Cow genome map

Conread name: Tra1-TCH01G050069

Conread position: 1-263
Cow position: chr2:3836602-3836337 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 95

Conread position: 9-504
Cow position: chr2:5963489-5962985 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 11

Conread position: 10-864
Cow position: chr2:11729477-11730289 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 78

Conread position: 13-310
Cow position: chr2:77208655-77208950 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 195
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 171, 15

Conread position: 13-898
Cow position: chr2:40538108-40538968 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 7

Conread position: 15-493
Cow position: chr2:63977911-63978388 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 307
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 17, 66

Conread position: 20-269
Cow position: chr2:782124-781878 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 73

Conread position: 20-897
Cow position: chr2:42333251-42332380 (view UCSC Genome Browser custom track)
Alignm length: 898
Alignm identity: 637
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 131

Conread position: 28-370
Cow position: chr2:63292529-63292175 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 61, 252

Conread position: 28-411
Cow position: chr2:28747771-28748148 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 78, 66

Conread position: 29-594
Cow position: chr2:28643189-28642642 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 63

Conread position: 30-259
Cow position: chr2:14822450-14822671 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 156, 62

Conread position: 30-266
Cow position: chr2:15577620-15577394 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 163, 54

Conread position: 30-832
Cow position: chr2:34564990-34564188 (view UCSC Genome Browser custom track)
Alignm length: 842
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 73

Conread position: 30-876
Cow position: chr2:5485340-5484519 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 618
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 63

Conread position: 32-261
Cow position: chr2:16289177-16289401 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 153, 14

Conread position: 39-726
Cow position: chr2:39622253-39622931 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 56

Conread position: 43-893
Cow position: chr2:29029781-29030626 (view UCSC Genome Browser custom track)
Alignm length: 881
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 41

Conread position: 54-396
Cow position: chr2:1362803-1363144 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 40

Conread position: 55-266
Cow position: chr2:41149942-41150150 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 158, 39

Conread position: 73-901
Cow position: chr2:36030678-36029869 (view UCSC Genome Browser custom track)
Alignm length: 847
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 30

Conread position: 74-448
Cow position: chr2:7902686-7903051 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 20

Conread position: 74-603
Cow position: chr2:35355352-35355885 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 20

Conread position: 99-376
Cow position: chr2:78741986-78742273 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 43, 75

Conread position: 104-557
Cow position: chr2:53553461-53553923 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 296
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 130

Conread position: 117-507
Cow position: chr2:20920737-20920358 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 271
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 131

Conread position: 122-869
Cow position: chr2:45968243-45967521 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 70

Conread position: 133-903
Cow position: chr2:36053271-36052505 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 151-891
Cow position: chr2:11692300-11693015 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 34

Conread position: 168-369
Cow position: chr2:422832-423024 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 5

Conread position: 179-892
Cow position: chr2:49604715-49605433 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 73

Conread position: 183-415
Cow position: chr2:51999200-51998965 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 38, 30

Conread position: 192-788
Cow position: chr2:199008-198402 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 24

Conread position: 198-903
Cow position: chr2:53329539-53330265 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 199-901
Cow position: chr2:10268871-10268157 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 23

Conread position: 207-894
Cow position: chr2:16900045-16900745 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 43

Conread position: 207-903
Cow position: chr2:13045910-13045210 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 34

Conread position: 208-901
Cow position: chr2:47603451-47602767 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 31

Conread position: 212-559
Cow position: chr2:54737297-54737651 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 133

Conread position: 212-594
Cow position: chr2:78762259-78762626 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 106

Conread position: 212-901
Cow position: chr2:22077576-22078284 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 35

Conread position: 212-903
Cow position: chr2:41172467-41173171 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 91

Conread position: 215-901
Cow position: chr2:282888-282189 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 26

Conread position: 218-651
Cow position: chr2:5905059-5904627 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 11

Conread position: 220-534
Cow position: chr2:52062476-52062787 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-790
Cow position: chr2:175727-175156 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 128

Conread position: 220-888
Cow position: chr2:2088372-2087687 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 124

Conread position: 220-901
Cow position: chr2:10186424-10185725 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 220-901
Cow position: chr2:11159318-11158618 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 21

