Cow genome map
Conread name: | Tra1-TCH01G050069 |
Conread position: | 11-610 |
Cow position: | chr11:28049433-28048839 (view UCSC Genome Browser custom track) |
Alignm length: | 615 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 65 |
Conread position: | 13-266 |
Cow position: | chr11:17180330-17180577 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 180 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 167, 13 |
Conread position: | 30-903 |
Cow position: | chr11:10090461-10091354 (view UCSC Genome Browser custom track) |
Alignm length: | 905 |
Alignm identity: | 674 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 64 |
Conread position: | 46-338 |
Cow position: | chr11:9220152-9219870 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 208 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 34, 73 |
Conread position: | 46-362 |
Cow position: | chr11:8261735-8261426 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 216 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 127, 28 |
Conread position: | 46-628 |
Cow position: | chr11:28063645-28064212 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 48 |
Conread position: | 73-477 |
Cow position: | chr11:8283290-8283694 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 21 |
Conread position: | 77-363 |
Cow position: | chr11:30124585-30124297 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 215 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 109, 17 |
Conread position: | 104-604 |
Cow position: | chr11:52886185-52885706 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 44 |
Conread position: | 114-367 |
Cow position: | chr11:8887273-8887033 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 173 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 13, 27 |
Conread position: | 118-896 |
Cow position: | chr11:21474132-21474921 (view UCSC Genome Browser custom track) |
Alignm length: | 813 |
Alignm identity: | 530 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 58 |
Conread position: | 121-703 |
Cow position: | chr11:29233390-29232763 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 418 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 317 |
Conread position: | 122-383 |
Cow position: | chr11:87128663-87128925 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 185 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 64, 27 |
Conread position: | 125-493 |
Cow position: | chr11:59369700-59370072 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 259 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 61, 118 |
Conread position: | 149-766 |
Cow position: | chr11:15899037-15898418 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 97 |
Conread position: | 150-369 |
Cow position: | chr11:30305161-30305376 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 156 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 24, 38 |
Conread position: | 150-903 |
Cow position: | chr11:66727278-66728053 (view UCSC Genome Browser custom track) |
Alignm length: | 787 |
Alignm identity: | 550 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 196 |
Conread position: | 151-536 |
Cow position: | chr11:30277299-30277690 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 252 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 35, 52 |
Conread position: | 155-893 |
Cow position: | chr11:30187779-30188508 (view UCSC Genome Browser custom track) |
Alignm length: | 759 |
Alignm identity: | 499 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 56 |
Conread position: | 157-356 |
Cow position: | chr11:44495537-44495335 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 141 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 34, 193 |
Conread position: | 167-769 |
Cow position: | chr11:62229129-62229718 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 47 |
Conread position: | 168-369 |
Cow position: | chr11:256250-256058 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 149 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 68, 5 |
Conread position: | 168-902 |
Cow position: | chr11:31926108-31926843 (view UCSC Genome Browser custom track) |
Alignm length: | 752 |
Alignm identity: | 548 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 169, 5 |
Conread position: | 183-363 |
Cow position: | chr11:30125302-30125123 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 135 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 27, 12 |
Conread position: | 183-469 |
Cow position: | chr11:33978273-33977979 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 210 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 123, 33 |
Conread position: | 203-903 |
Cow position: | chr11:19102521-19101820 (view UCSC Genome Browser custom track) |
Alignm length: | 719 |
Alignm identity: | 540 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 13 |
Conread position: | 212-901 |
Cow position: | chr11:9734698-9734008 (view UCSC Genome Browser custom track) |
Alignm length: | 707 |
Alignm identity: | 516 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 211 |
Conread position: | 215-903 |
Cow position: | chr11:29668655-29667932 (view UCSC Genome Browser custom track) |
Alignm length: | 728 |
Alignm identity: | 529 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 26 |
Conread position: | 216-901 |
