Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 28-610 |
| Cow position: | chr21:21926073-21925496 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 57 |
| Conread position: | 29-268 |
| Cow position: | chr21:4184086-4184323 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 160, 47 |
| Conread position: | 30-266 |
| Cow position: | chr21:9870321-9870545 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 30-603 |
| Cow position: | chr21:359618-360177 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 64 |
| Conread position: | 30-903 |
| Cow position: | chr21:9892193-9893027 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 603 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 36-756 |
| Cow position: | chr21:2710776-2711473 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 46-903 |
| Cow position: | chr21:29366-30213 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 637 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 48 |
| Conread position: | 73-768 |
| Cow position: | chr21:23861609-23862316 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 104-560 |
| Cow position: | chr21:1689911-1689436 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 296 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 114-903 |
| Cow position: | chr21:4077184-4077969 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 117-558 |
| Cow position: | chr21:25975598-25976056 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 238 |
| Conread position: | 117-888 |
| Cow position: | chr21:23602883-23603661 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 220 |
| Conread position: | 121-903 |
| Cow position: | chr21:21915026-21915817 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 124-617 |
| Cow position: | chr21:27565737-27566243 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 201 |
| Conread position: | 126-493 |
| Cow position: | chr21:217259-217613 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 210, 28 |
| Conread position: | 148-903 |
| Cow position: | chr21:40271318-40270539 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 205 |
| Conread position: | 150-368 |
| Cow position: | chr21:6109926-6110148 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 6, 78 |
| Conread position: | 150-786 |
| Cow position: | chr21:4093864-4094519 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 153-901 |
| Cow position: | chr21:21944371-21943631 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 162-659 |
| Cow position: | chr21:23812553-23813056 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 115 |
| Conread position: | 168-369 |
| Cow position: | chr21:34293414-34293606 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 198-903 |
| Cow position: | chr21:2883327-2882602 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 212-894 |
| Cow position: | chr21:11453233-11452532 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 212-903 |
| Cow position: | chr21:37046043-37046756 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 215-903 |
| Cow position: | chr21:10850515-10851215 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 35 |
| Conread position: | 220-622 |
| Cow position: | chr21:30562245-30562646 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-633 |
| Cow position: | chr21:31559213-31558805 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-664 |
| Cow position: | chr21:28735671-28736120 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 202 |
| Conread position: | 220-810 |
| Cow position: | chr21:30599483-30598880 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-903 |
| Cow position: | chr21:35144199-35144893 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 221-438 |
| Cow position: | chr21:26650477-26650695 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 221-582 |
| Cow position: | chr21:33251950-33252308 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 221-602 |
| Cow position: | chr21:27282830-27283214 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 20 |
| Conread position: | 221-660 |
| Cow position: | chr21:11406560-11406116 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 221-664 |
| Cow position: | chr21:4091085-4091532 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 56 |
| Conread position: | 221-901 |
| Cow position: | chr21:13313209-13313889 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 221-903 |
| Cow position: | chr21:146366-147065 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 222-355 |
| Cow position: | chr21:2502334-2502468 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 222-891 |
| Cow position: | chr21:48116545-48117220 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 222-894 |
| Cow position: | chr21:467333-467994 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 124 |
| Conread position: | 222-894 |
| Cow position: | chr21:4589547-4588868 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 36 |
| Conread position: | 222-901 |
| Cow position: | chr21:3779210-3779900 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 123 |
| Conread position: | 222-903 |
| Cow position: | chr21:10567113-10567806 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 223-889 |
| Cow position: | chr21:37371683-37372357 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 118 |
| Conread position: | 223-889 |
| Cow position: | chr21:39425501-39426179 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 129 |
| Conread position: | 225-572 |
| Cow position: | chr21:7267091-7266740 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 225-901 |
| Cow position: | chr21:2416660-2417349 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 85 |
| Conread position: | 234-449 |
| Cow position: | chr21:6340015-6340230 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 120, 109 |
| Conread position: | 234-602 |
| Cow position: | chr21:2511344-2511717 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 109 |
| Conread position: | 234-656 |
| Cow position: | chr21:2476093-2475665 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 235-453 |
| Cow position: | chr21:46916037-46916251 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 108, 118 |
| Conread position: | 235-889 |
| Cow position: | chr21:12055552-12054884 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 241-901 |
| Cow position: | chr21:11506052-11506728 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 274-538 |
| Cow position: | chr21:12803560-12803297 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 274-803 |
| Cow position: | chr21:47949555-47950095 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 108 |
| Conread position: | 274-903 |
| Cow position: | chr21:1287729-1287082 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 69 |
| Conread position: | 275-750 |
| Cow position: | chr21:6622080-6622568 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 106 |
| Conread position: | 276-583 |
| Cow position: | chr21:18819672-18819358 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 280-605 |
| Cow position: | chr21:27070766-27070436 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 281-903 |
| Cow position: | chr21:1074577-1075201 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 98 |
| Conread position: | 291-903 |
| Cow position: | chr21:1192264-1192893 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 55 |
Show alignments to all cow chromosomes.