Conread position: 220-901
Cow position: chr2:12224505-12223812 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 21

Conread position: 220-903
Cow position: chr2:36980184-36980884 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 21

Conread position: 221-362
Cow position: chr2:57141884-57141743 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 221-703
Cow position: chr2:5474318-5474814 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 221-735
Cow position: chr2:49590203-49590731 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 221-803
Cow position: chr2:80955834-80955237 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 125

Conread position: 221-894
Cow position: chr2:3324762-3324069 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 121

Conread position: 221-894
Cow position: chr2:49472049-49472741 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 122

Conread position: 221-901
Cow position: chr2:28793062-28793751 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 20

Conread position: 221-903
Cow position: chr2:8118346-8119045 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 20

Conread position: 222-384
Cow position: chr2:4926366-4926203 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 135, 124

Conread position: 222-460
Cow position: chr2:69584818-69584578 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 123

Conread position: 222-489
Cow position: chr2:50983418-50983152 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 19

Conread position: 222-589
Cow position: chr2:28650421-28650051 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 19

Conread position: 222-894
Cow position: chr2:10732957-10732279 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 20

Conread position: 222-903
Cow position: chr2:24146669-24147367 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 121

Conread position: 222-903
Cow position: chr2:65938640-65937949 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 19

Conread position: 223-358
Cow position: chr2:30381391-30381525 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 121

Conread position: 223-368
Cow position: chr2:44346526-44346667 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 139, 25

Conread position: 223-369
Cow position: chr2:2363995-2364141 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 121

Conread position: 223-554
Cow position: chr2:39421383-39421717 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-611
Cow position: chr2:57588500-57588893 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-660
Cow position: chr2:212417-211979 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 28

Conread position: 223-888
Cow position: chr2:57335000-57335683 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 223-889
Cow position: chr2:41686318-41686996 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 86

Conread position: 223-889
Cow position: chr2:52616274-52616959 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 121

Conread position: 223-894
Cow position: chr2:4403353-4402665 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 123

Conread position: 223-901
Cow position: chr2:5870547-5869886 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 69

Conread position: 223-903
Cow position: chr2:2412992-2412294 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 123

Conread position: 223-903
Cow position: chr2:10611822-10611137 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 123

Conread position: 223-903
Cow position: chr2:44991485-44990800 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 18

Conread position: 223-903
Cow position: chr2:47038610-47037919 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 121

Conread position: 233-901
Cow position: chr2:80293134-80292460 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 111

Conread position: 234-633
Cow position: chr2:26921499-26921892 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 110

Conread position: 235-362
Cow position: chr2:51990715-51990588 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 7, 109

Conread position: 235-523
Cow position: chr2:44091116-44091410 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 109

Conread position: 235-765
Cow position: chr2:51990433-51989895 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 109

Conread position: 241-515
Cow position: chr2:67419477-67419197 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 115, 24

Conread position: 241-605
Cow position: chr2:25030654-25030289 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 105

Conread position: 241-765
Cow position: chr2:2380930-2381464 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 102

Conread position: 241-897
Cow position: chr2:9907735-9908409 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 102

Conread position: 241-903
Cow position: chr2:59413858-59413181 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 102

Conread position: 249-901
Cow position: chr2:19011177-19011846 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 94

Conread position: 257-891
Cow position: chr2:781595-780952 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 158

Conread position: 259-588
Cow position: chr2:24922239-24922568 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 58

Conread position: 274-669
Cow position: chr2:16290197-16290591 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 65

Conread position: 274-901
Cow position: chr2:3835113-3834461 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 72

Conread position: 275-896
Cow position: chr2:14822979-14823588 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 48

Conread position: 276-493
Cow position: chr2:903893-904098 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 104, 47

Conread position: 276-794
Cow position: chr2:28620167-28619638 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 70

Conread position: 280-633
Cow position: chr2:42671125-42670770 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 66

Conread position: 283-555
Cow position: chr2:81209324-81209050 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 54

Conread position: 284-608
Cow position: chr2:72597477-72597800 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 59

Show alignments to all cow chromosomes.