Cow genome map
| Conread name: | Tra1-TCH01F040078 |
| Conread position: | 516-787 |
| Cow position: | chr25:23393830-23394099 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 516-802 |
| Cow position: | chr25:11665633-11665912 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 524-801 |
| Cow position: | chr25:33838348-33838624 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 527-801 |
| Cow position: | chr25:23366635-23366915 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 6 |
| Conread position: | 530-801 |
| Cow position: | chr25:23326056-23325780 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 216 |
| Conread position: | 538-801 |
| Cow position: | chr25:41386109-41385850 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 538-802 |
| Cow position: | chr25:17993163-17992898 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 6, 108 |
| Conread position: | 540-786 |
| Cow position: | chr25:20633742-20633993 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 134 |
| Conread position: | 540-787 |
| Cow position: | chr25:37966943-37967195 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 540-789 |
| Cow position: | chr25:18190393-18190142 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 540-789 |
| Cow position: | chr25:18490047-18490301 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-792 |
| Cow position: | chr25:10013080-10012823 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 540-795 |
| Cow position: | chr25:18072206-18072467 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 540-795 |
| Cow position: | chr25:34343925-34343666 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 540-798 |
| Cow position: | chr25:13960048-13960307 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 540-798 |
| Cow position: | chr25:18474188-18474443 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 540-798 |
| Cow position: | chr25:26282006-26282269 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 119 |
| Conread position: | 540-798 |
| Cow position: | chr25:35567902-35567641 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 540-799 |
| Cow position: | chr25:34673605-34673340 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:8655271-8655539 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:12756443-12756172 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 540-801 |
| Cow position: | chr25:12939226-12938959 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:13430128-13429864 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 153, 32 |
| Conread position: | 540-801 |
| Cow position: | chr25:17562028-17562287 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 540-801 |
| Cow position: | chr25:18269454-18269725 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 540-801 |
| Cow position: | chr25:18330795-18330527 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:19337344-19337079 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:19682276-19682530 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 540-801 |
| Cow position: | chr25:19923508-19923769 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 540-801 |
| Cow position: | chr25:22151086-22151353 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:24655188-24654926 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 540-801 |
| Cow position: | chr25:27019256-27018990 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 540-801 |
| Cow position: | chr25:28275685-28275420 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 540-801 |
| Cow position: | chr25:28862853-28863120 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:29358031-29357764 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:32577681-32577414 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:32610439-32610172 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:34164580-34164314 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 540-801 |
| Cow position: | chr25:34503241-34502974 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:35445932-35446192 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 540-801 |
| Cow position: | chr25:36350721-36350986 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 540-801 |
| Cow position: | chr25:37648413-37648665 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 540-801 |
| Cow position: | chr25:39386848-39386581 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr25:41098210-41097950 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 21, 112 |
| Conread position: | 540-801 |
| Cow position: | chr25:41356816-41356549 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 540-802 |
| Cow position: | chr25:26914215-26914479 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 541-798 |
| Cow position: | chr25:27231341-27231600 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 541-800 |
| Cow position: | chr25:11955813-11956077 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 222 |
| Conread position: | 541-801 |
| Cow position: | chr25:17657602-17657867 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 541-801 |
| Cow position: | chr25:35553652-35553916 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 541-801 |
| Cow position: | chr25:40322308-40322042 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 541-801 |
| Cow position: | chr25:41135761-41135500 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 14 |
| Conread position: | 542-730 |
| Cow position: | chr25:28420722-28420526 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 542-790 |
| Cow position: | chr25:24303282-24303030 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 542-798 |
| Cow position: | chr25:25480615-25480365 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 542-801 |
| Cow position: | chr25:25826431-25826698 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 544-801 |
| Cow position: | chr25:16922804-16922543 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 545-801 |
| Cow position: | chr25:18486452-18486707 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 142, 25 |
| Conread position: | 549-801 |
| Cow position: | chr25:20495547-20495792 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 155, 101 |
| Conread position: | 550-801 |
| Cow position: | chr25:2516000-2516246 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 137, 76 |
| Conread position: | 550-801 |
| Cow position: | chr25:4522819-4522563 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 550-801 |
| Cow position: | chr25:10136816-10137062 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 37 |
| Conread position: | 550-801 |
| Cow position: | chr25:18265189-18265436 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 550-801 |
| Cow position: | chr25:26781090-26780838 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 560-801 |
| Cow position: | chr25:41121007-41121252 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 569-801 |
| Cow position: | chr25:33688199-33687959 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 572-801 |
| Cow position: | chr25:16801454-16801688 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 574-799 |
| Cow position: | chr25:33574717-33574492 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 591-801 |
| Cow position: | chr25:34013720-34013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 59 |
| Conread position: | 609-801 |
| Cow position: | chr25:14954980-14954789 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 613-801 |
| Cow position: | chr25:15429625-15429432 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 620-801 |
| Cow position: | chr25:25509951-25510137 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 625-801 |
| Cow position: | chr25:9413414-9413595 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 630-801 |
| Cow position: | chr25:4858427-4858251 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 636-790 |
| Cow position: | chr25:16309129-16308969 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 636-801 |
| Cow position: | chr25:24637062-24636895 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 24 |
Show alignments to all cow chromosomes.