Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 4-226 |
| Cow position: | chr4:21565284-21565501 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 89 |
| Conread position: | 20-903 |
| Cow position: | chr4:46664314-46665213 (view UCSC Genome Browser custom track) |
| Alignm length: | 916 |
| Alignm identity: | 705 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 74 |
| Conread position: | 28-444 |
| Cow position: | chr4:14549806-14550203 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 161, 38 |
| Conread position: | 30-572 |
| Cow position: | chr4:28831168-28831687 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 64 |
| Conread position: | 80-449 |
| Cow position: | chr4:11385617-11385969 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 81-896 |
| Cow position: | chr4:60264297-60263477 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 639 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 13 |
| Conread position: | 113-659 |
| Cow position: | chr4:50980122-50980651 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 155, 21 |
| Conread position: | 123-731 |
| Cow position: | chr4:51043358-51042736 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 137-542 |
| Cow position: | chr4:19093344-19093746 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 136, 22 |
| Conread position: | 147-903 |
| Cow position: | chr4:13869949-13870706 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 150-901 |
| Cow position: | chr4:34184591-34183845 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 7 |
| Conread position: | 151-640 |
| Cow position: | chr4:22472465-22472943 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 332 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 128, 50 |
| Conread position: | 151-893 |
| Cow position: | chr4:44925585-44924837 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 155-556 |
| Cow position: | chr4:1496451-1496055 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 167-659 |
| Cow position: | chr4:19251512-19251992 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 168-608 |
| Cow position: | chr4:14821600-14821165 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 205-647 |
| Cow position: | chr4:4176779-4177216 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 130, 28 |
| Conread position: | 206-894 |
| Cow position: | chr4:25599511-25598809 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 207-636 |
| Cow position: | chr4:44725073-44725507 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 207-807 |
| Cow position: | chr4:26886871-26886260 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 34 |
| Conread position: | 207-901 |
| Cow position: | chr4:31669261-31669967 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 34 |
| Conread position: | 207-903 |
| Cow position: | chr4:43881098-43881803 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 34 |
| Conread position: | 212-762 |
| Cow position: | chr4:100950-100385 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 138 |
| Conread position: | 215-470 |
| Cow position: | chr4:12587296-12587551 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 26 |
| Conread position: | 220-516 |
| Cow position: | chr4:33493827-33494123 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 220-589 |
| Cow position: | chr4:41120306-41120691 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 220-625 |
| Cow position: | chr4:45049296-45048887 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 220-894 |
| Cow position: | chr4:12241215-12240536 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 220-903 |
| Cow position: | chr4:6490362-6489666 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 220-903 |
| Cow position: | chr4:18516899-18517596 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 220-903 |
| Cow position: | chr4:43319644-43318945 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 221-415 |
| Cow position: | chr4:602989-603185 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 130, 122 |
| Conread position: | 221-608 |
| Cow position: | chr4:17926251-17925859 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 221-695 |
| Cow position: | chr4:13548025-13548512 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 118 |
| Conread position: | 221-892 |
| Cow position: | chr4:36896371-36897057 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 222-803 |
| Cow position: | chr4:16326779-16326179 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 222-901 |
| Cow position: | chr4:355913-356603 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 222-901 |
| Cow position: | chr4:48026400-48027094 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 200 |
| Conread position: | 222-903 |
| Cow position: | chr4:31565300-31564612 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 19 |
| Conread position: | 223-379 |
| Cow position: | chr4:66926000-66926151 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 223-784 |
| Cow position: | chr4:41954472-41955037 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 55 |
| Conread position: | 223-784 |
| Cow position: | chr4:41958127-41958702 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 55 |
| Conread position: | 223-894 |
| Cow position: | chr4:18190403-18191081 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-901 |
| Cow position: | chr4:3125793-3126484 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-903 |
| Cow position: | chr4:18424527-18423828 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 123 |
| Conread position: | 224-432 |
| Cow position: | chr4:27333433-27333642 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 130, 119 |
| Conread position: | 224-669 |
| Cow position: | chr4:16359888-16360322 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 17 |
| Conread position: | 235-894 |
| Cow position: | chr4:5880174-5880839 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 235-903 |
| Cow position: | chr4:4416091-4416768 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 115 |
| Conread position: | 235-903 |
| Cow position: | chr4:32212176-32212867 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 241-371 |
| Cow position: | chr4:158531-158661 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 241-436 |
| Cow position: | chr4:65223518-65223322 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 241-559 |
| Cow position: | chr4:6268616-6268289 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 103 |
| Conread position: | 241-867 |
| Cow position: | chr4:1930608-1929972 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 103 |
| Conread position: | 243-572 |
| Cow position: | chr4:9354758-9354425 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 103 |
| Conread position: | 245-664 |
| Cow position: | chr4:16056621-16057043 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 85 |
| Conread position: | 253-504 |
| Cow position: | chr4:21256382-21256639 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 117, 171 |
| Conread position: | 268-903 |
| Cow position: | chr4:33072777-33072123 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 275-898 |
| Cow position: | chr4:13493365-13494010 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 61 |
Show alignments to all cow chromosomes.