cow position: chr18:28084350-28084606 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 168
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 137, 0

Conread position: 550-801
Cow position: chr18:33850833-33851088 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 137, 100

Conread position: 552-787
Cow position: chr18:56483358-56483126 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 135, 201

Conread position: 555-799
Cow position: chr18:51663483-51663731 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 132, 119

Conread position: 560-801
Cow position: chr18:3190057-3190303 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 127, 0

Conread position: 564-792
Cow position: chr18:35296468-35296695 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 123, 80

Conread position: 564-801
Cow position: chr18:42609359-42609117 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 123, 0

Conread position: 569-798
Cow position: chr18:52656117-52656350 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 118, 52

Conread position: 572-801
Cow position: chr18:54033033-54033267 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 118, 0

Conread position: 574-789
Cow position: chr18:48240676-48240878 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 177, 81

Conread position: 586-798
Cow position: chr18:45905534-45905318 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 142, 0

Conread position: 591-797
Cow position: chr18:2853443-2853233 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 96, 75

Conread position: 591-800
Cow position: chr18:8965649-8965849 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 102, 32

Conread position: 591-801
Cow position: chr18:26305617-26305831 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 97, 0

Conread position: 591-801
Cow position: chr18:29240665-29240878 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 96, 135

Conread position: 591-802
Cow position: chr18:36223787-36223994 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 96, 53

Conread position: 592-792
Cow position: chr18:29059475-29059271 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 35

Conread position: 593-801
Cow position: chr18:51580439-51580226 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 94, 0

Conread position: 595-770
Cow position: chr18:36908512-36908332 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 595-770
Cow position: chr18:36913041-36912861 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 596-801
Cow position: chr18:4949511-4949717 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 94, 59

Conread position: 596-801
Cow position: chr18:39002775-39002574 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 110

Conread position: 609-801
Cow position: chr18:16226584-16226781 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 78, 0

Conread position: 613-801
Cow position: chr18:16640814-16641007 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 80, 0

Conread position: 617-801
Cow position: chr18:32210445-32210253 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 617-801
Cow position: chr18:52574471-52574660 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 70, 0

Conread position: 620-801
Cow position: chr18:13508695-13508509 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 30

Conread position: 620-801
Cow position: chr18:33157909-33158095 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 621-792
Cow position: chr18:14047741-14047917 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 621-802
Cow position: chr18:42466970-42466787 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 69, 134

Conread position: 629-801
Cow position: chr18:51345670-51345847 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 634-798
Cow position: chr18:7953031-7953200 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 646-802
Cow position: chr18:21199705-21199543 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 662-789
Cow position: chr18:54027030-54027157 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 28

Show alignments to all cow chromosomes.