Cow genome map


           Conread name:
           Tra1-TCH01G050069
        

               Conread position:
               1-263
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               20, 95
               

               Conread position:
               9-504
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 11
               

               Conread position:
               10-864
               

               Cow position:
               
               

               Alignm length:
               862
               

               Alignm identity:
               602
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 78
               

               Conread position:
               13-310
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               171, 15
               

               Conread position:
               13-898
               

               Cow position:
               
               

               Alignm length:
               907
               

               Alignm identity:
               567
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 7
               

               Conread position:
               15-493
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               307
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               20-269
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 73
               

               Conread position:
               20-897
               

               Cow position:
               
               

               Alignm length:
               898
               

               Alignm identity:
               637
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 131
               

               Conread position:
               28-370
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               255
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               61, 252
               

               Conread position:
               28-411
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               78, 66
               

               Conread position:
               29-594
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 63
               

               Conread position:
               30-259
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               156, 62
               

               Conread position:
               30-266
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               163, 54
               

               Conread position:
               30-832
               

               Cow position:
               
               

               Alignm length:
               842
               

               Alignm identity:
               596
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 73
               

               Conread position:
               30-876
               

               Cow position:
               
               

               Alignm length:
               863
               

               Alignm identity:
               618
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 63
               

               Conread position:
               32-261
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               153, 14
               

               Conread position:
               39-726
               

               Cow position:
               
               

               Alignm length:
               706
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 56
               

               Conread position:
               43-893
               

               Cow position:
               
               

               Alignm length:
               881
               

               Alignm identity:
               576
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 41
               

               Conread position:
               54-396
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 40
               

               Conread position:
               55-266
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               158, 39
               

               Conread position:
               73-901
               

               Cow position:
               
               

               Alignm length:
               847
               

               Alignm identity:
               596
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 30
               

               Conread position:
               74-448
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 20
               

               Conread position:
               74-603
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 20
               

               Conread position:
               99-376
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               43, 75
               

               Conread position:
               104-557
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               80, 130
               

               Conread position:
               117-507
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               271
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               68, 131
               

               Conread position:
               122-869
               

               Cow position:
               
               

               Alignm length:
               767
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 70
               

               Conread position:
               133-903
               

               Cow position:
               
               

               Alignm length:
               792
               

               Alignm identity:
               571
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 67
               

               Conread position:
               151-891
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 34
               

               Conread position:
               168-369
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               68, 5
               

               Conread position:
               179-892
               

               Cow position:
               
               

               Alignm length:
               748
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 73
               

               Conread position:
               183-415
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               38, 30
               

               Conread position:
               192-788
               

               Cow position:
               
               

               Alignm length:
               620
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 24
               

               Conread position:
               198-903
               

               Cow position:
               
               

               Alignm length:
               735
               

               Alignm identity:
               549
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 19
               

               Conread position:
               199-901
               

               Cow position:
               
               

               Alignm length:
               721
               

               Alignm identity:
               533
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 23
               

               Conread position:
               207-894
               

               Cow position:
               
               

               Alignm length:
               708
               

               Alignm identity:
               540
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 43
               

               Conread position:
               207-903
               

               Cow position:
               
               

               Alignm length:
               711
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 34
               

               Conread position:
               208-901
               

               Cow position:
               
               

               Alignm length:
               705
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 31
               

               Conread position:
               212-559
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 133
               

               Conread position:
               212-594
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 106
               

               Conread position:
               212-901
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 35
               

               Conread position:
               212-903
               

               Cow position:
               
               

               Alignm length:
               718
               

               Alignm identity:
               528
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 91
               

               Conread position:
               215-901
               

               Cow position:
               
               

               Alignm length:
               708
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 26
               

               Conread position:
               218-651
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 11
               

               Conread position:
               220-534
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               220-790
               

               Cow position:
               
               

               Alignm length:
               587
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 128
               

               Conread position:
               220-888
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 124
               

               Conread position:
               220-901
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               220-901
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 21
               

               Conread position:
               220-901
               

               Cow position:
               
               

               Alignm length:
               704
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 21
               

               Conread position:
               220-903
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               538
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               221-362
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               105
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               221-703
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 122
               

               Conread position:
               221-735
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 122
               

               Conread position:
               221-803
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 125
               

               Conread position:
               221-894
               

               Cow position:
               
               

               Alignm length:
               698
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 121
               

               Conread position:
               221-894
               

               Cow position:
               
               

               Alignm length:
               695
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 122
               

               Conread position:
               221-901
               

               Cow position:
               
               

               Alignm length:
               701
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               221-903
               

               Cow position:
               
               

               Alignm length:
               705
               

               Alignm identity:
               543
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               222-384
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               135, 124
               

               Conread position:
               222-460
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               48, 123
               

               Conread position:
               222-489
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 19
               

               Conread position:
               222-589
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 19
               

               Conread position:
               222-894
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 20
               

               Conread position:
               222-903
               

               Cow position:
               
               

               Alignm length:
               706
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 121
               

               Conread position:
               222-903
               

               Cow position:
               
               

               Alignm length:
               704
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 19
               

               Conread position:
               223-358
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               13, 121
               

               Conread position:
               223-368
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               139, 25
               

               Conread position:
               223-369
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               23, 121
               

               Conread position:
               223-554
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 120
               

               Conread position:
               223-611
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 120
               

               Conread position:
               223-660
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 28
               

               Conread position:
               223-888
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 120
               

               Conread position:
               223-889
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 86
               

               Conread position:
               223-889
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 121
               

               Conread position:
               223-894
               

               Cow position:
               
               

               Alignm length:
               693
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 123
               

               Conread position:
               223-901
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 69
               

               Conread position:
               223-903
               

               Cow position:
               
               

               Alignm length:
               701
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 123
               

               Conread position:
               223-903
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 123
               

               Conread position:
               223-903
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 18
               

               Conread position:
               223-903
               

               Cow position:
               
               

               Alignm length:
               699
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 121
               

               Conread position:
               233-901
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 111
               

               Conread position:
               234-633
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 110
               

               Conread position:
               235-362
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               7, 109
               

               Conread position:
               235-523
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 109
               

               Conread position:
               235-765
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 109
               

               Conread position:
               241-515
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               206
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               115, 24
               

               Conread position:
               241-605
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 105
               

               Conread position:
               241-765
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 102
               

               Conread position:
               241-897
               

               Cow position:
               
               

               Alignm length:
               677
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 102
               

               Conread position:
               241-903
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 102
               

               Conread position:
               249-901
               

               Cow position:
               
               

               Alignm length:
               673
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 94
               

               Conread position:
               257-891
               

               Cow position:
               
               

               Alignm length:
               653
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 158
               

               Conread position:
               259-588
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 58
               

               Conread position:
               274-669
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 65
               

               Conread position:
               274-901
               

               Cow position:
               
               

               Alignm length:
               666
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 72
               

               Conread position:
               275-896
               

               Cow position:
               
               

               Alignm length:
               634
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 48
               

               Conread position:
               276-493
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               104, 47
               

               Conread position:
               276-794
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 70
               

               Conread position:
               280-633
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 66
               

               Conread position:
               283-555
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               70, 54
               

               Conread position:
               284-608
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 59
               
Show alignments to all cow chromosomes.