Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 20-378 |
| Cow position: | chr13:11763971-11763610 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 161, 9 |
| Conread position: | 21-372 |
| Cow position: | chr13:34767021-34766675 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 74 |
| Conread position: | 28-174 |
| Cow position: | chr13:11064548-11064404 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 65 |
| Conread position: | 28-491 |
| Cow position: | chr13:29202510-29202040 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 308 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 28-822 |
| Cow position: | chr13:31556863-31556069 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 178 |
| Conread position: | 28-903 |
| Cow position: | chr13:43983227-43982355 (view UCSC Genome Browser custom track) |
| Alignm length: | 898 |
| Alignm identity: | 646 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 30-567 |
| Cow position: | chr13:26843964-26844478 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 30-903 |
| Cow position: | chr13:34937348-34938208 (view UCSC Genome Browser custom track) |
| Alignm length: | 895 |
| Alignm identity: | 637 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 24 |
| Conread position: | 31-903 |
| Cow position: | chr13:20542192-20541302 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 659 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 81-378 |
| Cow position: | chr13:48357476-48357766 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 93-516 |
| Cow position: | chr13:46731804-46731386 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 116-642 |
| Cow position: | chr13:27922283-27921767 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 117-600 |
| Cow position: | chr13:19413168-19413631 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 321 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 123-776 |
| Cow position: | chr13:22185283-22184654 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 433 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 149-464 |
| Cow position: | chr13:34029039-34029369 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 211 |
| Conread position: | 183-491 |
| Cow position: | chr13:11064156-11063864 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 20 |
| Conread position: | 187-734 |
| Cow position: | chr13:34386652-34386098 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 203-633 |
| Cow position: | chr13:9044531-9044964 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 206-777 |
| Cow position: | chr13:35757276-35757858 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 15 |
| Conread position: | 206-903 |
| Cow position: | chr13:3654291-3653576 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 211-661 |
| Cow position: | chr13:34868777-34869232 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 134 |
| Conread position: | 215-894 |
| Cow position: | chr13:4483836-4484527 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 215-903 |
| Cow position: | chr13:32737780-32737080 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 23 |
| Conread position: | 216-901 |
| Cow position: | chr13:30238287-30238977 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 127 |
| Conread position: | 220-605 |
| Cow position: | chr13:33336372-33335995 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 21 |
| Conread position: | 220-903 |
| Cow position: | chr13:1593110-1592411 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 221-600 |
| Cow position: | chr13:4941136-4941512 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 221-901 |
| Cow position: | chr13:34325517-34324819 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 133 |
| Conread position: | 222-686 |
| Cow position: | chr13:34042321-34041855 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 222-901 |
| Cow position: | chr13:15924335-15923639 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 28 |
| Conread position: | 222-903 |
| Cow position: | chr13:23003260-23002554 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 19 |
| Conread position: | 222-903 |
| Cow position: | chr13:30303324-30304027 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 121 |
| Conread position: | 223-339 |
| Cow position: | chr13:34142614-34142497 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 223-339 |
| Cow position: | chr13:34693214-34693331 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 223-358 |
| Cow position: | chr13:2908384-2908250 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 117 |
| Conread position: | 223-467 |
| Cow position: | chr13:22766073-22766318 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 120, 132 |
| Conread position: | 223-782 |
| Cow position: | chr13:31734043-31733470 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 123 |
| Conread position: | 223-903 |
| Cow position: | chr13:30244636-30243938 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 123 |
| Conread position: | 223-903 |
| Cow position: | chr13:47229959-47229261 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 124 |
| Conread position: | 224-894 |
| Cow position: | chr13:21840152-21839467 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 224-901 |
| Cow position: | chr13:6668070-6667393 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 115 |
| Conread position: | 233-901 |
| Cow position: | chr13:49973736-49974417 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 234-901 |
| Cow position: | chr13:32985293-32984610 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 107 |
| Conread position: | 235-580 |
| Cow position: | chr13:3058057-3057706 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 235-896 |
| Cow position: | chr13:60466390-60467060 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 235-903 |
| Cow position: | chr13:2388765-2388071 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 235-903 |
| Cow position: | chr13:17308528-17309216 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 236-454 |
| Cow position: | chr13:2296758-2296543 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 118, 73 |
| Conread position: | 236-903 |
| Cow position: | chr13:50109515-50110194 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 241-642 |
| Cow position: | chr13:13324809-13325206 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 246-556 |
| Cow position: | chr13:27652676-27652985 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 250-746 |
| Cow position: | chr13:30656904-30656401 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 274-735 |
| Cow position: | chr13:41315952-41316427 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 278-903 |
| Cow position: | chr13:58118810-58118166 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 279-901 |
| Cow position: | chr13:31612204-31611566 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 280-901 |
| Cow position: | chr13:15520394-15519766 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 282-894 |
| Cow position: | chr13:32545484-32546114 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 61 |
Show alignments to all cow chromosomes.