Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 10-290 |
| Cow position: | chr16:336081-336371 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 20-212 |
| Cow position: | chr16:30304979-30305175 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 20-471 |
| Cow position: | chr16:5889907-5890339 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 45 |
| Conread position: | 20-770 |
| Cow position: | chr16:9930334-9931071 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 62 |
| Conread position: | 28-259 |
| Cow position: | chr16:18499324-18499094 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 156, 66 |
| Conread position: | 28-496 |
| Cow position: | chr16:18764218-18763774 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 59 |
| Conread position: | 30-312 |
| Cow position: | chr16:49256737-49256456 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 30-519 |
| Cow position: | chr16:25156504-25155998 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 30-604 |
| Cow position: | chr16:49235430-49234867 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 64 |
| Conread position: | 30-657 |
| Cow position: | chr16:23807823-23808436 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 32-894 |
| Cow position: | chr16:25257324-25258219 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 656 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 33-894 |
| Cow position: | chr16:29033433-29034315 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 672 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 36-604 |
| Cow position: | chr16:16272208-16271648 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 58 |
| Conread position: | 70-338 |
| Cow position: | chr16:37457160-37456885 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 105-590 |
| Cow position: | chr16:47473049-47473525 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 331 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 124-608 |
| Cow position: | chr16:42739617-42739144 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 124-894 |
| Cow position: | chr16:34529796-34530579 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 149-659 |
| Cow position: | chr16:48915652-48915137 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 150-712 |
| Cow position: | chr16:26516920-26516339 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 375 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 168-369 |
| Cow position: | chr16:20254778-20254586 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 183-849 |
| Cow position: | chr16:47563944-47564583 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 187-903 |
| Cow position: | chr16:25085185-25085893 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 193-475 |
| Cow position: | chr16:14045166-14045451 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 203-608 |
| Cow position: | chr16:15184364-15184759 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 13 |
| Conread position: | 203-903 |
| Cow position: | chr16:43897710-43896999 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 206-370 |
| Cow position: | chr16:29675816-29675651 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 212-903 |
| Cow position: | chr16:10376017-10375323 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 134 |
| Conread position: | 216-903 |
| Cow position: | chr16:31592336-31591642 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 220-591 |
| Cow position: | chr16:5483900-5484269 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-633 |
| Cow position: | chr16:23252930-23252516 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 220-871 |
| Cow position: | chr16:10203853-10203209 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-872 |
| Cow position: | chr16:32307-32949 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 124 |
| Conread position: | 220-901 |
| Cow position: | chr16:10437818-10438526 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 21 |
| Conread position: | 220-901 |
| Cow position: | chr16:23982887-23983571 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 31 |
| Conread position: | 220-903 |
| Cow position: | chr16:8816527-8815829 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 220-903 |
| Cow position: | chr16:12538348-12537650 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 220-903 |
| Cow position: | chr16:25441201-25441905 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-903 |
| Cow position: | chr16:25457888-25457185 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-903 |
| Cow position: | chr16:27734215-27733521 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 220-903 |
| Cow position: | chr16:29046599-29047300 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-903 |
| Cow position: | chr16:40296601-40295900 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 221-584 |
| Cow position: | chr16:2239163-2238815 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 122 |
| Conread position: | 221-600 |
| Cow position: | chr16:53045924-53046308 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 221-889 |
| Cow position: | chr16:25341544-25342230 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 221-903 |
| Cow position: | chr16:2411390-2410689 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 222-629 |
| Cow position: | chr16:15566320-15566730 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 222-893 |
| Cow position: | chr16:2483564-2482873 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 222-894 |
| Cow position: | chr16:26663328-26664017 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 222-901 |
| Cow position: | chr16:407453-406765 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 222-901 |
| Cow position: | chr16:2727710-2727014 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 124 |
| Conread position: | 222-901 |
| Cow position: | chr16:28471524-28470827 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 97 |
| Conread position: | 222-903 |
| Cow position: | chr16:1567876-1567176 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 124 |
| Conread position: | 223-356 |
| Cow position: | chr16:1431736-1431868 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 223-362 |
| Cow position: | chr16:50506767-50506907 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 114, 121 |
| Conread position: | 223-369 |
| Cow position: | chr16:14430172-14430318 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 223-903 |
| Cow position: | chr16:5661422-5662119 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 120 |
| Conread position: | 234-431 |
| Cow position: | chr16:18687539-18687341 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 124, 110 |
| Conread position: | 235-580 |
| Cow position: | chr16:31832215-31832566 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 235-627 |
| Cow position: | chr16:25188224-25188612 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 235-889 |
| Cow position: | chr16:28170781-28170110 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 241-893 |
| Cow position: | chr16:25170948-25171615 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 241-894 |
| Cow position: | chr16:4302741-4302075 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 90 |
| Conread position: | 241-903 |
| Cow position: | chr16:41163469-41162795 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 98 |
| Conread position: | 269-664 |
| Cow position: | chr16:24105330-24105726 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 271-490 |
| Cow position: | chr16:36232112-36231897 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 274-600 |
| Cow position: | chr16:25892348-25892673 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 62 |
| Conread position: | 275-903 |
| Cow position: | chr16:14666182-14665533 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 283-811 |
| Cow position: | chr16:836684-837233 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 285-878 |
| Cow position: | chr16:18498677-18498038 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 61 |
Show alignments to all cow chromosomes.