Cow genome map
| Conread name: | Tra1-TCH01F040078 |
| Conread position: | 516-801 |
| Cow position: | chr27:21392180-21392469 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 528-795 |
| Cow position: | chr27:3990620-3990347 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 530-795 |
| Cow position: | chr27:15272887-15272621 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 535-792 |
| Cow position: | chr27:26552198-26551942 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 538-801 |
| Cow position: | chr27:25784565-25784302 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 5, 98 |
| Conread position: | 538-801 |
| Cow position: | chr27:30036059-30036330 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 540-782 |
| Cow position: | chr27:27045369-27045614 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 540-786 |
| Cow position: | chr27:3232342-3232090 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-792 |
| Cow position: | chr27:26330124-26330382 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-795 |
| Cow position: | chr27:1536362-1536622 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 540-795 |
| Cow position: | chr27:2557799-2557540 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 14, 118 |
| Conread position: | 540-795 |
| Cow position: | chr27:13316755-13317008 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 540-795 |
| Cow position: | chr27:14380496-14380756 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-795 |
| Cow position: | chr27:15634150-15633890 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 134 |
| Conread position: | 540-795 |
| Cow position: | chr27:25801013-25800758 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 540-798 |
| Cow position: | chr27:5990854-5990589 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 540-798 |
| Cow position: | chr27:11481123-11481387 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 540-798 |
| Cow position: | chr27:19424185-19423921 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-798 |
| Cow position: | chr27:19523516-19523253 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 540-798 |
| Cow position: | chr27:20810613-20810872 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 540-799 |
| Cow position: | chr27:15870818-15870563 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 21, 111 |
| Conread position: | 540-799 |
| Cow position: | chr27:27930400-27930653 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 540-801 |
| Cow position: | chr27:1188858-1189121 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 540-801 |
| Cow position: | chr27:2331695-2331962 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:3653508-3653241 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:4331548-4331280 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 226 |
| Conread position: | 540-801 |
| Cow position: | chr27:5914125-5914387 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 205 |
| Conread position: | 540-801 |
| Cow position: | chr27:5983838-5983571 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:13183080-13182826 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 540-801 |
| Cow position: | chr27:13353498-13353765 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:13901316-13901583 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:14297399-14297666 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:15033699-15033432 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:15867103-15866844 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 540-801 |
| Cow position: | chr27:16031205-16030938 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:24296077-24295801 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-801 |
| Cow position: | chr27:26785014-26785276 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 30 |
| Conread position: | 540-801 |
| Cow position: | chr27:27291581-27291852 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 227 |
| Conread position: | 540-802 |
| Cow position: | chr27:5925465-5925722 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 541-795 |
| Cow position: | chr27:8291036-8291294 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 541-798 |
| Cow position: | chr27:344735-344474 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 9 |
| Conread position: | 542-715 |
| Cow position: | chr27:25885019-25885192 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 129 |
| Conread position: | 542-795 |
| Cow position: | chr27:25799451-25799711 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 542-798 |
| Cow position: | chr27:11434369-11434623 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 542-798 |
| Cow position: | chr27:18954237-18954499 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 542-801 |
| Cow position: | chr27:16788102-16787839 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 542-801 |
| Cow position: | chr27:27729293-27729032 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 12, 129 |
| Conread position: | 542-801 |
| Cow position: | chr27:29467124-29467387 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 543-776 |
| Cow position: | chr27:15697545-15697777 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 544-799 |
| Cow position: | chr27:4389199-4389445 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 545-799 |
| Cow position: | chr27:27557001-27557261 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 142, 25 |
| Conread position: | 550-786 |
| Cow position: | chr27:31249445-31249677 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 550-789 |
| Cow position: | chr27:23317739-23317505 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 157, 55 |
| Conread position: | 550-801 |
| Cow position: | chr27:2681727-2681979 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 550-801 |
| Cow position: | chr27:4982575-4982831 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 550-801 |
| Cow position: | chr27:8201141-8201394 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 550-801 |
| Cow position: | chr27:8427060-8427309 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 187 |
| Conread position: | 550-801 |
| Cow position: | chr27:9332880-9333126 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 137, 94 |
| Conread position: | 551-794 |
| Cow position: | chr27:10306322-10306569 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 131, 64 |
| Conread position: | 566-801 |
| Cow position: | chr27:30677860-30677627 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 573-799 |
| Cow position: | chr27:10383667-10383888 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 591-789 |
| Cow position: | chr27:14669434-14669637 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 591-793 |
| Cow position: | chr27:24205890-24205683 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 591-801 |
| Cow position: | chr27:11489865-11490081 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 591-801 |
| Cow position: | chr27:16332234-16332020 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 591-801 |
| Cow position: | chr27:21451686-21451902 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 591-801 |
| Cow position: | chr27:30583658-30583439 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 598-786 |
| Cow position: | chr27:1124380-1124183 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 167 |
| Conread position: | 613-802 |
| Cow position: | chr27:11256420-11256226 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 620-801 |
| Cow position: | chr27:25112433-25112615 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 150 |
| Conread position: | 624-798 |
| Cow position: | chr27:816484-816307 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 629-799 |
| Cow position: | chr27:26599189-26599012 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 630-799 |
| Cow position: | chr27:4805071-4805247 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 633-801 |
| Cow position: | chr27:28984055-28984224 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 635-801 |
| Cow position: | chr27:19300278-19300107 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 647-801 |
| Cow position: | chr27:10324626-10324470 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 650-801 |
| Cow position: | chr27:8262141-8262296 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 664-801 |
| Cow position: | chr27:13409312-13409454 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.