Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 3-535 |
| Cow position: | chr28:14913615-14914137 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 17 |
| Conread position: | 10-184 |
| Cow position: | chr28:11356951-11356778 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 13-327 |
| Cow position: | chr28:29092463-29092146 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 172, 7 |
| Conread position: | 29-596 |
| Cow position: | chr28:5813135-5813703 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 20 |
| Conread position: | 30-251 |
| Cow position: | chr28:7817600-7817810 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 143, 42 |
| Conread position: | 30-656 |
| Cow position: | chr28:5797884-5798497 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 62 |
| Conread position: | 31-375 |
| Cow position: | chr28:21359459-21359806 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 63 |
| Conread position: | 31-866 |
| Cow position: | chr28:10647262-10646432 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 606 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 179 |
| Conread position: | 36-261 |
| Cow position: | chr28:5764698-5764907 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 152, 30 |
| Conread position: | 36-279 |
| Cow position: | chr28:24704363-24704610 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 139, 58 |
| Conread position: | 41-869 |
| Cow position: | chr28:7789823-7788976 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 98-414 |
| Cow position: | chr28:10617631-10617321 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 88, 7 |
| Conread position: | 103-312 |
| Cow position: | chr28:8721158-8720946 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 6, 117 |
| Conread position: | 112-297 |
| Cow position: | chr28:14946842-14947026 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 117-549 |
| Cow position: | chr28:5801196-5801640 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 296 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 109, 276 |
| Conread position: | 117-725 |
| Cow position: | chr28:10497810-10497209 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 118-330 |
| Cow position: | chr28:29436657-29436441 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 122-534 |
| Cow position: | chr28:3020527-3020123 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 14 |
| Conread position: | 122-581 |
| Cow position: | chr28:10230005-10229551 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 138-760 |
| Cow position: | chr28:2989013-2988375 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 152-903 |
| Cow position: | chr28:10071528-10072285 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 203-901 |
| Cow position: | chr28:22260852-22260144 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 215-901 |
| Cow position: | chr28:7740790-7741455 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 215-901 |
| Cow position: | chr28:13460279-13460981 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 215-903 |
| Cow position: | chr28:26425942-26425245 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 220-493 |
| Cow position: | chr28:29820048-29820320 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-512 |
| Cow position: | chr28:10581670-10581374 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 220-542 |
| Cow position: | chr28:2083908-2084229 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-584 |
| Cow position: | chr28:34594293-34594660 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 220-593 |
| Cow position: | chr28:782709-783082 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-894 |
| Cow position: | chr28:32792066-32791375 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 220-901 |
| Cow position: | chr28:5751391-5750700 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-901 |
| Cow position: | chr28:5937790-5938492 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-901 |
| Cow position: | chr28:33252626-33253311 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-902 |
| Cow position: | chr28:1167567-1166870 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-903 |
| Cow position: | chr28:1814553-1813853 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 220-903 |
| Cow position: | chr28:5113984-5113286 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-903 |
| Cow position: | chr28:12409914-12409224 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 221-363 |
| Cow position: | chr28:30805380-30805238 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 221-881 |
| Cow position: | chr28:17388798-17389468 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 20 |
| Conread position: | 221-901 |
| Cow position: | chr28:5566460-5567162 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 221-903 |
| Cow position: | chr28:1505180-1505877 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 221-903 |
| Cow position: | chr28:17666982-17666296 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 20 |
| Conread position: | 222-396 |
| Cow position: | chr28:14705355-14705181 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 136, 19 |
| Conread position: | 222-894 |
| Cow position: | chr28:7002306-7002996 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 19 |
| Conread position: | 222-903 |
| Cow position: | chr28:12150619-12151315 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 223-369 |
| Cow position: | chr28:7901678-7901824 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 223-631 |
| Cow position: | chr28:7822567-7822980 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 120 |
| Conread position: | 223-729 |
| Cow position: | chr28:1953439-1953959 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 120 |
| Conread position: | 223-889 |
| Cow position: | chr28:22233090-22232427 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 130 |
| Conread position: | 223-894 |
| Cow position: | chr28:6780024-6779339 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 31 |
| Conread position: | 223-903 |
| Cow position: | chr28:485253-484586 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 123 |
| Conread position: | 225-894 |
| Cow position: | chr28:1387085-1386398 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 28 |
| Conread position: | 235-903 |
| Cow position: | chr28:14750867-14751554 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 241-903 |
| Cow position: | chr28:6538934-6538254 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 243-903 |
| Cow position: | chr28:24667946-24668622 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 88 |
| Conread position: | 246-903 |
| Cow position: | chr28:2724590-2723914 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 100 |
| Conread position: | 258-901 |
| Cow position: | chr28:3191895-3191248 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 268-454 |
| Cow position: | chr28:24588444-24588633 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 268-889 |
| Cow position: | chr28:24589206-24589846 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 156 |
| Conread position: | 270-520 |
| Cow position: | chr28:8720935-8720680 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 276-735 |
| Cow position: | chr28:28473016-28473484 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 103, 58 |
| Conread position: | 279-856 |
| Cow position: | chr28:18100851-18100245 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 280-764 |
| Cow position: | chr28:14195320-14194825 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 282-471 |
| Cow position: | chr28:24704874-24705057 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 61 |
Show alignments to all cow chromosomes.