Cow genome map

Conread name: Tra1-TCH01G050069

Conread position: 1-409
Cow position: chr10:15860775-15860390 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 19, 88

Conread position: 1-771
Cow position: chr10:31524228-31524980 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 22

Conread position: 3-330
Cow position: chr10:46191847-46192151 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 183, 9

Conread position: 20-464
Cow position: chr10:28931251-28930805 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 74

Conread position: 26-237
Cow position: chr10:33347168-33347381 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 122, 67

Conread position: 30-231
Cow position: chr10:42629103-42629308 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 119, 46

Conread position: 30-903
Cow position: chr10:38545750-38544881 (view UCSC Genome Browser custom track)
Alignm length: 906
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 65

Conread position: 31-592
Cow position: chr10:14861412-14861962 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 42

Conread position: 32-611
Cow position: chr10:3543070-3542496 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 26

Conread position: 48-247
Cow position: chr10:13364347-13364144 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 138, 46

Conread position: 48-247
Cow position: chr10:13365537-13365334 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 138, 46

Conread position: 62-437
Cow position: chr10:38847900-38848270 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 32

Conread position: 82-459
Cow position: chr10:44294694-44294338 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 272, 23

Conread position: 92-508
Cow position: chr10:21900569-21900152 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 16

Conread position: 101-903
Cow position: chr10:26596825-26597650 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 623
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 72

Conread position: 110-664
Cow position: chr10:38403953-38403406 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 93

Conread position: 114-901
Cow position: chr10:22101477-22102272 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 117-365
Cow position: chr10:20370982-20370748 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 31

Conread position: 117-545
Cow position: chr10:41775002-41774571 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 294
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 65, 133

Conread position: 133-327
Cow position: chr10:42749017-42749218 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 114

Conread position: 133-547
Cow position: chr10:41388861-41388439 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 279
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 38, 113

Conread position: 149-498
Cow position: chr10:21077158-21077511 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 175

Conread position: 149-545
Cow position: chr10:289094-288690 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 269
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 89

Conread position: 158-329
Cow position: chr10:42110609-42110785 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 26, 87

Conread position: 168-339
Cow position: chr10:62778647-62778810 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 5

Conread position: 168-369
Cow position: chr10:34686193-34686389 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 68, 8

Conread position: 168-893
Cow position: chr10:24977471-24976742 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 15

Conread position: 183-523
Cow position: chr10:17432951-17432614 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 33

Conread position: 196-361
Cow position: chr10:8339714-8339879 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 32, 16

Conread position: 199-901
Cow position: chr10:30685190-30684478 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 23

Conread position: 215-903
Cow position: chr10:8290316-8291016 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 26

Conread position: 216-901
Cow position: chr10:19511943-19512625 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 26

Conread position: 220-356
Cow position: chr10:25359742-25359876 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 220-356
Cow position: chr10:32651076-32651209 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 220-901
Cow position: chr10:16925878-16926563 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-902
Cow position: chr10:21487258-21487954 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-903
Cow position: chr10:39040959-39040270 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-903
Cow position: chr10:57989651-57988959 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 21

Conread position: 220-903
Cow position: chr10:62408508-62407806 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 21

Conread position: 221-444
Cow position: chr10:10582147-10582367 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 157, 20

Conread position: 221-464
Cow position: chr10:54978909-54978675 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 133, 110

Conread position: 221-735
Cow position: chr10:5849290-5848763 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 125

Conread position: 221-735
Cow position: chr10:56065009-56065537 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 221-901
Cow position: chr10:38345017-38344325 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 20

Conread position: 221-903
Cow position: chr10:38538160-38537463 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 20

Conread position: 222-356
Cow position: chr10:124654-124787 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 121, 0

Conread position: 223-369
Cow position: chr10:62216952-62217097 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 13, 121

Conread position: 223-537
Cow position: chr10:25564920-25564605 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 100

Conread position: 223-894
Cow position: chr10:41157785-41158468 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 130

Conread position: 223-894
Cow position: chr10:55093603-55094293 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 640

Conread position: 223-901
Cow position: chr10:21400333-21399638 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 123

Conread position: 223-903
Cow position: chr10:7281749-7281053 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 18

Conread position: 223-903
Cow position: chr10:14804174-14804881 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 94

Conread position: 223-903
Cow position: chr10:39180121-39180826 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 87

Conread position: 223-903
Cow position: chr10:41567440-41568137 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 224-901
Cow position: chr10:29846305-29845613 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 17

Conread position: 230-901
Cow position: chr10:2120660-2119978 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 11

Conread position: 231-903
Cow position: chr10:280277-279570 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 86

Conread position: 235-493
Cow position: chr10:32578637-32578896 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 69

Conread position: 235-572
Cow position: chr10:51952273-51951934 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 112

Conread position: 235-894
Cow position: chr10:41877267-41877944 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 63

Conread position: 235-903
Cow position: chr10:21740403-21739712 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 109

Conread position: 235-903
Cow position: chr10:28641888-28642571 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 109

Conread position: 241-894
Cow position: chr10:19495930-19495254 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 105

Conread position: 244-903
Cow position: chr10:11698602-11699281 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 95

Conread position: 246-893
Cow position: chr10:11821128-11821779 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 54

Conread position: 257-669
Cow position: chr10:4191866-4191458 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 89

Conread position: 258-537
Cow position: chr10:64287980-64287692 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 113, 23

Conread position: 259-731
Cow position: chr10:19715187-19714705 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 20

Conread position: 264-530
Cow position: chr10:37770752-37771022 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 10

Conread position: 268-894
Cow position: chr10:47907313-47907957 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 75

Conread position: 274-485
Cow position: chr10:39816097-39815886 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 80, 69

Conread position: 282-512
Cow position: chr10:60193074-60193303 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 98, 140

Conread position: 282-903
Cow position: chr10:14335444-14334811 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 64

Conread position: 284-635
Cow position: chr10:41632039-41632382 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 96, 123

Show alignments to all cow chromosomes.