Cow genome map

Conread name: Tra1-TCH01G050069

Conread position: 11-610
Cow position: chr11:28049433-28048839 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 65

Conread position: 13-266
Cow position: chr11:17180330-17180577 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 167, 13

Conread position: 30-903
Cow position: chr11:10090461-10091354 (view UCSC Genome Browser custom track)
Alignm length: 905
Alignm identity: 674
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 64

Conread position: 46-338
Cow position: chr11:9220152-9219870 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 73

Conread position: 46-362
Cow position: chr11:8261735-8261426 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 127, 28

Conread position: 46-628
Cow position: chr11:28063645-28064212 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 48

Conread position: 73-477
Cow position: chr11:8283290-8283694 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 21

Conread position: 77-363
Cow position: chr11:30124585-30124297 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 109, 17

Conread position: 104-604
Cow position: chr11:52886185-52885706 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 44

Conread position: 114-367
Cow position: chr11:8887273-8887033 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 27

Conread position: 118-896
Cow position: chr11:21474132-21474921 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 58

Conread position: 121-703
Cow position: chr11:29233390-29232763 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 317

Conread position: 122-383
Cow position: chr11:87128663-87128925 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 64, 27

Conread position: 125-493
Cow position: chr11:59369700-59370072 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 259
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 61, 118

Conread position: 149-766
Cow position: chr11:15899037-15898418 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 97

Conread position: 150-369
Cow position: chr11:30305161-30305376 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 24, 38

Conread position: 150-903
Cow position: chr11:66727278-66728053 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 196

Conread position: 151-536
Cow position: chr11:30277299-30277690 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 252
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 52

Conread position: 155-893
Cow position: chr11:30187779-30188508 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 56

Conread position: 157-356
Cow position: chr11:44495537-44495335 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 193

Conread position: 167-769
Cow position: chr11:62229129-62229718 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 47

Conread position: 168-369
Cow position: chr11:256250-256058 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 5

Conread position: 168-902
Cow position: chr11:31926108-31926843 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 5

Conread position: 183-363
Cow position: chr11:30125302-30125123 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 12

Conread position: 183-469
Cow position: chr11:33978273-33977979 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 123, 33

Conread position: 203-903
Cow position: chr11:19102521-19101820 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 13

Conread position: 212-901
Cow position: chr11:9734698-9734008 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 211

Conread position: 215-903
Cow position: chr11:29668655-29667932 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 26

Conread position: 216-901
Cow position: chr11:26124954-26124254 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 25

Conread position: 217-596
Cow position: chr11:22934778-22935150 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 80

Conread position: 220-669
Cow position: chr11:84389607-84390064 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 54

Conread position: 220-887
Cow position: chr11:76374224-76373562 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 80

Conread position: 220-889
Cow position: chr11:11988088-11988770 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-901
Cow position: chr11:12093539-12094238 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 60

Conread position: 220-901
Cow position: chr11:41170711-41170023 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 21

Conread position: 220-901
Cow position: chr11:53432085-53431386 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 21

Conread position: 220-903
Cow position: chr11:10847423-10848126 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-903
Cow position: chr11:38835450-38834760 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 21

Conread position: 220-903
Cow position: chr11:43514651-43513957 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 22

Conread position: 220-903
Cow position: chr11:44157272-44156572 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 21

Conread position: 220-903
Cow position: chr11:58134368-58135069 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 221-361
Cow position: chr11:20920771-20920631 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 136, 125

Conread position: 221-489
Cow position: chr11:20510106-20510371 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 134, 25

Conread position: 221-611
Cow position: chr11:5343243-5342848 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 126

Conread position: 221-669
Cow position: chr11:64045972-64046426 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 221-893
Cow position: chr11:24393300-24393980 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 221-899
Cow position: chr11:73477282-73477978 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 221-901
Cow position: chr11:23877285-23877967 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 20

Conread position: 221-903
Cow position: chr11:12358442-12357740 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 29

Conread position: 221-903
Cow position: chr11:61401077-61400389 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 125

Conread position: 222-504
Cow position: chr11:47760718-47760428 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 50, 17

Conread position: 222-544
Cow position: chr11:4270878-4270553 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 28

Conread position: 222-869
Cow position: chr11:46246580-46245920 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 49

Conread position: 222-893
Cow position: chr11:4027581-4026896 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 121

Conread position: 222-901
Cow position: chr11:9157172-9156485 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 57

Conread position: 222-903
Cow position: chr11:44251781-44252471 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 19

Conread position: 223-669
Cow position: chr11:9606598-9606152 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 56

Conread position: 223-894
Cow position: chr11:28229781-28229092 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 123

Conread position: 223-894
Cow position: chr11:33194577-33193894 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-896
Cow position: chr11:67450474-67451159 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-901
Cow position: chr11:15983600-15984297 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 121

Conread position: 223-903
Cow position: chr11:85393828-85393139 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 123

Conread position: 233-551
Cow position: chr11:8245301-8245624 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 110

Conread position: 234-889
Cow position: chr11:1496087-1495429 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 21

Conread position: 235-894
Cow position: chr11:36744193-36743515 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 63

Conread position: 235-903
Cow position: chr11:17107699-17107010 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 112

Conread position: 241-453
Cow position: chr11:38505611-38505399 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 102, 89

Conread position: 241-738
Cow position: chr11:19064255-19063754 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 105

Conread position: 241-893
Cow position: chr11:31874775-31874123 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 139

Conread position: 241-894
Cow position: chr11:52419382-52420055 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 190

Conread position: 241-894
Cow position: chr11:67846577-67845905 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 241-899
Cow position: chr11:28108144-28108806 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 102

Conread position: 241-901
Cow position: chr11:57628052-57627386 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 68

Conread position: 241-903
Cow position: chr11:3493005-3493669 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 103

Conread position: 246-527
Cow position: chr11:4041089-4040808 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 77

Conread position: 246-642
Cow position: chr11:32271315-32270912 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 104

Conread position: 265-903
Cow position: chr11:20734224-20733566 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 81

Conread position: 272-772
Cow position: chr11:7116245-7116763 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 107

Conread position: 273-894
Cow position: chr11:64082057-64081418 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 73

Conread position: 274-488
Cow position: chr11:43733760-43733979 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 104, 0

Conread position: 280-901
Cow position: chr11:40775961-40775339 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 63

Conread position: 286-894
Cow position: chr11:63655298-63654673 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 60

Conread position: 293-894
Cow position: chr11:36762809-36763415 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 48

Conread position: 294-863
Cow position: chr11:42432199-42432768 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 49

Conread position: 297-903
Cow position: chr11:71329645-71330265 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 49

Show alignments to all cow chromosomes.