Cow position: | chr11:26124954-26124254 (view UCSC Genome Browser custom track) |
Alignm length: | 706 |
Alignm identity: | 533 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 25 |
Conread position: | 217-596 |
Cow position: | chr11:22934778-22935150 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 80 |
Conread position: | 220-669 |
Cow position: | chr11:84389607-84390064 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 54 |
Conread position: | 220-887 |
Cow position: | chr11:76374224-76373562 (view UCSC Genome Browser custom track) |
Alignm length: | 683 |
Alignm identity: | 502 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 80 |
Conread position: | 220-889 |
Cow position: | chr11:11988088-11988770 (view UCSC Genome Browser custom track) |
Alignm length: | 690 |
Alignm identity: | 528 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 21 |
Conread position: | 220-901 |
Cow position: | chr11:12093539-12094238 (view UCSC Genome Browser custom track) |
Alignm length: | 708 |
Alignm identity: | 519 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 60 |
Conread position: | 220-901 |
Cow position: | chr11:41170711-41170023 (view UCSC Genome Browser custom track) |
Alignm length: | 704 |
Alignm identity: | 532 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 21 |
Conread position: | 220-901 |
Cow position: | chr11:53432085-53431386 (view UCSC Genome Browser custom track) |
Alignm length: | 703 |
Alignm identity: | 534 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 21 |
Conread position: | 220-903 |
Cow position: | chr11:10847423-10848126 (view UCSC Genome Browser custom track) |
Alignm length: | 706 |
Alignm identity: | 530 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 21 |
Conread position: | 220-903 |
Cow position: | chr11:38835450-38834760 (view UCSC Genome Browser custom track) |
Alignm length: | 706 |
Alignm identity: | 530 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 21 |
Conread position: | 220-903 |
Cow position: | chr11:43514651-43513957 (view UCSC Genome Browser custom track) |
Alignm length: | 705 |
Alignm identity: | 536 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 22 |
Conread position: | 220-903 |
Cow position: | chr11:44157272-44156572 (view UCSC Genome Browser custom track) |
Alignm length: | 707 |
Alignm identity: | 536 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 21 |
Conread position: | 220-903 |
Cow position: | chr11:58134368-58135069 (view UCSC Genome Browser custom track) |
Alignm length: | 706 |
Alignm identity: | 537 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 21 |
Conread position: | 221-361 |
Cow position: | chr11:20920771-20920631 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 108 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 136, 125 |
Conread position: | 221-489 |
Cow position: | chr11:20510106-20510371 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 197 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 134, 25 |
Conread position: | 221-611 |
Cow position: | chr11:5343243-5342848 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 126 |
Conread position: | 221-669 |
Cow position: | chr11:64045972-64046426 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 122 |
Conread position: | 221-893 |
Cow position: | chr11:24393300-24393980 (view UCSC Genome Browser custom track) |
Alignm length: | 691 |
Alignm identity: | 518 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 122 |
Conread position: | 221-899 |
Cow position: | chr11:73477282-73477978 (view UCSC Genome Browser custom track) |
Alignm length: | 699 |
Alignm identity: | 517 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 122 |
Conread position: | 221-901 |
Cow position: | chr11:23877285-23877967 (view UCSC Genome Browser custom track) |
Alignm length: | 695 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 20 |
Conread position: | 221-903 |
Cow position: | chr11:12358442-12357740 (view UCSC Genome Browser custom track) |
Alignm length: | 707 |
Alignm identity: | 544 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 29 |
Conread position: | 221-903 |
Cow position: | chr11:61401077-61400389 (view UCSC Genome Browser custom track) |
Alignm length: | 699 |
Alignm identity: | 508 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 125 |
Conread position: | 222-504 |
Cow position: | chr11:47760718-47760428 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 220 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 50, 17 |
Conread position: | 222-544 |
Cow position: | chr11:4270878-4270553 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 28 |
Conread position: | 222-869 |
Cow position: | chr11:46246580-46245920 (view UCSC Genome Browser custom track) |
Alignm length: | 673 |
Alignm identity: | 496 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 49 |
Conread position: | 222-893 |
Cow position: | chr11:4027581-4026896 (view UCSC Genome Browser custom track) |
Alignm length: | 690 |
Alignm identity: | 522 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 121 |
Conread position: | 222-901 |
Cow position: | chr11:9157172-9156485 (view UCSC Genome Browser custom track) |
Alignm length: | 701 |
Alignm identity: | 521 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 57 |
Conread position: | 222-903 |
