Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 13-608 |
| Cow position: | chr29:802861-802265 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 15 |
| Conread position: | 20-627 |
| Cow position: | chr29:15949467-15948874 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 7 |
| Conread position: | 28-269 |
| Cow position: | chr29:2951398-2951167 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 156, 59 |
| Conread position: | 28-742 |
| Cow position: | chr29:8062402-8061683 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 30-901 |
| Cow position: | chr29:14086032-14085156 (view UCSC Genome Browser custom track) |
| Alignm length: | 897 |
| Alignm identity: | 648 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 73-664 |
| Cow position: | chr29:105160-105757 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 21 |
| Conread position: | 93-338 |
| Cow position: | chr29:31488167-31488424 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 136-901 |
| Cow position: | chr29:16174689-16173913 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 168-358 |
| Cow position: | chr29:27040536-27040356 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 173-338 |
| Cow position: | chr29:34300529-34300373 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 179-889 |
| Cow position: | chr29:4634161-4633443 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 168 |
| Conread position: | 181-706 |
| Cow position: | chr29:16016540-16016004 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 110 |
| Conread position: | 205-901 |
| Cow position: | chr29:40502719-40502008 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 36 |
| Conread position: | 207-903 |
| Cow position: | chr29:2841109-2840402 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 115 |
| Conread position: | 207-903 |
| Cow position: | chr29:45459983-45460698 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 34 |
| Conread position: | 215-669 |
| Cow position: | chr29:48205-47740 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 215-903 |
| Cow position: | chr29:20251434-20252140 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 216-901 |
| Cow position: | chr29:25932270-25931568 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 220-493 |
| Cow position: | chr29:6266221-6265947 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 21 |
| Conread position: | 220-559 |
| Cow position: | chr29:19653388-19653738 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 220-593 |
| Cow position: | chr29:410245-409868 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 220-605 |
| Cow position: | chr29:23976120-23976503 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-633 |
| Cow position: | chr29:19622967-19622552 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-633 |
| Cow position: | chr29:32540090-32540500 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 220-894 |
| Cow position: | chr29:2100125-2100812 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-894 |
| Cow position: | chr29:16022810-16023497 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-901 |
| Cow position: | chr29:7430939-7430246 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 220-903 |
| Cow position: | chr29:2690180-2690887 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 220-903 |
| Cow position: | chr29:10647971-10647274 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 220-903 |
| Cow position: | chr29:14586202-14586896 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-903 |
| Cow position: | chr29:34799530-34798834 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 220-903 |
| Cow position: | chr29:38227260-38227953 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 21 |
| Conread position: | 220-903 |
| Cow position: | chr29:43322834-43323533 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 221-894 |
| Cow position: | chr29:15894577-15893886 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 122 |
| Conread position: | 221-901 |
| Cow position: | chr29:39079430-39078733 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 222-894 |
| Cow position: | chr29:21426749-21426063 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 358 |
| Conread position: | 222-901 |
| Cow position: | chr29:9643477-9642789 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 222-903 |
| Cow position: | chr29:10823688-10823008 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 124 |
| Conread position: | 223-369 |
| Cow position: | chr29:21543087-21542941 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 223-459 |
| Cow position: | chr29:42650547-42650785 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 120, 126 |
| Conread position: | 223-587 |
| Cow position: | chr29:42802407-42802776 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 126 |
| Conread position: | 223-901 |
| Cow position: | chr29:19885345-19886038 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 120 |
| Conread position: | 223-901 |
| Cow position: | chr29:26164540-26163857 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 223-903 |
| Cow position: | chr29:610337-609650 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 123 |
| Conread position: | 223-903 |
| Cow position: | chr29:669782-669083 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 123 |
| Conread position: | 224-901 |
| Cow position: | chr29:5957887-5958572 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 228-768 |
| Cow position: | chr29:9961577-9962120 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 234-597 |
| Cow position: | chr29:13582354-13582717 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 112 |
| Conread position: | 234-903 |
| Cow position: | chr29:15968575-15967886 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 120 |
| Conread position: | 234-903 |
| Cow position: | chr29:45587075-45586400 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 188 |
| Conread position: | 235-894 |
| Cow position: | chr29:31181701-31182368 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 235-903 |
| Cow position: | chr29:27980633-27979949 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 241-594 |
| Cow position: | chr29:7844624-7844982 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 241-878 |
| Cow position: | chr29:27250049-27249395 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 76 |
| Conread position: | 241-903 |
| Cow position: | chr29:34925772-34926453 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 246-903 |
| Cow position: | chr29:18856645-18855975 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 100 |
| Conread position: | 259-903 |
| Cow position: | chr29:35297180-35297808 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 85 |
Show alignments to all cow chromosomes.