Cow genome map

Conread name: Tra1-TCH01F040078

Conread position: 9-204
Cow position: chr19:48012212-48012016 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 73, 39

Conread position: 251-414
Cow position: chr19:48011926-48011765 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 64, 39

Conread position: 406-539
Cow position: chr19:48011632-48011502 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 525-801
Cow position: chr19:12209650-12209365 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 527-801
Cow position: chr19:2588474-2588747 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 6

Conread position: 528-801
Cow position: chr19:42866749-42867030 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 10, 0

Conread position: 530-801
Cow position: chr19:776800-777073 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 101

Conread position: 540-779
Cow position: chr19:5732793-5733038 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 540-786
Cow position: chr19:5044384-5044147 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 142, 10

Conread position: 540-798
Cow position: chr19:6402-6663 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 14, 154

Conread position: 540-801
Cow position: chr19:41631-41898 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 540-801
Cow position: chr19:436040-435771 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:542325-542059 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 30, 114

Conread position: 540-801
Cow position: chr19:930117-930384 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:1293648-1293915 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:2270003-2269736 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:3086091-3086357 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:5902325-5902592 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:10613526-10613793 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:14157712-14157973 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 29

Conread position: 540-801
Cow position: chr19:16316909-16316654 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 125

Conread position: 540-801
Cow position: chr19:22512543-22512809 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 111

Conread position: 540-801
Cow position: chr19:27082116-27081850 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 14, 55

Conread position: 540-801
Cow position: chr19:28795027-28794766 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 40

Conread position: 540-801
Cow position: chr19:29366826-29367093 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:29624334-29624601 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:31781869-31782135 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 14, 30

Conread position: 540-801
Cow position: chr19:33876714-33876981 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:33944865-33945131 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 14, 28

Conread position: 540-801
Cow position: chr19:34906027-34905760 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 14, 30

Conread position: 540-801
Cow position: chr19:35781174-35781441 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:36351567-36351833 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 0

Conread position: 540-801
Cow position: chr19:39182242-39181975 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:39394499-39394766 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:40016288-40016027 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 14, 51

Conread position: 540-801
Cow position: chr19:40791058-40790793 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 14, 209

Conread position: 540-801
Cow position: chr19:40849191-40848924 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:43148879-43149146 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 223

Conread position: 540-801
Cow position: chr19:45464432-45464698 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 232

Conread position: 540-801
Cow position: chr19:55164359-55164092 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 540-801
Cow position: chr19:55843302-55843559 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 14, 135

Conread position: 540-802
Cow position: chr19:28450123-28450381 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 30

Conread position: 541-801
Cow position: chr19:24734442-24734702 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 119

Conread position: 541-801
Cow position: chr19:37844481-37844219 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 13, 78

Conread position: 542-795
Cow position: chr19:1581609-1581350 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 542-801
Cow position: chr19:799677-799931 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 19, 98

Conread position: 542-801
Cow position: chr19:28610677-28610936 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 141, 92

Conread position: 542-802
Cow position: chr19:12601399-12601138 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 12, 86

Conread position: 549-801
Cow position: chr19:46821162-46821416 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 30, 43

Conread position: 550-780
Cow position: chr19:20672286-20672051 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 137, 0

Conread position: 550-795
Cow position: chr19:39696793-39697043 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 550-798
Cow position: chr19:9098921-9099178 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 550-801
Cow position: chr19:1663381-1663632 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 140, 156

Conread position: 550-801
Cow position: chr19:3221421-3221674 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 211

Conread position: 550-801
Cow position: chr19:40884215-40883958 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 213

Conread position: 550-802
Cow position: chr19:7472369-7472612 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 550-802
Cow position: chr19:7491404-7491655 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 140, 73

Conread position: 559-801
Cow position: chr19:12652193-12652440 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 128, 203

Conread position: 560-795
Cow position: chr19:743388-743157 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 130, 54

Conread position: 560-801
Cow position: chr19:405467-405713 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 133, 201

Conread position: 562-747
Cow position: chr19:50020641-50020452 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 126, 88

Conread position: 572-801
Cow position: chr19:14528163-14528386 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 112, 18

Conread position: 591-798
Cow position: chr19:30237060-30237270 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 99, 0

Conread position: 591-801
Cow position: chr19:14180650-14180436 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 77

Conread position: 591-801
Cow position: chr19:26518981-26518766 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 96, 0

Conread position: 592-801
Cow position: chr19:30473787-30473580 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 115, 58

Conread position: 597-787
Cow position: chr19:36189053-36189249 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 598-795
Cow position: chr19:21337548-21337347 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 89, 184

Conread position: 598-798
Cow position: chr19:15796781-15796986 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 89, 0

Conread position: 600-801
Cow position: chr19:14156748-14156543 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 87, 169

Conread position: 611-801
Cow position: chr19:54542622-54542428 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 82, 39

Conread position: 612-801
Cow position: chr19:23463721-23463527 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 81, 0

Conread position: 613-801
Cow position: chr19:50833530-50833338 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 74, 36

Conread position: 613-801
Cow position: chr19:52148054-52147861 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 149
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 78, 0

Conread position: 615-801
Cow position: chr19:29628314-29628125 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 72, 113

Conread position: 620-801
Cow position: chr19:7065056-7065243 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 143

Conread position: 620-801
Cow position: chr19:30717270-30717455 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 30

Conread position: 622-795
Cow position: chr19:44216468-44216292 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 65, 39

Conread position: 633-801
Cow position: chr19:20433846-20433678 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 54, 73

Conread position: 635-801
Cow position: chr19:19501297-19501126 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 657-801
Cow position: chr19:19805454-19805305 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 661-801
Cow position: chr19:42725438-42725576 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.