Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 6-549 |
| Cow position: | chr17:12670138-12669598 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 28-536 |
| Cow position: | chr17:42264879-42265394 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 38 |
| Conread position: | 28-751 |
| Cow position: | chr17:18300439-18299704 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 74 |
| Conread position: | 28-894 |
| Cow position: | chr17:19019534-19020411 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 57 |
| Conread position: | 29-226 |
| Cow position: | chr17:20402043-20402241 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 157, 117 |
| Conread position: | 29-250 |
| Cow position: | chr17:22557964-22558183 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 31-642 |
| Cow position: | chr17:14308099-14307488 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 48-470 |
| Cow position: | chr17:20487981-20488398 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 55-903 |
| Cow position: | chr17:4082043-4082873 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 149-735 |
| Cow position: | chr17:15384368-15384950 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 167-820 |
| Cow position: | chr17:2173988-2174604 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 6 |
| Conread position: | 168-369 |
| Cow position: | chr17:27345909-27346098 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 5 |
| Conread position: | 173-903 |
| Cow position: | chr17:16857418-16856669 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 193-903 |
| Cow position: | chr17:14040903-14040191 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 204-666 |
| Cow position: | chr17:21354226-21354690 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 215-894 |
| Cow position: | chr17:40804967-40805648 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 215-901 |
| Cow position: | chr17:2579765-2580464 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 216-373 |
| Cow position: | chr17:13856622-13856465 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 124 |
| Conread position: | 216-443 |
| Cow position: | chr17:25737814-25738040 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 135, 25 |
| Conread position: | 216-601 |
| Cow position: | chr17:15850548-15850937 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 25 |
| Conread position: | 220-493 |
| Cow position: | chr17:19269211-19268940 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 220-901 |
| Cow position: | chr17:18103530-18102844 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 220-903 |
| Cow position: | chr17:14894308-14895005 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 221-412 |
| Cow position: | chr17:24634102-24634294 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 221-413 |
| Cow position: | chr17:2248435-2248243 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 133, 10 |
| Conread position: | 221-746 |
| Cow position: | chr17:1382666-1382132 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 125 |
| Conread position: | 221-889 |
| Cow position: | chr17:250311-250995 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 126 |
| Conread position: | 221-889 |
| Cow position: | chr17:20087589-20086919 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 222-901 |
| Cow position: | chr17:24029844-24029158 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 121 |
| Conread position: | 222-903 |
| Cow position: | chr17:3642680-3641986 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 222-903 |
| Cow position: | chr17:6068716-6069403 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 222-903 |
| Cow position: | chr17:6260000-6260706 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 36 |
| Conread position: | 222-903 |
| Cow position: | chr17:11087568-11086873 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 223-369 |
| Cow position: | chr17:20073089-20072943 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 223-834 |
| Cow position: | chr17:22132385-22133004 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 223-889 |
| Cow position: | chr17:6119858-6120545 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-894 |
| Cow position: | chr17:15143217-15142520 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 123 |
| Conread position: | 223-902 |
| Cow position: | chr17:8209256-8209954 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 130 |
| Conread position: | 223-903 |
| Cow position: | chr17:1880248-1880946 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 30 |
| Conread position: | 223-903 |
| Cow position: | chr17:23324304-23323604 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 123 |
| Conread position: | 225-903 |
| Cow position: | chr17:4060256-4060945 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 234-889 |
| Cow position: | chr17:228147-227479 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 108 |
| Conread position: | 234-894 |
| Cow position: | chr17:34156289-34156956 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 109 |
| Conread position: | 234-898 |
| Cow position: | chr17:5226783-5227460 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 189 |
| Conread position: | 235-492 |
| Cow position: | chr17:43952402-43952143 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 235-894 |
| Cow position: | chr17:2262263-2262943 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 189 |
| Conread position: | 235-899 |
| Cow position: | chr17:31767878-31767198 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 235-903 |
| Cow position: | chr17:15435952-15436641 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 241-640 |
| Cow position: | chr17:20665558-20665153 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 241-901 |
| Cow position: | chr17:24782335-24783001 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 148 |
| Conread position: | 241-903 |
| Cow position: | chr17:14216858-14216187 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 245-901 |
| Cow position: | chr17:15156792-15156124 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 29 |
| Conread position: | 269-901 |
| Cow position: | chr17:15324025-15324675 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 274-611 |
| Cow position: | chr17:13695785-13695449 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 65 |
| Conread position: | 275-595 |
| Cow position: | chr17:11376582-11376257 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 276-605 |
| Cow position: | chr17:20183642-20183957 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 279-462 |
| Cow position: | chr17:14051904-14051720 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 52 |
Show alignments to all cow chromosomes.