Cow position: | chr11:44251781-44252471 (view UCSC Genome Browser custom track) |
Alignm length: | 703 |
Alignm identity: | 521 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 19 |
Conread position: | 223-669 |
Cow position: | chr11:9606598-9606152 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 56 |
Conread position: | 223-894 |
Cow position: | chr11:28229781-28229092 (view UCSC Genome Browser custom track) |
Alignm length: | 695 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 123 |
Conread position: | 223-894 |
Cow position: | chr11:33194577-33193894 (view UCSC Genome Browser custom track) |
Alignm length: | 691 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 120 |
Conread position: | 223-896 |
Cow position: | chr11:67450474-67451159 (view UCSC Genome Browser custom track) |
Alignm length: | 696 |
Alignm identity: | 510 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 120 |
Conread position: | 223-901 |
Cow position: | chr11:15983600-15984297 (view UCSC Genome Browser custom track) |
Alignm length: | 701 |
Alignm identity: | 529 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 121 |
Conread position: | 223-903 |
Cow position: | chr11:85393828-85393139 (view UCSC Genome Browser custom track) |
Alignm length: | 699 |
Alignm identity: | 524 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 123 |
Conread position: | 233-551 |
Cow position: | chr11:8245301-8245624 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 110 |
Conread position: | 234-889 |
Cow position: | chr11:1496087-1495429 (view UCSC Genome Browser custom track) |
Alignm length: | 676 |
Alignm identity: | 501 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 21 |
Conread position: | 235-894 |
Cow position: | chr11:36744193-36743515 (view UCSC Genome Browser custom track) |
Alignm length: | 683 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 63 |
Conread position: | 235-903 |
Cow position: | chr11:17107699-17107010 (view UCSC Genome Browser custom track) |
Alignm length: | 693 |
Alignm identity: | 517 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 112 |
Conread position: | 241-453 |
Cow position: | chr11:38505611-38505399 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 161 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 102, 89 |
Conread position: | 241-738 |
Cow position: | chr11:19064255-19063754 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 105 |
Conread position: | 241-893 |
Cow position: | chr11:31874775-31874123 (view UCSC Genome Browser custom track) |
Alignm length: | 674 |
Alignm identity: | 496 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 139 |
Conread position: | 241-894 |
Cow position: | chr11:52419382-52420055 (view UCSC Genome Browser custom track) |
Alignm length: | 682 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 190 |
Conread position: | 241-894 |
Cow position: | chr11:67846577-67845905 (view UCSC Genome Browser custom track) |
Alignm length: | 676 |
Alignm identity: | 494 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 105 |
Conread position: | 241-899 |
Cow position: | chr11:28108144-28108806 (view UCSC Genome Browser custom track) |
Alignm length: | 671 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 102 |
Conread position: | 241-901 |
Cow position: | chr11:57628052-57627386 (view UCSC Genome Browser custom track) |
Alignm length: | 683 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 68 |
Conread position: | 241-903 |
Cow position: | chr11:3493005-3493669 (view UCSC Genome Browser custom track) |
Alignm length: | 683 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 103 |
Conread position: | 246-527 |
Cow position: | chr11:4041089-4040808 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 77 |
Conread position: | 246-642 |
Cow position: | chr11:32271315-32270912 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 104 |
Conread position: | 265-903 |
Cow position: | chr11:20734224-20733566 (view UCSC Genome Browser custom track) |
Alignm length: | 661 |
Alignm identity: | 487 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 81 |
Conread position: | 272-772 |
Cow position: | chr11:7116245-7116763 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 107 |
Conread position: | 273-894 |
Cow position: | chr11:64082057-64081418 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 483 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 73 |
Conread position: | 274-488 |
Cow position: | chr11:43733760-43733979 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 152 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 104, 0 |
Conread position: | 280-901 |
Cow position: | chr11:40775961-40775339 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 63 |
Conread position: | 286-894 |
Cow position: | chr11:63655298-63654673 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 60 |
Conread position: | 293-894 |
Cow position: | chr11:36762809-36763415 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 48 |
Conread position: | 294-863 |
Cow position: | chr11:42432199-42432768 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 49 |
Conread position: | 297-903 |
Cow position: | chr11:71329645-71330265 (view UCSC Genome Browser custom track) |
Alignm length: | 628 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 49 |
Show alignments to all cow chromosomes.