Cow genome map
| Conread name: | Tra1-TCH01G050069 |
| Conread position: | 3-889 |
| Cow position: | chr5:27001925-27002782 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 13-328 |
| Cow position: | chr5:26068422-26068109 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 13-330 |
| Cow position: | chr5:18272429-18272749 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 169, 15 |
| Conread position: | 20-603 |
| Cow position: | chr5:39247092-39246529 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 67 |
| Conread position: | 26-327 |
| Cow position: | chr5:46630120-46629832 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 189, 52 |
| Conread position: | 28-329 |
| Cow position: | chr5:18117265-18116981 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 28-339 |
| Cow position: | chr5:25000323-25000008 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 122, 52 |
| Conread position: | 28-658 |
| Cow position: | chr5:29435650-29435067 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 66 |
| Conread position: | 29-762 |
| Cow position: | chr5:23228569-23229331 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 30-376 |
| Cow position: | chr5:41962038-41961692 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 30-578 |
| Cow position: | chr5:46659954-46660486 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 37 |
| Conread position: | 31-903 |
| Cow position: | chr5:41528849-41527981 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 635 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 32-608 |
| Cow position: | chr5:14658742-14658165 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 53 |
| Conread position: | 73-296 |
| Cow position: | chr5:51164300-51164534 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 178 |
| Conread position: | 99-368 |
| Cow position: | chr5:61272579-61272305 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 90, 118 |
| Conread position: | 104-903 |
| Cow position: | chr5:14785396-14784575 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 111 |
| Conread position: | 108-901 |
| Cow position: | chr5:35525791-35526586 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 117-602 |
| Cow position: | chr5:32309621-32309120 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 123-736 |
| Cow position: | chr5:68470758-68470132 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 413 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 51, 119 |
| Conread position: | 150-903 |
| Cow position: | chr5:41957308-41956579 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 198 |
| Conread position: | 168-362 |
| Cow position: | chr5:45700319-45700505 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 5 |
| Conread position: | 185-508 |
| Cow position: | chr5:56857126-56856803 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 30 |
| Conread position: | 194-903 |
| Cow position: | chr5:10918890-10919619 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 201-888 |
| Cow position: | chr5:46738500-46737798 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 20 |
| Conread position: | 207-475 |
| Cow position: | chr5:6155137-6154869 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 21, 44 |
| Conread position: | 212-504 |
| Cow position: | chr5:26079141-26078848 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 136 |
| Conread position: | 212-901 |
| Cow position: | chr5:4019117-4018411 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 131 |
| Conread position: | 215-892 |
| Cow position: | chr5:37732438-37733128 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 26 |
| Conread position: | 215-903 |
| Cow position: | chr5:73489469-73488765 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 216-396 |
| Cow position: | chr5:32945965-32946147 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 128 |
| Conread position: | 220-627 |
| Cow position: | chr5:10843330-10842918 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 123 |
| Conread position: | 220-903 |
| Cow position: | chr5:2914545-2915239 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 220-903 |
| Cow position: | chr5:3504007-3503328 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 220-903 |
| Cow position: | chr5:7273925-7274621 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 30 |
| Conread position: | 220-903 |
| Cow position: | chr5:54792538-54791842 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 220-903 |
| Cow position: | chr5:55628083-55628784 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 220-903 |
| Cow position: | chr5:57482449-57481746 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 21 |
| Conread position: | 220-903 |
| Cow position: | chr5:64781921-64781223 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 221-479 |
| Cow position: | chr5:59482344-59482604 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 122 |
| Conread position: | 221-894 |
| Cow position: | chr5:48468189-48467499 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 221-899 |
| Cow position: | chr5:44459573-44460269 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 221-901 |
| Cow position: | chr5:30579420-30580119 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 20 |
| Conread position: | 222-478 |
| Cow position: | chr5:49119182-49118927 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 124 |
| Conread position: | 222-798 |
| Cow position: | chr5:415624-415032 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 124 |
| Conread position: | 222-901 |
| Cow position: | chr5:34696701-34697393 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 29 |
| Conread position: | 223-370 |
| Cow position: | chr5:45182011-45181864 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 135, 123 |
| Conread position: | 223-370 |
| Cow position: | chr5:47831021-47830874 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-605 |
| Cow position: | chr5:46644777-46645157 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 57 |
| Conread position: | 223-669 |
| Cow position: | chr5:46664095-46664536 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-761 |
| Cow position: | chr5:18666084-18666638 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 223-790 |
| Cow position: | chr5:31101526-31100950 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 10 |
| Conread position: | 223-894 |
| Cow position: | chr5:3964544-3965231 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 108 |
| Conread position: | 223-902 |
| Cow position: | chr5:4385345-4386034 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 32 |
| Conread position: | 223-902 |
| Cow position: | chr5:27909180-27908485 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 123 |
| Conread position: | 223-903 |
| Cow position: | chr5:10776172-10775478 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-903 |
| Cow position: | chr5:31706666-31707343 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 223-903 |
| Cow position: | chr5:59060710-59061406 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 235-354 |
| Cow position: | chr5:58196105-58196223 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 235-468 |
| Cow position: | chr5:24577018-24577251 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 235-605 |
| Cow position: | chr5:10482951-10483327 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 235-751 |
| Cow position: | chr5:14380252-14380776 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 114 |
| Conread position: | 235-891 |
| Cow position: | chr5:6588917-6588244 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 235-903 |
| Cow position: | chr5:23960212-23959524 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 235-903 |
| Cow position: | chr5:46776182-46776862 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 241-556 |
| Cow position: | chr5:54932108-54931789 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 241-631 |
| Cow position: | chr5:32772592-32772995 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 192 |
| Conread position: | 241-803 |
| Cow position: | chr5:4089181-4089758 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 241-891 |
| Cow position: | chr5:18122358-18121706 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 247-735 |
| Cow position: | chr5:5667937-5667447 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 255-894 |
| Cow position: | chr5:12643596-12642943 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 89 |
| Conread position: | 263-903 |
| Cow position: | chr5:3786064-3786712 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 269-903 |
| Cow position: | chr5:4069360-4070006 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 5 |
| Conread position: | 269-903 |
| Cow position: | chr5:35300237-35300890 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 275-888 |
| Cow position: | chr5:53625744-53625137 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 280-892 |
| Cow position: | chr5:18401549-18400910 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 107 |
| Conread position: | 281-894 |
| Cow position: | chr5:48808578-48807956 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 66 |
| Conread position: | 291-481 |
| Cow position: | chr5:59144531-59144723 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 348-862 |
| Cow position: | chr5:18115632-18115125 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 74 |
Show alignments to all cow chromosomes.