Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 13-901 |
| Cow position: | chr24:12206157-12205261 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 9 |
| Conread position: | 28-400 |
| Cow position: | chr24:36708417-36708801 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 18 |
| Conread position: | 28-514 |
| Cow position: | chr24:14333630-14334115 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 29-373 |
| Cow position: | chr24:17313377-17313038 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 159, 58 |
| Conread position: | 30-266 |
| Cow position: | chr24:12797274-12797039 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 154, 57 |
| Conread position: | 30-529 |
| Cow position: | chr24:6336009-6336506 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 30-623 |
| Cow position: | chr24:16648823-16648224 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 64 |
| Conread position: | 30-903 |
| Cow position: | chr24:36559598-36558723 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 657 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 31-772 |
| Cow position: | chr24:6538115-6538867 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 29 |
| Conread position: | 57-903 |
| Cow position: | chr24:38637725-38638588 (view UCSC Genome Browser custom track) |
| Alignm length: | 891 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 104-488 |
| Cow position: | chr24:7090946-7090547 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 105-604 |
| Cow position: | chr24:13302310-13301783 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 145 |
| Conread position: | 108-368 |
| Cow position: | chr24:32332260-32332523 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 108-559 |
| Cow position: | chr24:16472132-16472593 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 117-777 |
| Cow position: | chr24:6669903-6669231 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 131 |
| Conread position: | 117-893 |
| Cow position: | chr24:6048839-6049583 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 122-328 |
| Cow position: | chr24:43889559-43889758 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 149-433 |
| Cow position: | chr24:13533241-13532965 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 150-417 |
| Cow position: | chr24:583445-583181 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 103 |
| Conread position: | 191-525 |
| Cow position: | chr24:12232651-12232326 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 198-415 |
| Cow position: | chr24:37217347-37217558 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 215-894 |
| Cow position: | chr24:4415181-4414494 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 220-889 |
| Cow position: | chr24:22971446-22972124 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-901 |
| Cow position: | chr24:12335419-12334712 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-901 |
| Cow position: | chr24:19833741-19834441 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 30 |
| Conread position: | 220-903 |
| Cow position: | chr24:17696622-17695933 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-903 |
| Cow position: | chr24:29187639-29188340 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 221-894 |
| Cow position: | chr24:12484968-12484279 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 41 |
| Conread position: | 222-595 |
| Cow position: | chr24:40549223-40549593 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 121 |
| Conread position: | 222-608 |
| Cow position: | chr24:12130617-12130233 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 71 |
| Conread position: | 222-903 |
| Cow position: | chr24:12086556-12087252 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 121 |
| Conread position: | 223-369 |
| Cow position: | chr24:35838264-35838118 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 223-903 |
| Cow position: | chr24:43814115-43814813 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 224-901 |
| Cow position: | chr24:33933725-33934419 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 129 |
| Conread position: | 234-901 |
| Cow position: | chr24:13188535-13189217 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 109 |
| Conread position: | 235-470 |
| Cow position: | chr24:6434600-6434839 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 235-602 |
| Cow position: | chr24:33738978-33738604 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 189 |
| Conread position: | 235-798 |
| Cow position: | chr24:6646062-6646646 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 235-848 |
| Cow position: | chr24:44017895-44018525 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 235-901 |
| Cow position: | chr24:14390190-14389500 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 88 |
| Conread position: | 235-903 |
| Cow position: | chr24:5992867-5992178 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 111 |
| Conread position: | 236-559 |
| Cow position: | chr24:7061758-7062086 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 107 |
| Conread position: | 241-459 |
| Cow position: | chr24:8030520-8030739 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 84, 113 |
| Conread position: | 241-636 |
| Cow position: | chr24:22793541-22793945 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 106 |
| Conread position: | 241-894 |
| Cow position: | chr24:9188363-9187694 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 241-902 |
| Cow position: | chr24:29305954-29305273 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 581 |
| Conread position: | 243-894 |
| Cow position: | chr24:6024732-6024069 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 78 |
| Conread position: | 244-447 |
| Cow position: | chr24:30900750-30900555 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 248-436 |
| Cow position: | chr24:16084279-16084090 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 108, 98 |
| Conread position: | 251-664 |
| Cow position: | chr24:1449638-1450040 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 103 |
| Conread position: | 258-609 |
| Cow position: | chr24:14872571-14872216 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 269-903 |
| Cow position: | chr24:6660098-6659449 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 67 |
| Conread position: | 274-579 |
| Cow position: | chr24:12796806-12796511 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 275-894 |
| Cow position: | chr24:6084474-6085099 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 294-894 |
| Cow position: | chr24:23505440-23504826 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 52 |
Show alignments to all cow chromosomes.